MD13G1110400.v1.1

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
8029901 .. 8033276
3376 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1110400.v1.1.491

Sequence Viewer

Length: 1569 bp
ATGATCAAGAATTTAATTGGTAAGCTTCCTAGGAAGCCGTCTAAGTCAGCCGAGAATCGTGAATCTGGGGGTTCATCTGCCGCTACATTGAATGCTTCCTCTATAGGTTCAAGAAGCGGTGATGTAGGGAATAGGCCAATTAATTCAAATAGCGTACCTCTTTCAGGCCTTGATTCTGATTCAAATTTAGGATATGGCCATGGAAGTAAGCTCCCTCAACTTGTCAACTCAAGTCTGAATTCTGTTACCACTTCTTATGAAGCGTTTCCAGCTTTTAGAGATGTACCAAACTCCGAGAAGCATCACTTGTTTGTGAAAAAGCTGAACTTATGTTGTGTGGTGTTTGACTTCACTGACCCAACGAAAAATCTGAGAGAAAAAGACATCAAGCGGCAGACGTTGCTAGAGCTTGTAGATTATGTTACTTCTGCAAATGGAAAGTTCAATGAAATCATAGTGCAAGAAGTTGTAAAGGTGGTGACTGTGAATTTGTTCAGGTCATTCTCTCCACAGCCCCGTGAGAATAAGGTTTTAGAAGGATTTGATGTGGAGGAGGAGGAGCCTTTGATGGACCCTGCATGGTCACACTTACAGATTGTGTACGAACTTTTTCTGAGGTTTGTTGCATCGCCCGAGACAGATGCAAAGGTCGCTAAGAAGTACATTGATCAGTCTTTTGTTCTCAAATTATTGGATCTCTTTGATTCTGAGGATCCTAGGGAAAGGGAGTACTTAAAAACAATTCTGCATCGTGTCTATGGAAAGTTTATGGTGCATCGCCCATTCATTAGGAAGGCGATCAACAATATATTTTTCCGATTTATTTTTGAAACAGAAAAGCACAATGGGATTGCTGAGCTTTTAGAGGTTTTGGGCAGTATAATCAATGGATTTGCTCTTCCGCTTAAAGAAGAACACAAACTTTTCCTAGTTCAGGCTCTGATCCCCCTTCACAAACCAAGATGCTTACAAATGTACCATCAGCAGTTGTCCTACTGCATTTCACAGTTTGTCGAGAAAGATTGCAAGCTTGCAGATACTGTTATAAGAGGGCTGTTAAAGTACTGGCCAATCACAAATAGTTCAAAGGAAGTCATGTTCCTAAGTGAGCTCGAGGAAACTTTAGAAGCAACTCAGCCAGCAGAATTTCAAACATGTATGGTACCACTCTTCCGCCAAATATCTCGTTGCTTGAGCAGTTCACAATTTCAGGTGGCAGAGAGGGCCTTGTACTTGTGGAACAATGACCACATCGAGGACTTAATCAGACAAAACCGTAAAGTCATATTGCCCATTATCTTTCCTGCTTTGGAGAAGAATGGCCACAACCACTGGAACCAAGTGGCGCGGAGGTTGACGTTAAACATCCGTAAAATCTACTCTGACATTGATCCTGAGCTATTTGAGGAGTGTTTGCTCAAATTTCAAGAAGATGAAGCAAAAGAGGAGGAGATTAAAGCAAAACATGTAGCCACCTGGAAGCACTTAGAAGAGATTGCTGCTTCTAACGCTGTTAGCAGTGAAGCAGTTGTTGGCCGCTTGGACCCAACCCAGACATCTCCAAGCTAA

Protein Analysis

523

Amino Acids

59.66

Weight (kDa)

6.35

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B56 PF01603 90 - 500 4.5e-184 Protein phosphatase 2A regulatory B subunit (B56 family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1046
Acc65I GGTACC 1 cut(s) 1162
AccB1I GGYRCC 1 cut(s) 1162
AccII CGCG 1 cut(s) 1348
AciI CCGC 7 cut(s) 81, 117, 391, 902, 1174, 1348, 1537
AclWI GGATC 5 cut(s) 702, 707, 720, 937, 1385
AcoI YGGCCR 4 cut(s) 196, 1067, 1321, 1534
AcsI RAATTY 6 cut(s) 10, 184, 238, 487, 1145, 1421
AfaI GTAC 9 cut(s) 156, 285, 602, 662, 731, 977, 1064, 1164, 1232
AfiI CCNNNNNNNGG 3 cut(s) 164, 934, 1255
AflIII ACRYGT 2 cut(s) 1154, 1465
AgsI TTSAA 9 cut(s) 91, 111, 147, 183, 445, 830, 1086, 1151, 1427
AjnI CCWGG 1 cut(s) 1475
AjuI GAANNNNNNNTTGG 2 cut(s) 1515, 1547
AloI GAACNNNNNNTCC 2 cut(s) 1082, 1114
Alw21I GWGCWC 1 cut(s) 1113
Alw26I GTCTC 1 cut(s) 629
AlwI GGATC 5 cut(s) 702, 707, 720, 937, 1385
AlwNI CAGNNNCTG 2 cut(s) 940, 1040
Ama87I CYCGRG 2 cut(s) 632, 1112
AoxI GGCC 7 cut(s) 134, 166, 196, 1067, 1224, 1321, 1534
ApeKI GCWGC 1 cut(s) 1499
ApoI RAATTY 6 cut(s) 10, 184, 238, 487, 1145, 1421
ArsI GACNNNNNNTTYG 2 cut(s) 472, 504
AseI ATTAAT 1 cut(s) 141
Asp700I GAANNNNTTC 3 cut(s) 264, 491, 609
Asp718I GGTACC 1 cut(s) 1162
AspA2I CCTAGG 2 cut(s) 29, 716
AspLEI GCGC 1 cut(s) 1348
AspS9I GGNCC 3 cut(s) 571, 1224, 1543
AsuHPI GGTGA 2 cut(s) 131, 490
AvaI CYCGRG 2 cut(s) 632, 1112
AvaII GGWCC 2 cut(s) 571, 1543
AvrII CCTAGG 2 cut(s) 29, 716
BaeI ACNNNNGTAYC 2 cut(s) 959, 992
BalI TGGCCA 3 cut(s) 198, 1069, 1323
BamHI GGATCC 1 cut(s) 712
BanI GGYRCC 1 cut(s) 1162
BanII GRGCYC 1 cut(s) 1113
Bbv12I GWGCWC 1 cut(s) 1113
BbvI GCAGC 1 cut(s) 1486
BccI CCATC 2 cut(s) 562, 987
BceAI ACGGC 1 cut(s) 22
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BciT130I CCWGG 1 cut(s) 1477
BclI TGATCA 2 cut(s) 3, 667
BcoDI GTCTC 1 cut(s) 629
BfaI CTAG 4 cut(s) 30, 404, 717, 929
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 4 cut(s) 81, 392, 1500, 1537
BlnI CCTAGG 2 cut(s) 29, 716
BlpI GCTNAGC 1 cut(s) 855
BlsI GCNGC 4 cut(s) 82, 393, 1501, 1538
BmcAI AGTACT 2 cut(s) 731, 1064
Bme1390I CCNGG 1 cut(s) 1477
Bme18I GGWCC 2 cut(s) 571, 1543
BmeT110I CYCGRG 2 cut(s) 632, 1112
BmgT120I GGNCC 3 cut(s) 571, 1224, 1543
BmiI GGNNCC 6 cut(s) 561, 573, 714, 1164, 1337, 1545
BmrFI CCNGG 1 cut(s) 1477
BmsI GCATC 6 cut(s) 310, 631, 635, 757, 784, 953
Bpu10I CCTNAGC 1 cut(s) 1395
Bpu1102I GCTNAGC 1 cut(s) 855
BpuEI CTTGAG 2 cut(s) 214, 1213
BsaJI CCNNGG 3 cut(s) 29, 199, 716
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 934, 1255
Bse1I ACTGG 2 cut(s) 1070, 1337
BseBI CCWGG 1 cut(s) 1477
BseDI CCNNGG 3 cut(s) 29, 199, 716
BseGI GGATG 1 cut(s) 1365
BseLI CCNNNNNNNGG 3 cut(s) 164, 934, 1255
BseMII CTCAG 6 cut(s) 362, 605, 699, 846, 1148, 1386
BseNI ACTGG 2 cut(s) 1070, 1337
BseRI GAGGAG 6 cut(s) 566, 569, 572, 1421, 1460, 1463
BseXI GCAGC 1 cut(s) 1486
Bsh1236I CGCG 1 cut(s) 1348
BshFI GGCC 7 cut(s) 136, 168, 198, 1069, 1226, 1323, 1536
BshNI GGYRCC 1 cut(s) 1162
BsiHKAI GWGCWC 1 cut(s) 1113
BsiHKCI CYCGRG 2 cut(s) 632, 1112
BslI CCNNNNNNNGG 3 cut(s) 164, 934, 1255
BsmAI GTCTC 1 cut(s) 629
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 7 cut(s) 136, 168, 198, 1069, 1226, 1323, 1536
BsoBI CYCGRG 2 cut(s) 632, 1112
Bsp1286I GDGCHC 1 cut(s) 1113
Bsp143I GATC 7 cut(s) 3, 667, 694, 712, 798, 942, 1390
Bsp1720I GCTNAGC 1 cut(s) 855
Bsp19I CCATGG 1 cut(s) 199
BspACI CCGC 7 cut(s) 81, 117, 391, 902, 1174, 1348, 1537
BspANI GGCC 7 cut(s) 136, 168, 198, 1069, 1226, 1323, 1536
BspCNI CTCAG 6 cut(s) 363, 606, 700, 847, 1147, 1387
BspFNI CGCG 1 cut(s) 1348
BspLI GGNNCC 6 cut(s) 561, 573, 714, 1164, 1337, 1545
BspPI GGATC 5 cut(s) 702, 707, 720, 937, 1385
BspQI GCTCTTC 1 cut(s) 903
BspT107I GGYRCC 1 cut(s) 1162
BsrI ACTGG 2 cut(s) 1070, 1337
BssECI CCNNGG 3 cut(s) 29, 199, 716
BssMI GATC 7 cut(s) 3, 667, 694, 712, 798, 942, 1390
BssT1I CCWWGG 3 cut(s) 29, 199, 716
Bst2UI CCWGG 1 cut(s) 1477
Bst4CI ACNGT 4 cut(s) 484, 1008, 1042, 1277
Bst6I CTCTTC 3 cut(s) 903, 1175, 1485
BstAPI GCANNNNNTGC 1 cut(s) 400
BstC8I GCNNGC 3 cut(s) 1028, 1032, 1140
BstDSI CCRYGG 1 cut(s) 199
BstENI CCTNNNNNAGG 2 cut(s) 162, 932
BstF5I GGATG 1 cut(s) 1365
BstFNI CGCG 1 cut(s) 1348
BstHHI GCGC 1 cut(s) 1348
BstKTI GATC 7 cut(s) 6, 670, 697, 715, 801, 945, 1393
BstMAI GTCTC 1 cut(s) 629
BstMBI GATC 7 cut(s) 3, 667, 694, 712, 798, 942, 1390
BstMWI GCNNNNNNNGC 5 cut(s) 269, 400, 650, 1223, 1508
BstNI CCWGG 1 cut(s) 1477
BstNSI RCATGY 2 cut(s) 1158, 1469
BstSCI CCNGG 1 cut(s) 1475
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 1 cut(s) 1348
BstV1I GCAGC 1 cut(s) 1486
BstX2I RGATCY 2 cut(s) 694, 712
BstYI RGATCY 2 cut(s) 694, 712
BsuRI GGCC 7 cut(s) 136, 168, 198, 1069, 1226, 1323, 1536
BtgI CCRYGG 1 cut(s) 199
BtgZI GCGATG 2 cut(s) 612, 761
BtsCI GGATG 1 cut(s) 1365
BtsI GCAGTG 1 cut(s) 1525
BtsIMutI CAGTG 3 cut(s) 351, 1330, 1525
Cac8I GCNNGC 3 cut(s) 1028, 1032, 1140
CaiI CAGNNNCTG 2 cut(s) 940, 1040
CfoI GCGC 1 cut(s) 1348
Cfr13I GGNCC 3 cut(s) 571, 1224, 1543
Csp6I GTAC 9 cut(s) 155, 284, 601, 661, 730, 976, 1063, 1163, 1231
CviAII CATG 5 cut(s) 200, 579, 1096, 1155, 1466
CviQI GTAC 9 cut(s) 155, 284, 601, 661, 730, 976, 1063, 1163, 1231
DpnI GATC 7 cut(s) 5, 669, 696, 714, 800, 944, 1392
DpnII GATC 7 cut(s) 3, 667, 694, 712, 798, 942, 1390
EaeI YGGCCR 4 cut(s) 196, 1067, 1321, 1534
Eam1104I CTCTTC 3 cut(s) 903, 1175, 1485
EarI CTCTTC 3 cut(s) 903, 1175, 1485
EciI GGCGGA 1 cut(s) 1163
Ecl136II GAGCTC 1 cut(s) 1111
Eco130I CCWWGG 3 cut(s) 29, 199, 716
Eco147I AGGCCT 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 1113
Eco47I GGWCC 2 cut(s) 571, 1543
Eco53kI GAGCTC 1 cut(s) 1111
Eco88I CYCGRG 2 cut(s) 632, 1112
EcoICRI GAGCTC 1 cut(s) 1111
EcoNI CCTNNNNNAGG 2 cut(s) 162, 932
EcoO109I RGGNCCY 1 cut(s) 1224
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 1475
EcoT14I CCWWGG 3 cut(s) 29, 199, 716
EcoT38I GRGCYC 1 cut(s) 1113
ErhI CCWWGG 3 cut(s) 29, 199, 716
FaeI CATG 5 cut(s) 203, 582, 1099, 1158, 1469
FalI AAGNNNNNCTT 4 cut(s) 290, 322, 311, 343
FatI CATG 5 cut(s) 199, 578, 1095, 1154, 1465
FbaI TGATCA 2 cut(s) 3, 667
Fnu4HI GCNGC 4 cut(s) 81, 392, 1500, 1537
FokI GGATG 1 cut(s) 1352
FriOI GRGCYC 1 cut(s) 1113
Fsp4HI GCNGC 4 cut(s) 81, 392, 1500, 1537
FspBI CTAG 4 cut(s) 30, 404, 717, 929
GlaI GCGC 1 cut(s) 1347
GluI GCNGC 4 cut(s) 81, 392, 1500, 1537
HaeIII GGCC 7 cut(s) 136, 168, 198, 1069, 1226, 1323, 1536
HhaI GCGC 1 cut(s) 1348
Hin1II CATG 5 cut(s) 203, 582, 1099, 1158, 1469
Hin6I GCGC 1 cut(s) 1346
HinP1I GCGC 1 cut(s) 1346
HincII GTYRAC 2 cut(s) 226, 1356
HindII GTYRAC 2 cut(s) 226, 1356
HindIII AAGCTT 2 cut(s) 23, 1028
HinfI GANTC 5 cut(s) 55, 62, 173, 179, 704
HphI GGTGA 2 cut(s) 131, 490
Hpy166II GTNNAC 4 cut(s) 226, 601, 1202, 1356
Hpy188III TCNNGA 6 cut(s) 7, 59, 111, 1015, 1394, 1427
Hpy8I GTNNAC 4 cut(s) 226, 601, 1202, 1356
HpyAV CCTTC 3 cut(s) 530, 787, 959
HpyCH4III ACNGT 4 cut(s) 484, 1008, 1042, 1277
HpyCH4IV ACGT 2 cut(s) 398, 1358
HpyF10VI GCNNNNNNNGC 5 cut(s) 269, 400, 650, 1223, 1508
HpySE526I ACGT 2 cut(s) 398, 1358
Hsp92II CATG 5 cut(s) 203, 582, 1099, 1158, 1469
HspAI GCGC 1 cut(s) 1346
KpnI GGTACC 1 cut(s) 1166
Ksp22I TGATCA 2 cut(s) 3, 667
Kzo9I GATC 7 cut(s) 3, 667, 694, 712, 798, 942, 1390
LguI GCTCTTC 1 cut(s) 903
LmnI GCTCC 2 cut(s) 216, 559
Lsp1109I GCAGC 1 cut(s) 1486
LweI GCATC 6 cut(s) 310, 631, 635, 757, 784, 953
MaeI CTAG 4 cut(s) 30, 404, 717, 929
MaeII ACGT 2 cut(s) 398, 1358
MaeIII GTNAC 4 cut(s) 244, 421, 478, 582
MalI GATC 7 cut(s) 5, 669, 696, 714, 800, 944, 1392
MboI GATC 7 cut(s) 3, 667, 694, 712, 798, 942, 1390
MboII GAAGA 6 cut(s) 890, 923, 1162, 1327, 1442, 1502
MflI RGATCY 2 cut(s) 694, 712
MhlI GDGCHC 1 cut(s) 1113
MlsI TGGCCA 3 cut(s) 198, 1069, 1323
MluNI TGGCCA 3 cut(s) 198, 1069, 1323
Mox20I TGGCCA 3 cut(s) 198, 1069, 1323
MroXI GAANNNNTTC 3 cut(s) 264, 491, 609
MscI TGGCCA 3 cut(s) 198, 1069, 1323
MseI TTAA 8 cut(s) 14, 141, 734, 906, 1058, 1262, 1361, 1455
Msp20I TGGCCA 3 cut(s) 198, 1069, 1323
MspR9I CCNGG 1 cut(s) 1477
Mva1269I GAATGC 1 cut(s) 97
MvaI CCWGG 1 cut(s) 1477
MvnI CGCG 1 cut(s) 1348
MwoI GCNNNNNNNGC 5 cut(s) 269, 400, 650, 1223, 1508
NcoI CCATGG 1 cut(s) 199
NdeII GATC 7 cut(s) 3, 667, 694, 712, 798, 942, 1390
NlaIII CATG 5 cut(s) 203, 582, 1099, 1158, 1469
NlaIV GGNNCC 6 cut(s) 561, 573, 714, 1164, 1337, 1545
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 2 cut(s) 478, 582
NspI RCATGY 2 cut(s) 1158, 1469
PaeR7I CTCGAG 1 cut(s) 1112
PceI AGGCCT 1 cut(s) 168
PciI ACATGT 2 cut(s) 1154, 1465
PciSI GCTCTTC 1 cut(s) 903
PctI GAATGC 1 cut(s) 97
PdmI GAANNNNTTC 3 cut(s) 264, 491, 609
PfeI GAWTC 5 cut(s) 55, 62, 173, 179, 704
PkrI GCNGC 4 cut(s) 82, 393, 1501, 1538
PscI ACATGT 2 cut(s) 1154, 1465
PshBI ATTAAT 1 cut(s) 141
PsiI TTATAA 1 cut(s) 1046
Psp124BI GAGCTC 1 cut(s) 1113
Psp6I CCWGG 1 cut(s) 1475
PspGI CCWGG 1 cut(s) 1475
PspN4I GGNNCC 6 cut(s) 561, 573, 714, 1164, 1337, 1545
PspPI GGNCC 3 cut(s) 571, 1224, 1543
PspXI VCTCGAGB 1 cut(s) 1112
PstNI CAGNNNCTG 2 cut(s) 940, 1040
PsuI RGATCY 2 cut(s) 694, 712
RsaI GTAC 9 cut(s) 156, 285, 602, 662, 731, 977, 1064, 1164, 1232
RsaNI GTAC 9 cut(s) 155, 284, 601, 661, 730, 976, 1063, 1163, 1231
SacI GAGCTC 1 cut(s) 1113
SapI GCTCTTC 1 cut(s) 903
SaqAI TTAA 8 cut(s) 14, 141, 734, 906, 1058, 1262, 1361, 1455
SatI GCNGC 4 cut(s) 81, 392, 1500, 1537
Sau3AI GATC 7 cut(s) 3, 667, 694, 712, 798, 942, 1390
Sau96I GGNCC 3 cut(s) 571, 1224, 1543
ScaI AGTACT 2 cut(s) 731, 1064
ScrFI CCNGG 1 cut(s) 1477
SduI GDGCHC 1 cut(s) 1113
SfaNI GCATC 6 cut(s) 310, 631, 635, 757, 784, 953
SfcI CTRYAG 1 cut(s) 102
Sfr274I CTCGAG 1 cut(s) 1112
SinI GGWCC 2 cut(s) 571, 1543
SlaI CTCGAG 1 cut(s) 1112
SmlI CTYRAG 3 cut(s) 229, 1112, 1192
SmoI CTYRAG 3 cut(s) 229, 1112, 1192
SseBI AGGCCT 1 cut(s) 168
SsiI CCGC 7 cut(s) 81, 117, 391, 902, 1174, 1348, 1537
SspMI CTAG 4 cut(s) 30, 404, 717, 929
SstI GAGCTC 1 cut(s) 1113
StuI AGGCCT 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 1475
StyI CCWWGG 3 cut(s) 29, 199, 716
TaaI ACNGT 4 cut(s) 484, 1008, 1042, 1277
TaiI ACGT 2 cut(s) 401, 1361
TaqI TCGA 3 cut(s) 1014, 1113, 1254
TatI WGTACW 4 cut(s) 660, 729, 1062, 1230
TauI GCSGC 3 cut(s) 83, 394, 1539
TfiI GAWTC 5 cut(s) 55, 62, 173, 179, 704
Tru1I TTAA 8 cut(s) 14, 141, 734, 906, 1058, 1262, 1361, 1455
Tru9I TTAA 8 cut(s) 14, 141, 734, 906, 1058, 1262, 1361, 1455
TscAI CASTG 3 cut(s) 358, 1337, 1525
TseFI GTSAC 2 cut(s) 478, 582
TseI GCWGC 1 cut(s) 1499
Tsp45I GTSAC 2 cut(s) 478, 582
TspDTI ATGAA 5 cut(s) 63, 273, 462, 775, 1449
TspGWI ACGGA 1 cut(s) 1358
TspRI CASTG 3 cut(s) 358, 1337, 1525
VpaK11BI GGWCC 2 cut(s) 571, 1543
VspI ATTAAT 1 cut(s) 141
XagI CCTNNNNNAGG 2 cut(s) 162, 932
XapI RAATTY 6 cut(s) 10, 184, 238, 487, 1145, 1421
XceI RCATGY 2 cut(s) 1158, 1469
XhoI CTCGAG 1 cut(s) 1112
XmaJI CCTAGG 2 cut(s) 29, 716
XmnI GAANNNNTTC 3 cut(s) 264, 491, 609
XspI CTAG 4 cut(s) 30, 404, 717, 929
ZrmI AGTACT 2 cut(s) 731, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.