FvH4_4g24551

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
26659263 .. 26663506
4244 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24551.t1

Sequence Viewer

Length: 1545 bp
ATGATCAAGCAGATACTTGGTAGGCTTCCAAGGAAGCCCTCAAAGTCAGCTGACAATCGTGAATACGGGGGTGCGTCTGCATCTTCATTGAATGCTTCAATCAGTTCAAGAAAGAGTGACTTAGCTAGTGATAGGCCAATAAACGCGAACAGCGTACCTGTTTTGGACCTTGATGGTGCTTCGCGTTTGGCCAATCGTGGTGGAAGTAAGCTCCCCCAAGTTGTAAATTCGAAGCTGAATGGTAATTCTGTTGCTGCTTCTTATGAAGCGTTGCCAGCATTTAGGGATGTGCCAGGCTCTGAGAAGCAGATCTTGTTTATCAAGAAGCTGAACTTGTGTAGCGTTGTGTTTGACTTCACTGACCCAGCAAAGCATCTGAAGGAAAAAGACATCAAACGTCAGACATTGCTTGAGCTGGTGGATCATGTTAGTTCTGCCAGTGGAAAATTTAATGAAACTATCATTCAAGAGGCTATAAAGATGGTGAGTGTGAATTTGTTCAGGTCACTCTCTCCACAACCCCGTGAAAACAAGGTTTTGGAATCTTTTGATATGGAGGATGATGAGCCTTTGATGGACCCTGCATGGCCACACTTACAAATTGTGTACGAATTTTTTCTCAGGTTTGTTGCATCTCCTGAGACAGATGCAAAATTGGCTAAGAGGTACATTGATCAGTCCTTTGTTCTCAAGTTGTTGGATCTCTTTGATTCCGAGGATCCTAGGGAGAGGGAGTATCTGAAAACAATTCTGCATCGTATCTATGGAAAGTTTATGGTGCATCGCCCATTCATAAGGAAGGGAATAAACAACATATTTTTCCGTTTCATTTTTGAAACAGAAAAGCATAATGGGATTGCTGAGATGTTAGAGGTTTTGGGCAGTATAATCAATGGATTTGCTCTTCCACTTAAAGAAGAGCACAAACTCTTTCTAACTCGGGCTCTGATCCCCCTTCACAAACCTAAATGCTTATCAATGTACCATCAGCAGTTGTCATACTGCATTACTCAGTTTGTAGAGAAAGATTGCAAACTGACGGATACTGTTATAAGAGGCTTGTTAAAGTATTGGCCGATCACTAGTAGTTCAAAGGAAGTCATGTTCCTAAGCGAGCTGGAGGAAATCTTAGAAGCAACCCAGCCTGCAGAATTTCAAAGGTGTATGGTTCCTCTCTTCCGCCAAATAGCTCGTTGCTTGAGCAGTTCACACTTTCAGGTGGCAGAGAGGGCTTTGTTCTTATGGAACAATGAACATATTGAGAACTTAATCAAACAAAACCGTAATGTCATACTGCCCATTATCTTTCCTGCTTTGGAGAAGAATGGGCGAAGCCACTGGAATCAAGCAGTCCACAGCTTGTCGCTGAACATCCGGAAAATCTTCTCTGATGCTGATCCTGAGCTAGTTGAGGAGTGTTTGCTCAAATTTCAGGAAGATGAAGCGAAAATGGAAGAGATTAAAAGAAAACAAGAAACCACCTGGAAGCGCTTAGAAGAGATTGCTGCTTCCAAAGCTGTTAGTGGGAAGCAGTGCCCTGCCTGA

Protein Analysis

515

Amino Acids

58.82

Weight (kDa)

8.44

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B56 PF01603 91 - 502 6.1e-189 Protein phosphatase 2A regulatory B subunit (B56 family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1052
AccII CGCG 2 cut(s) 146, 184
AccIII TCCGGA 1 cut(s) 1374
AciI CCGC 1 cut(s) 1180
AclWI GGATC 6 cut(s) 429, 708, 713, 726, 943, 1391
AcoI YGGCCR 3 cut(s) 189, 587, 1073
AcsI RAATTY 6 cut(s) 226, 446, 493, 611, 1151, 1427
AcuI CTGAAG 1 cut(s) 398
AfaI GTAC 4 cut(s) 156, 608, 668, 983
AfeI AGCGCT 1 cut(s) 1490
AgsI TTSAA 7 cut(s) 91, 99, 108, 467, 836, 1092, 1157
AhlI ACTAGT 1 cut(s) 1082
AjnI CCWGG 2 cut(s) 292, 1481
AloI GAACNNNNNNTCC 2 cut(s) 1088, 1120
Alw21I GWGCWC 1 cut(s) 924
Alw26I GTCTC 1 cut(s) 635
AlwI GGATC 6 cut(s) 429, 708, 713, 726, 943, 1391
AlwNI CAGNNNCTG 1 cut(s) 299
Ama87I CYCGRG 1 cut(s) 939
Aor13HI TCCGGA 1 cut(s) 1374
Aor51HI AGCGCT 1 cut(s) 1490
AoxI GGCC 4 cut(s) 134, 189, 587, 1073
ApeKI GCWGC 2 cut(s) 254, 1505
ApoI RAATTY 6 cut(s) 226, 446, 493, 611, 1151, 1427
Asp700I GAANNNNTTC 3 cut(s) 497, 615, 1382
AspA2I CCTAGG 1 cut(s) 722
AspLEI GCGC 1 cut(s) 1491
AspS9I GGNCC 2 cut(s) 166, 577
AsuHPI GGTGA 1 cut(s) 496
AsuII TTCGAA 1 cut(s) 230
AvaI CYCGRG 1 cut(s) 939
AvaII GGWCC 2 cut(s) 166, 577
AvrII CCTAGG 1 cut(s) 722
BaeGI GKGCMC 1 cut(s) 1538
BalI TGGCCA 2 cut(s) 191, 589
BamHI GGATCC 1 cut(s) 718
BanII GRGCYC 1 cut(s) 946
Bbv12I GWGCWC 1 cut(s) 924
BbvI GCAGC 2 cut(s) 241, 1492
BccI CCATC 4 cut(s) 167, 475, 568, 993
BciT130I CCWGG 2 cut(s) 294, 1483
BciVI GTATCC 1 cut(s) 1036
BclI TGATCA 2 cut(s) 3, 673
BcoDI GTCTC 1 cut(s) 635
BcuI ACTAGT 1 cut(s) 1082
BfaI CTAG 4 cut(s) 126, 723, 1083, 1406
BfmI CTRYAG 1 cut(s) 1146
BfoI RGCGCY 1 cut(s) 1492
BfuI GTATCC 1 cut(s) 1036
BglII AGATCT 1 cut(s) 309
BisI GCNGC 2 cut(s) 255, 1506
BlnI CCTAGG 1 cut(s) 722
BlsI GCNGC 2 cut(s) 256, 1507
Bme1390I CCNGG 2 cut(s) 294, 1483
Bme18I GGWCC 2 cut(s) 166, 577
BmeT110I CYCGRG 1 cut(s) 939
BmgT120I GGNCC 2 cut(s) 166, 577
BmiI GGNNCC 3 cut(s) 579, 720, 1170
BmrFI CCNGG 2 cut(s) 294, 1483
BmsI GCATC 7 cut(s) 89, 382, 637, 641, 763, 790, 1381
BpmI CTGGAG 1 cut(s) 1139
Bpu10I CCTNAGC 2 cut(s) 1109, 1401
Bpu14I TTCGAA 1 cut(s) 230
BpuEI CTTGAG 3 cut(s) 431, 674, 1219
BsaBI GATNNNNATC 1 cut(s) 1395
BsaJI CCNNGG 3 cut(s) 29, 714, 722
BsaWI WCCGGW 1 cut(s) 1374
BsaXI ACNNNNNCTCC 2 cut(s) 719, 749
Bse1I ACTGG 2 cut(s) 438, 1343
Bse3DI GCAATG 1 cut(s) 404
Bse8I GATNNNNATC 1 cut(s) 1395
BseAI TCCGGA 1 cut(s) 1374
BseBI CCWGG 2 cut(s) 294, 1483
BseDI CCNNGG 3 cut(s) 29, 714, 722
BseGI GGATG 3 cut(s) 292, 565, 1371
BseJI GATNNNNATC 1 cut(s) 1395
BseMI GCAATG 1 cut(s) 404
BseMII CTCAG 6 cut(s) 291, 630, 634, 852, 1025, 1392
BseNI ACTGG 2 cut(s) 438, 1343
BseRI GAGGAG 1 cut(s) 1427
BseSI GKGCMC 1 cut(s) 1538
BseXI GCAGC 2 cut(s) 241, 1492
BseYI CCCAGC 2 cut(s) 364, 1140
Bsh1236I CGCG 2 cut(s) 146, 184
BshFI GGCC 4 cut(s) 136, 191, 589, 1075
BsiHKAI GWGCWC 1 cut(s) 924
BsiHKCI CYCGRG 1 cut(s) 939
BsiSI CCGG 1 cut(s) 1375
BsmAI GTCTC 1 cut(s) 635
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 4 cut(s) 136, 191, 589, 1075
BsoBI CYCGRG 1 cut(s) 939
Bsp119I TTCGAA 1 cut(s) 230
Bsp1286I GDGCHC 3 cut(s) 924, 946, 1538
Bsp13I TCCGGA 1 cut(s) 1374
Bsp143I GATC 9 cut(s) 3, 309, 421, 673, 700, 718, 948, 1077, 1396
BspACI CCGC 1 cut(s) 1180
BspANI GGCC 4 cut(s) 136, 191, 589, 1075
BspCNI CTCAG 6 cut(s) 292, 631, 633, 853, 1024, 1393
BspEI TCCGGA 1 cut(s) 1374
BspFNI CGCG 2 cut(s) 146, 184
BspLI GGNNCC 3 cut(s) 579, 720, 1170
BspMAI CTGCAG 1 cut(s) 1150
BspPI GGATC 6 cut(s) 429, 708, 713, 726, 943, 1391
BspQI GCTCTTC 2 cut(s) 909, 912
BspT104I TTCGAA 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 404
BsrI ACTGG 2 cut(s) 438, 1343
BssECI CCNNGG 3 cut(s) 29, 714, 722
BssMI GATC 9 cut(s) 3, 309, 421, 673, 700, 718, 948, 1077, 1396
BssT1I CCWWGG 2 cut(s) 29, 722
Bst2UI CCWGG 2 cut(s) 294, 1483
Bst4CI ACNGT 2 cut(s) 1048, 1283
Bst6I CTCTTC 5 cut(s) 909, 912, 1181, 1449, 1491
BstBI TTCGAA 1 cut(s) 230
BstC8I GCNNGC 3 cut(s) 276, 1115, 1146
BstF5I GGATG 3 cut(s) 292, 565, 1371
BstFNI CGCG 2 cut(s) 146, 184
BstH2I RGCGCY 1 cut(s) 1492
BstHHI GCGC 1 cut(s) 1491
BstKTI GATC 9 cut(s) 6, 312, 424, 676, 703, 721, 951, 1080, 1399
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 9 cut(s) 3, 309, 421, 673, 700, 718, 948, 1077, 1396
BstMWI GCNNNNNNNGC 4 cut(s) 275, 656, 1229, 1514
BstNI CCWGG 2 cut(s) 294, 1483
BstSCI CCNGG 2 cut(s) 292, 1481
BstSFI CTRYAG 1 cut(s) 1146
BstSLI GKGCMC 1 cut(s) 1538
BstUI CGCG 2 cut(s) 146, 184
BstV1I GCAGC 2 cut(s) 241, 1492
BstX2I RGATCY 3 cut(s) 309, 700, 718
BstYI RGATCY 3 cut(s) 309, 700, 718
BsuI GTATCC 1 cut(s) 1036
BsuRI GGCC 4 cut(s) 136, 191, 589, 1075
BtgZI GCGATG 1 cut(s) 767
BtsCI GGATG 3 cut(s) 292, 565, 1371
BtsI GCAGTG 1 cut(s) 1538
BtsIMutI CAGTG 4 cut(s) 357, 445, 1336, 1538
Cac8I GCNNGC 3 cut(s) 276, 1115, 1146
CaiI CAGNNNCTG 1 cut(s) 299
CfoI GCGC 1 cut(s) 1491
Cfr13I GGNCC 2 cut(s) 166, 577
CseI GACGC 1 cut(s) 63
Csp6I GTAC 4 cut(s) 155, 607, 667, 982
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 3 cut(s) 425, 585, 1102
CviQI GTAC 4 cut(s) 155, 607, 667, 982
DpnI GATC 9 cut(s) 5, 311, 423, 675, 702, 720, 950, 1079, 1398
DpnII GATC 9 cut(s) 3, 309, 421, 673, 700, 718, 948, 1077, 1396
EaeI YGGCCR 3 cut(s) 189, 587, 1073
Eam1104I CTCTTC 5 cut(s) 909, 912, 1181, 1449, 1491
EarI CTCTTC 5 cut(s) 909, 912, 1181, 1449, 1491
EciI GGCGGA 1 cut(s) 1169
Eco130I CCWWGG 2 cut(s) 29, 722
Eco24I GRGCYC 1 cut(s) 946
Eco47I GGWCC 2 cut(s) 166, 577
Eco47III AGCGCT 1 cut(s) 1490
Eco57I CTGAAG 1 cut(s) 398
Eco88I CYCGRG 1 cut(s) 939
EcoRII CCWGG 2 cut(s) 292, 1481
EcoT14I CCWWGG 2 cut(s) 29, 722
EcoT38I GRGCYC 1 cut(s) 946
ErhI CCWWGG 2 cut(s) 29, 722
FaeI CATG 3 cut(s) 428, 588, 1105
FalI AAGNNNNNCTT 6 cut(s) 104, 136, 296, 328, 317, 349
FatI CATG 3 cut(s) 424, 584, 1101
FbaI TGATCA 2 cut(s) 3, 673
Fnu4HI GCNGC 2 cut(s) 255, 1506
FokI GGATG 3 cut(s) 299, 572, 1358
FriOI GRGCYC 1 cut(s) 946
Fsp4HI GCNGC 2 cut(s) 255, 1506
FspBI CTAG 4 cut(s) 126, 723, 1083, 1406
GlaI GCGC 1 cut(s) 1490
GluI GCNGC 2 cut(s) 255, 1506
GsaI CCCAGC 2 cut(s) 368, 1144
GsuI CTGGAG 1 cut(s) 1139
HaeII RGCGCY 1 cut(s) 1492
HaeIII GGCC 4 cut(s) 136, 191, 589, 1075
HapII CCGG 1 cut(s) 1375
HgaI GACGC 1 cut(s) 63
HhaI GCGC 1 cut(s) 1491
Hin1II CATG 3 cut(s) 428, 588, 1105
Hin6I GCGC 1 cut(s) 1489
HinP1I GCGC 1 cut(s) 1489
HinfI GANTC 3 cut(s) 542, 710, 1342
HpaII CCGG 1 cut(s) 1375
HphI GGTGA 1 cut(s) 496
Hpy166II GTNNAC 3 cut(s) 607, 1208, 1354
Hpy188I TCNGA 7 cut(s) 301, 378, 402, 715, 741, 948, 1390
Hpy188III TCNNGA 8 cut(s) 59, 108, 322, 467, 638, 1375, 1400, 1433
Hpy8I GTNNAC 3 cut(s) 607, 1208, 1354
HpyAV CCTTC 3 cut(s) 373, 793, 965
HpyCH4III ACNGT 2 cut(s) 1048, 1283
HpyCH4IV ACGT 1 cut(s) 397
HpyCH4V TGCA 9 cut(s) 80, 584, 632, 650, 754, 781, 1005, 1032, 1148
HpyF10VI GCNNNNNNNGC 4 cut(s) 275, 656, 1229, 1514
HpySE526I ACGT 1 cut(s) 397
Hsp92II CATG 3 cut(s) 428, 588, 1105
HspAI GCGC 1 cut(s) 1489
Kpn2I TCCGGA 1 cut(s) 1374
Ksp22I TGATCA 2 cut(s) 3, 673
Kzo9I GATC 9 cut(s) 3, 309, 421, 673, 700, 718, 948, 1077, 1396
LguI GCTCTTC 2 cut(s) 909, 912
LmnI GCTCC 1 cut(s) 216
Lsp1109I GCAGC 2 cut(s) 241, 1492
LweI GCATC 7 cut(s) 89, 382, 637, 641, 763, 790, 1381
MaeI CTAG 4 cut(s) 126, 723, 1083, 1406
MaeII ACGT 1 cut(s) 397
MaeIII GTNAC 2 cut(s) 116, 504
MalI GATC 9 cut(s) 5, 311, 423, 675, 702, 720, 950, 1079, 1398
MboI GATC 9 cut(s) 3, 309, 421, 673, 700, 718, 948, 1077, 1396
MboII GAAGA 9 cut(s) 75, 896, 929, 1168, 1333, 1375, 1448, 1466, 1508
MflI RGATCY 3 cut(s) 309, 700, 718
MhlI GDGCHC 3 cut(s) 924, 946, 1538
MlsI TGGCCA 2 cut(s) 191, 589
MluNI TGGCCA 2 cut(s) 191, 589
MmeI TCCRAC 1 cut(s) 678
Mox20I TGGCCA 2 cut(s) 191, 589
MroI TCCGGA 1 cut(s) 1374
MroXI GAANNNNTTC 3 cut(s) 497, 615, 1382
MscI TGGCCA 2 cut(s) 191, 589
MseI TTAA 5 cut(s) 450, 912, 1064, 1268, 1461
Msp20I TGGCCA 2 cut(s) 191, 589
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 1375
MspR9I CCNGG 2 cut(s) 294, 1483
Mva1269I GAATGC 1 cut(s) 97
MvaI CCWGG 2 cut(s) 294, 1483
MvnI CGCG 2 cut(s) 146, 184
MwoI GCNNNNNNNGC 4 cut(s) 275, 656, 1229, 1514
NdeII GATC 9 cut(s) 3, 309, 421, 673, 700, 718, 948, 1077, 1396
NlaIII CATG 3 cut(s) 428, 588, 1105
NlaIV GGNNCC 3 cut(s) 579, 720, 1170
NmuCI GTSAC 2 cut(s) 116, 504
NspV TTCGAA 1 cut(s) 230
PciSI GCTCTTC 2 cut(s) 909, 912
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 1 cut(s) 97
PdmI GAANNNNTTC 3 cut(s) 497, 615, 1382
PfeI GAWTC 3 cut(s) 542, 710, 1342
PkrI GCNGC 2 cut(s) 256, 1507
PsiI TTATAA 1 cut(s) 1052
Psp6I CCWGG 2 cut(s) 292, 1481
PspFI CCCAGC 2 cut(s) 364, 1140
PspGI CCWGG 2 cut(s) 292, 1481
PspN4I GGNNCC 3 cut(s) 579, 720, 1170
PspPI GGNCC 2 cut(s) 166, 577
PstI CTGCAG 1 cut(s) 1150
PstNI CAGNNNCTG 1 cut(s) 299
PsuI RGATCY 3 cut(s) 309, 700, 718
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 4 cut(s) 156, 608, 668, 983
RsaNI GTAC 4 cut(s) 155, 607, 667, 982
SapI GCTCTTC 2 cut(s) 909, 912
SaqAI TTAA 5 cut(s) 450, 912, 1064, 1268, 1461
SatI GCNGC 2 cut(s) 255, 1506
Sau3AI GATC 9 cut(s) 3, 309, 421, 673, 700, 718, 948, 1077, 1396
Sau96I GGNCC 2 cut(s) 166, 577
ScrFI CCNGG 2 cut(s) 294, 1483
SduI GDGCHC 3 cut(s) 924, 946, 1538
SfaNI GCATC 7 cut(s) 89, 382, 637, 641, 763, 790, 1381
SfcI CTRYAG 1 cut(s) 1146
SfuI TTCGAA 1 cut(s) 230
SinI GGWCC 2 cut(s) 166, 577
SmlI CTYRAG 3 cut(s) 410, 689, 1198
SmoI CTYRAG 3 cut(s) 410, 689, 1198
SpeI ACTAGT 1 cut(s) 1082
SsiI CCGC 1 cut(s) 1180
SspMI CTAG 4 cut(s) 126, 723, 1083, 1406
StyD4I CCNGG 2 cut(s) 292, 1481
StyI CCWWGG 2 cut(s) 29, 722
TaaI ACNGT 2 cut(s) 1048, 1283
TaiI ACGT 1 cut(s) 400
TaqI TCGA 1 cut(s) 230
TfiI GAWTC 3 cut(s) 542, 710, 1342
Tru1I TTAA 5 cut(s) 450, 912, 1064, 1268, 1461
Tru9I TTAA 5 cut(s) 450, 912, 1064, 1268, 1461
TscAI CASTG 4 cut(s) 364, 445, 1343, 1538
TseFI GTSAC 2 cut(s) 116, 504
TseI GCWGC 2 cut(s) 254, 1505
Tsp45I GTSAC 2 cut(s) 116, 504
TspDTI ATGAA 7 cut(s) 75, 279, 468, 781, 817, 1266, 1455
TspGWI ACGGA 2 cut(s) 812, 1055
TspRI CASTG 4 cut(s) 364, 445, 1343, 1538
VpaK11BI GGWCC 2 cut(s) 166, 577
XapI RAATTY 6 cut(s) 226, 446, 493, 611, 1151, 1427
XmaJI CCTAGG 1 cut(s) 722
XmnI GAANNNNTTC 3 cut(s) 497, 615, 1382
XspI CTAG 4 cut(s) 126, 723, 1083, 1406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.