Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001984

Physical Location & Seq

Genomic Coordinates Reverse (-)

4638468 .. 4642190

Gene Structure 3723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGTTACATAGGAGCTCATGGTGTAGCAGCTCTTCATAGGTACAAATACAGTGGAGTGGATCACTCTTATCTTGCCAAATACGTCCTCCAACCTTTTTGGACTCGATTTGTCAAAGTCTTCCCTCTATGGATGCCACCAAACATGATAACGCTTATGGGGTTTATGTTTCTAGTCACTTCCTCCCTGCTAGGCTATATATATTCACCTCAGTTGGATTCTCCTCCTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAGACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATGGTTGTGACGCGCTTGCTTGTGCGTTTGAAGCCATGGCATTTGGAAGCACTGCAATGTGTGGAAGAGATACTTTCTGGTTCTGGGTTATTTCAGCTATTCCATTTTATGGAGCTACATGGGAACACTATTTCACCAACACACTTATTCTTCCGGTTATCAATGGGCCTACAGAGGGGCTTGCACTTATATTTGTCAGCCACTTCTTCACAGCCATCGTCGGTGCTGAATGGTGGGCTCAGCAGTTAGGGCAGTCAATACCATTGTTTAGTTGGGTGCCATTTGTGAATGAGATTCAAACTTCTAGAGCAGTGCTATACATGATGATCGCTTTTGCTGTTATACCAACCGTTGCATTCAATGTAACAAATGTCTACAAAGTCGTTCGATCAAGAAACGGGAGCATGGTGTTAGCGTTAGCTATGCTGTATCCCTTCGTTGTCTTACTTGGAGGAGTTTTGATATGGGATTACTTGTCTCCAATCAATCTCATAGCAACATATCCTCACTTAGTTGTACTCGGAACTGGACTTGCATTTGGATTTTTAGTGGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACAAACATGTGCATGTCACTACTCTATCTTCCCTTTGCACTTGCAAATGCGCTAACCGCAAGATTGAATGCTGGGGTTCCTCTAGTCGACGAATTATGGGTTCTTCTTGGCTACTGCATATTCACAGTGTCATTATACTTGCACTTTGCAACATCAGTCATCCATGAGATCACTGAGGCCCTTGGAATCTACTGCTTTAGGATCACGCGTAAAGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko00565 ko01100 ko01110 map00440 map00564 map00565 map01100 map01110

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

389

Amino Acids

43.54

Weight (kDa)

7.18

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	7 - 107	7.7e-06	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13560 AT1G13560 AT1G13560 AT3G25585 AT3G25585 AT3G25585 AT3G25585 AT3G25585 AT3G25585
fragaria_vesca	FvH4_4g28600 FvH4_4g28600
malus_domestica	MD12G1007000.v1.1 MD16G1057500.v1.1
prunus_persica	Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1
pyrus_communis	pycom03g00010 pycom12g00510 pycom16g05030
rosa_chinensis	RchiOBHm_Chr4g0436691
rosa_laevigata	RLG00000006503
rosa_multiflora	Rmu_sc0016627.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377770
rosa_rugosa	Rorug04G0295300 Rorug04G0295400
rosa_samantha	Rh4AG349800 Rh4BG358500 Rh4CG372900 Rh4DG352700
rosa_wichuraiana	Rw4G030600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	625
AccB7I	CCANNNNNTGG	1 cut(s)	458
AccI	GTMKAC	2 cut(s)	723, 1035
AccII	CGCG	2 cut(s)	362, 1156
AciI	CCGC	2 cut(s)	287, 1005
AclWI	GGATC	2 cut(s)	69, 1157
AcsI	RAATTY	1 cut(s)	316
AfaI	GTAC	2 cut(s)	44, 867
AfiI	CCNNNNNNNGG	2 cut(s)	458, 524
AflIII	ACRYGT	2 cut(s)	954, 1154
AgsI	TTSAA	4 cut(s)	380, 647, 709, 1015
AleI	CACNNNNGTG	1 cut(s)	924
AluBI	AGCT	7 cut(s)	17, 32, 340, 446, 464, 770, 1166
AluI	AGCT	7 cut(s)	17, 32, 340, 446, 464, 770, 1166
Alw21I	GWGCWC	2 cut(s)	19, 342
Alw26I	GTCTC	1 cut(s)	831
AlwI	GGATC	2 cut(s)	69, 1157
AoxI	GGCC	2 cut(s)	515, 1125
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	316
AspA2I	CCTAGG	1 cut(s)	331
AspLEI	GCGC	2 cut(s)	364, 1000
AspS9I	GGNCC	2 cut(s)	515, 1126
AsuHPI	GGTGA	2 cut(s)	198, 475
AvrII	CCTAGG	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	625
BanII	GRGCYC	3 cut(s)	19, 342, 589
BarI	GAAGNNNNNNTAC	2 cut(s)	18, 50
BbsI	GAAGAC	1 cut(s)	112
Bbv12I	GWGCWC	2 cut(s)	19, 342
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	3 cut(s)	228, 287, 572
BciVI	GTATCC	1 cut(s)	789
BcoDI	GTCTC	1 cut(s)	831
BfaI	CTAG	6 cut(s)	173, 191, 324, 332, 654, 1031
BfmI	CTRYAG	1 cut(s)	519
BfuI	GTATCC	1 cut(s)	789
BisI	GCNGC	1 cut(s)	30
BlnI	CCTAGG	1 cut(s)	331
BlpI	GCTNAGC	1 cut(s)	588
BlsI	GCNGC	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	515, 1126
BmiI	GGNNCC	2 cut(s)	627, 1026
BmsI	GCATC	2 cut(s)	123, 274
BpiI	GAAGAC	1 cut(s)	112
Bpu1102I	GCTNAGC	1 cut(s)	588
BsaJI	CCNNGG	3 cut(s)	331, 384, 1129
BsaWI	WCCGGW	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	2 cut(s)	458, 524
Bse1I	ACTGG	1 cut(s)	880
Bse3DI	GCAATG	1 cut(s)	411
BseDI	CCNNGG	3 cut(s)	331, 384, 1129
BseGI	GGATG	2 cut(s)	138, 1107
BseLI	CCNNNNNNNGG	2 cut(s)	458, 524
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	3 cut(s)	224, 602, 1113
BseNI	ACTGG	1 cut(s)	880
BseRI	GAGGAG	3 cut(s)	213, 216, 816
BseXI	GCAGC	1 cut(s)	41
BseYI	CCCAGC	1 cut(s)	1019
Bsh1236I	CGCG	2 cut(s)	362, 1156
BshFI	GGCC	2 cut(s)	517, 1127
BshNI	GGYRCC	1 cut(s)	625
BsiHKAI	GWGCWC	2 cut(s)	19, 342
BsiSI	CCGG	1 cut(s)	503
BslI	CCNNNNNNNGG	2 cut(s)	458, 524
BsmAI	GTCTC	1 cut(s)	831
BsmI	GAATGC	2 cut(s)	704, 1021
BsnI	GGCC	2 cut(s)	517, 1127
Bsp1286I	GDGCHC	3 cut(s)	19, 342, 589
Bsp143I	GATC	6 cut(s)	61, 346, 675, 737, 1116, 1149
Bsp1720I	GCTNAGC	1 cut(s)	588
Bsp19I	CCATGG	1 cut(s)	384
BspACI	CCGC	2 cut(s)	287, 1005
BspANI	GGCC	2 cut(s)	517, 1127
BspCNI	CTCAG	3 cut(s)	223, 601, 1114
BspFNI	CGCG	2 cut(s)	362, 1156
BspLI	GGNNCC	2 cut(s)	627, 1026
BspPI	GGATC	2 cut(s)	69, 1157
BspQI	GCTCTTC	2 cut(s)	39, 347
BspT107I	GGYRCC	1 cut(s)	625
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	880
BssECI	CCNNGG	3 cut(s)	331, 384, 1129
BssMI	GATC	6 cut(s)	61, 346, 675, 737, 1116, 1149
BssT1I	CCWWGG	3 cut(s)	331, 384, 1129
Bst4CI	ACNGT	3 cut(s)	53, 700, 1075
Bst6I	CTCTTC	4 cut(s)	39, 269, 347, 409
BstC8I	GCNNGC	3 cut(s)	303, 366, 531
BstDEI	CTNAG	4 cut(s)	210, 588, 859, 1122
BstDSI	CCRYGG	1 cut(s)	384
BstF5I	GGATG	2 cut(s)	138, 1107
BstFNI	CGCG	2 cut(s)	362, 1156
BstHHI	GCGC	2 cut(s)	364, 1000
BstKTI	GATC	6 cut(s)	64, 349, 678, 740, 1119, 1152
BstMAI	GTCTC	1 cut(s)	831
BstMBI	GATC	6 cut(s)	61, 346, 675, 737, 1116, 1149
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 598, 1004
BstNSI	RCATGY	2 cut(s)	958, 964
BstSFI	CTRYAG	1 cut(s)	519
BstUI	CGCG	2 cut(s)	362, 1156
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	112
BsuI	GTATCC	1 cut(s)	789
BsuRI	GGCC	2 cut(s)	517, 1127
BtgI	CCRYGG	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	138, 1107
BtsI	GCAGTG	2 cut(s)	399, 666
BtsIMutI	CAGTG	5 cut(s)	58, 399, 666, 1080, 1119
Cac8I	GCNNGC	3 cut(s)	303, 366, 531
CfoI	GCGC	2 cut(s)	364, 1000
Cfr13I	GGNCC	2 cut(s)	515, 1126
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	43, 866
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviQI	GTAC	2 cut(s)	43, 866
DdeI	CTNAG	4 cut(s)	210, 588, 859, 1122
DpnI	GATC	6 cut(s)	63, 348, 677, 739, 1118, 1151
DpnII	GATC	6 cut(s)	61, 346, 675, 737, 1116, 1149
Eam1104I	CTCTTC	4 cut(s)	39, 269, 347, 409
EarI	CTCTTC	4 cut(s)	39, 269, 347, 409
Ecl136II	GAGCTC	2 cut(s)	17, 340
Eco130I	CCWWGG	3 cut(s)	331, 384, 1129
Eco24I	GRGCYC	3 cut(s)	19, 342, 589
Eco53kI	GAGCTC	2 cut(s)	17, 340
EcoICRI	GAGCTC	2 cut(s)	17, 340
EcoO109I	RGGNCCY	1 cut(s)	1126
EcoT14I	CCWWGG	3 cut(s)	331, 384, 1129
EcoT38I	GRGCYC	3 cut(s)	19, 342, 589
ErhI	CCWWGG	3 cut(s)	331, 384, 1129
FalI	AAGNNNNNCTT	2 cut(s)	406, 438
FblI	GTMKAC	2 cut(s)	723, 1035
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	2 cut(s)	145, 1094
FriOI	GRGCYC	3 cut(s)	19, 342, 589
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	6 cut(s)	173, 191, 324, 332, 654, 1031
GlaI	GCGC	2 cut(s)	363, 999
GluI	GCNGC	1 cut(s)	30
GsaI	CCCAGC	1 cut(s)	1023
HaeIII	GGCC	2 cut(s)	517, 1127
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	2 cut(s)	364, 1000
Hin6I	GCGC	2 cut(s)	362, 998
HinP1I	GCGC	2 cut(s)	362, 998
HincII	GTYRAC	1 cut(s)	1036
HindII	GTYRAC	1 cut(s)	1036
HindIII	AAGCTT	1 cut(s)	1164
HinfI	GANTC	5 cut(s)	103, 218, 643, 910, 1134
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	2 cut(s)	198, 475
Hpy166II	GTNNAC	4 cut(s)	241, 257, 724, 1036
Hpy188I	TCNGA	2 cut(s)	276, 872
Hpy188III	TCNNGA	2 cut(s)	654, 741
Hpy8I	GTNNAC	4 cut(s)	241, 257, 724, 1036
Hpy99I	CGWCG	2 cut(s)	572, 1040
HpyAV	CCTTC	2 cut(s)	303, 793
HpyCH4III	ACNGT	3 cut(s)	53, 700, 1075
HpyCH4IV	ACGT	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 598, 1004
HpyF3I	CTNAG	4 cut(s)	210, 588, 859, 1122
HpySE526I	ACGT	1 cut(s)	84
HspAI	GCGC	2 cut(s)	362, 998
Kzo9I	GATC	6 cut(s)	61, 346, 675, 737, 1116, 1149
LguI	GCTCTTC	2 cut(s)	39, 347
LmnI	GCTCC	3 cut(s)	14, 461, 750
LpnPI	CCDG	6 cut(s)	200, 412, 418, 516, 861, 1005
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	2 cut(s)	123, 274
MaeI	CTAG	6 cut(s)	173, 191, 324, 332, 654, 1031
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	5 cut(s)	5, 175, 356, 712, 963
MalI	GATC	6 cut(s)	63, 348, 677, 739, 1118, 1151
MboI	GATC	6 cut(s)	61, 346, 675, 737, 1116, 1149
MhlI	GDGCHC	3 cut(s)	19, 342, 589
MluCI	AATT	2 cut(s)	316, 1040
MluI	ACGCGT	1 cut(s)	1154
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	2 cut(s)	115, 195
MslI	CAYNNNNRTG	4 cut(s)	354, 404, 924, 959
MspI	CCGG	1 cut(s)	503
Mva1269I	GAATGC	2 cut(s)	704, 1021
MvnI	CGCG	2 cut(s)	362, 1156
MwoI	GCNNNNNNNGC	3 cut(s)	380, 598, 1004
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	6 cut(s)	61, 346, 675, 737, 1116, 1149
NlaIV	GGNNCC	2 cut(s)	627, 1026
NmuCI	GTSAC	3 cut(s)	175, 356, 963
NspI	RCATGY	2 cut(s)	958, 964
OliI	CACNNNNGTG	1 cut(s)	924
PciI	ACATGT	1 cut(s)	954
PciSI	GCTCTTC	2 cut(s)	39, 347
PctI	GAATGC	2 cut(s)	704, 1021
PfeI	GAWTC	4 cut(s)	218, 643, 910, 1134
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PscI	ACATGT	1 cut(s)	954
Psp124BI	GAGCTC	2 cut(s)	19, 342
PspFI	CCCAGC	1 cut(s)	1019
PspN4I	GGNNCC	2 cut(s)	627, 1026
PspPI	GGNCC	2 cut(s)	515, 1126
RsaI	GTAC	2 cut(s)	44, 867
RsaNI	GTAC	2 cut(s)	43, 866
RseI	CAYNNNNRTG	4 cut(s)	354, 404, 924, 959
SacI	GAGCTC	2 cut(s)	19, 342
SalI	GTCGAC	1 cut(s)	1034
SapI	GCTCTTC	2 cut(s)	39, 347
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	6 cut(s)	61, 346, 675, 737, 1116, 1149
Sau96I	GGNCC	2 cut(s)	515, 1126
SchI	GAGTC	1 cut(s)	97
SduI	GDGCHC	3 cut(s)	19, 342, 589
SfaNI	GCATC	2 cut(s)	123, 274
SfcI	CTRYAG	1 cut(s)	519
SmiMI	CAYNNNNRTG	4 cut(s)	354, 404, 924, 959
Sse9I	AATT	2 cut(s)	316, 1040
SsiI	CCGC	2 cut(s)	287, 1005
SspMI	CTAG	6 cut(s)	173, 191, 324, 332, 654, 1031
SstI	GAGCTC	2 cut(s)	19, 342
StyI	CCWWGG	3 cut(s)	331, 384, 1129
TaaI	ACNGT	3 cut(s)	53, 700, 1075
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	4 cut(s)	106, 345, 736, 1035
TasI	AATT	2 cut(s)	316, 1040
TatI	WGTACW	1 cut(s)	865
TfiI	GAWTC	4 cut(s)	218, 643, 910, 1134
TscAI	CASTG	5 cut(s)	58, 406, 666, 1080, 1126
TseFI	GTSAC	3 cut(s)	175, 356, 963
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	3 cut(s)	175, 356, 963
TspDTI	ATGAA	1 cut(s)	26
TspRI	CASTG	5 cut(s)	58, 406, 666, 1080, 1126
Van91I	CCANNNNNTGG	1 cut(s)	458
XapI	RAATTY	1 cut(s)	316
XbaI	TCTAGA	1 cut(s)	653
XceI	RCATGY	2 cut(s)	958, 964
XcmI	CCANNNNNNNNNTGG	1 cut(s)	618
XmaJI	CCTAGG	1 cut(s)	331
XmiI	GTMKAC	2 cut(s)	723, 1035
XspI	CTAG	6 cut(s)	173, 191, 324, 332, 654, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.