MD12G1007000.v1.1

Belongs to the CDP-alcohol phosphatidyltransferase class-I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0001984
Physical Location & Seq
Forward (+)
788962 .. 794551
5590 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1007000.v1.1.491

Sequence Viewer

Length: 1170 bp
ATGGGGTATATTGGGGCACATGGTGTGACTGCTTTGCATAAATACAAGTACAGTGGCGTGGATCACTCTTACACTGCCAAATATGTCTTGCAACCCTTTTGGAGTAGCTTCGTTAAAATCTTTCCCCTTTGGATGCCGCCCAACATGATAACTCTAACAGGATTCATGTTCTTGCTCACATCTGCTCTGCTTGGCCATATATATTCACCACGACTGGATTCAGCTCCTCCTAGATGGGTTAATTTCGCTCATGGATTGCTACTTTTCTTATACCAGACCTTTGATGCCGTTGATGGGAAACAAGCAAGACGGACAAATTCCTCGAGTCCACTAGGGGAACTTTTTGACCATGGTTGTGATGCCCTTGCGTGTGCGTTCGAAGCATTGGCCTTTGGAAGTACTGCAATGTGTGGAAGATCTACTTTCTGGTTCTGGGTGATTTCAGCTGTTCCATTTTACTTTGCTACTTGGGAGTCTTACTTTACCAATACCCTAATCCTTCCTGCTGTTAATGGGCCCACGGAGGGTCTAATGCTGATATATTTGGCCCATTTTTTCACAGCTATCGTTGGTTCTGAGTGGTGGGCTCTACAATTTGGAAAGTCTTTGCCTTTTCTGAGTTGGGTCCCCATTCTTAGTGAAATCCCAACATACAAAGCTGTGTTGTATCTAATGATAGCTTTTGCTGTCATCCCAACGCTCACATTCAATGTATCCAATGTTCATAAGGTTGTTCAAGCAAGGAAAGCAAGTATGATATTGGCACTGGCAATGATTTACCCTTTTGTAGTCCTTTTGGTAGGAGTTTTGGCATGGGGTTACTTGTCACCAGCTGACATTGTGGGGAACTATCCACATTTAGTCGTTTTGGGAAGTGGGCTTGCTTTTGGGTACCTTGTGGGAAGATTGATTCTTGCGCACTTGTGTGATGAGCCAAAGGGTTTGAAAACTGGAATGTGCATGTCATTGTTGTATCTTCCATTTGCCATTGCAAATGCACTCACAGCTAAACTGAACGATGGAGTTCCTTTGGTTGATGAGAGCTTGGTTCTTCTTGGTTACTGTGCATTTACAGCGACACTCTATCTTCACTTTGCAACGTCAGTCATTCACGAGATCACAACAGCCTTGGGAATCTATTGCTTTAGGATAACTAGGAAGGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko00565 ko01100 ko01110 map00440 map00564 map00565 map01100 map01110
Pfam Domains
Protein Families
CDP-OH_P_transf

Protein Analysis

390

Amino Acids

43.03

Weight (kDa)

8.09

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDP-OH_P_transf PF01066 45 - 154 3.8e-09 CDP-alcohol phosphatidyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 918
Acc65I GGTACC 1 cut(s) 891
AccB1I GGYRCC 1 cut(s) 891
AciI CCGC 1 cut(s) 137
AclWI GGATC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 1 cut(s) 316
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 3 cut(s) 50, 400, 893
AfiI CCNNNNNNNGG 2 cut(s) 294, 524
AgsI TTSAA 3 cut(s) 709, 737, 946
AleI CACNNNNGTG 1 cut(s) 924
AlwI GGATC 1 cut(s) 69
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 4 cut(s) 193, 387, 515, 546
ApaI GGGCCC 1 cut(s) 519
ApoI RAATTY 1 cut(s) 316
Asp718I GGTACC 1 cut(s) 891
AspLEI GCGC 1 cut(s) 919
AspS9I GGNCC 4 cut(s) 515, 516, 547, 625
AsuHPI GGTGA 3 cut(s) 198, 448, 819
AsuII TTCGAA 1 cut(s) 378
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 1 cut(s) 625
BaeGI GKGCMC 2 cut(s) 19, 519
BalI TGGCCA 1 cut(s) 195
BanI GGYRCC 1 cut(s) 891
BanII GRGCYC 2 cut(s) 519, 589
BauI CACGAG 1 cut(s) 1112
BccI CCATC 3 cut(s) 228, 287, 1013
BceAI ACGGC 1 cut(s) 272
BciVI GTATCC 1 cut(s) 724
BfaI CTAG 3 cut(s) 231, 332, 1155
BfuI GTATCC 1 cut(s) 724
BglII AGATCT 1 cut(s) 416
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
BmcAI AGTACT 1 cut(s) 400
Bme18I GGWCC 1 cut(s) 625
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 4 cut(s) 515, 516, 547, 625
BmiI GGNNCC 4 cut(s) 517, 626, 627, 893
BmsI GCATC 3 cut(s) 123, 274, 349
Bpu14I TTCGAA 1 cut(s) 378
BsaJI CCNNGG 3 cut(s) 349, 519, 1128
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 524
Bse1I ACTGG 3 cut(s) 219, 771, 955
Bse3DI GCAATG 3 cut(s) 411, 777, 987
BseDI CCNNGG 3 cut(s) 349, 519, 1128
BseGI GGATG 2 cut(s) 138, 690
BseLI CCNNNNNNNGG 2 cut(s) 294, 524
BseMI GCAATG 3 cut(s) 411, 777, 987
BseMII CTCAG 2 cut(s) 567, 608
BseNI ACTGG 3 cut(s) 219, 771, 955
BseRI GAGGAG 1 cut(s) 216
BseSI GKGCMC 2 cut(s) 19, 519
BshFI GGCC 4 cut(s) 195, 389, 517, 548
BshNI GGYRCC 1 cut(s) 891
BsiHKCI CYCGRG 1 cut(s) 322
BslFI GGGAC 1 cut(s) 611
BslI CCNNNNNNNGG 2 cut(s) 294, 524
BsmFI GGGAC 1 cut(s) 611
BsnI GGCC 4 cut(s) 195, 389, 517, 548
BsoBI CYCGRG 1 cut(s) 322
Bsp119I TTCGAA 1 cut(s) 378
Bsp120I GGGCCC 1 cut(s) 515
Bsp1286I GDGCHC 3 cut(s) 19, 519, 589
Bsp143I GATC 3 cut(s) 61, 416, 1116
Bsp19I CCATGG 1 cut(s) 349
BspACI CCGC 1 cut(s) 137
BspANI GGCC 4 cut(s) 195, 389, 517, 548
BspCNI CTCAG 2 cut(s) 568, 609
BspLI GGNNCC 4 cut(s) 517, 626, 627, 893
BspPI GGATC 1 cut(s) 69
BspT104I TTCGAA 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 891
BsrDI GCAATG 3 cut(s) 411, 777, 987
BsrI ACTGG 3 cut(s) 219, 771, 955
BssECI CCNNGG 3 cut(s) 349, 519, 1128
BssMI GATC 3 cut(s) 61, 416, 1116
BssSI CACGAG 1 cut(s) 1112
BssT1I CCWWGG 2 cut(s) 349, 1128
Bst2BI CACGAG 1 cut(s) 1112
Bst4CI ACNGT 2 cut(s) 53, 1064
BstBI TTCGAA 1 cut(s) 378
BstC8I GCNNGC 1 cut(s) 882
BstDEI CTNAG 3 cut(s) 576, 617, 635
BstDSI CCRYGG 2 cut(s) 349, 519
BstF5I GGATG 2 cut(s) 138, 690
BstHHI GCGC 1 cut(s) 919
BstKTI GATC 3 cut(s) 64, 419, 1119
BstMBI GATC 3 cut(s) 61, 416, 1116
BstMWI GCNNNNNNNGC 4 cut(s) 380, 746, 1004, 1073
BstNSI RCATGY 1 cut(s) 964
BstSLI GKGCMC 2 cut(s) 19, 519
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
BsuI GTATCC 1 cut(s) 724
BsuRI GGCC 4 cut(s) 195, 389, 517, 548
BtgI CCRYGG 2 cut(s) 349, 519
BtsCI GGATG 2 cut(s) 138, 690
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 3 cut(s) 58, 72, 764
Cac8I GCNNGC 1 cut(s) 882
CfoI GCGC 1 cut(s) 919
Cfr13I GGNCC 4 cut(s) 515, 516, 547, 625
Csp6I GTAC 3 cut(s) 49, 399, 892
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 7 cut(s) 20, 145, 166, 251, 350, 813, 961
CviQI GTAC 3 cut(s) 49, 399, 892
DdeI CTNAG 3 cut(s) 576, 617, 635
DpnI GATC 3 cut(s) 63, 418, 1118
DpnII GATC 3 cut(s) 61, 416, 1116
DraIII CACNNNGTG 1 cut(s) 23
EaeI YGGCCR 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 349, 1128
Eco24I GRGCYC 2 cut(s) 519, 589
Eco47I GGWCC 1 cut(s) 625
Eco88I CYCGRG 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 625
EcoT14I CCWWGG 2 cut(s) 349, 1128
EcoT38I GRGCYC 2 cut(s) 519, 589
ErhI CCWWGG 2 cut(s) 349, 1128
FaeI CATG 7 cut(s) 23, 148, 169, 254, 353, 816, 964
FalI AAGNNNNNCTT 2 cut(s) 406, 438
FaqI GGGAC 1 cut(s) 611
FatI CATG 7 cut(s) 19, 144, 165, 250, 349, 812, 960
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 2 cut(s) 145, 677
FriOI GRGCYC 2 cut(s) 519, 589
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 3 cut(s) 231, 332, 1155
FspI TGCGCA 1 cut(s) 918
GlaI GCGC 1 cut(s) 918
GluI GCNGC 1 cut(s) 137
HaeIII GGCC 4 cut(s) 195, 389, 517, 548
HhaI GCGC 1 cut(s) 919
Hin1II CATG 7 cut(s) 23, 148, 169, 254, 353, 816, 964
Hin6I GCGC 1 cut(s) 917
HinP1I GCGC 1 cut(s) 917
HindIII AAGCTT 1 cut(s) 1164
HinfI GANTC 6 cut(s) 162, 218, 325, 473, 910, 1134
HphI GGTGA 3 cut(s) 198, 448, 819
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 2 cut(s) 577, 618
Hpy188III TCNNGA 1 cut(s) 1112
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 2 cut(s) 509, 1153
HpyCH4III ACNGT 2 cut(s) 53, 1064
HpyCH4IV ACGT 1 cut(s) 1100
HpyCH4V TGCA 8 cut(s) 37, 91, 404, 960, 992, 998, 1067, 1097
HpyF10VI GCNNNNNNNGC 4 cut(s) 380, 746, 1004, 1073
HpyF3I CTNAG 3 cut(s) 576, 617, 635
HpySE526I ACGT 1 cut(s) 1100
Hsp92II CATG 7 cut(s) 23, 148, 169, 254, 353, 816, 964
HspAI GCGC 1 cut(s) 917
KflI GGGWCCC 1 cut(s) 625
KpnI GGTACC 1 cut(s) 895
Kzo9I GATC 3 cut(s) 61, 416, 1116
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 9 cut(s) 144, 200, 287, 412, 418, 516, 752, 843, 936
LweI GCATC 3 cut(s) 123, 274, 349
MaeI CTAG 3 cut(s) 231, 332, 1155
MaeII ACGT 1 cut(s) 1100
MaeIII GTNAC 4 cut(s) 25, 818, 825, 1058
MalI GATC 3 cut(s) 63, 418, 1118
MboI GATC 3 cut(s) 61, 416, 1116
MboII GAAGA 5 cut(s) 426, 915, 968, 1043, 1079
MflI RGATCY 1 cut(s) 416
MhlI GDGCHC 3 cut(s) 19, 519, 589
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 3 cut(s) 241, 316, 593
MluNI TGGCCA 1 cut(s) 195
MlyI GAGTC 2 cut(s) 334, 482
MnlI CCTC 3 cut(s) 237, 331, 517
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
MseI TTAA 3 cut(s) 114, 240, 510
MslI CAYNNNNRTG 2 cut(s) 354, 924
Msp20I TGGCCA 1 cut(s) 195
MspA1I CMGCKG 2 cut(s) 446, 833
MwoI GCNNNNNNNGC 4 cut(s) 380, 746, 1004, 1073
NcoI CCATGG 1 cut(s) 349
NdeII GATC 3 cut(s) 61, 416, 1116
NlaIII CATG 7 cut(s) 23, 148, 169, 254, 353, 816, 964
NlaIV GGNNCC 4 cut(s) 517, 626, 627, 893
NmuCI GTSAC 2 cut(s) 25, 825
NsbI TGCGCA 1 cut(s) 918
NspI RCATGY 1 cut(s) 964
NspV TTCGAA 1 cut(s) 378
OliI CACNNNNGTG 1 cut(s) 924
PaeR7I CTCGAG 1 cut(s) 322
PfeI GAWTC 4 cut(s) 162, 218, 910, 1134
PkrI GCNGC 1 cut(s) 138
PleI GAGTC 2 cut(s) 333, 481
PpsI GAGTC 2 cut(s) 333, 481
PpuMI RGGWCCY 1 cut(s) 625
Psp5II RGGWCCY 1 cut(s) 625
PspN4I GGNNCC 4 cut(s) 517, 626, 627, 893
PspOMI GGGCCC 1 cut(s) 515
PspPI GGNCC 4 cut(s) 515, 516, 547, 625
PspPPI RGGWCCY 1 cut(s) 625
PspXI VCTCGAGB 1 cut(s) 322
PsrI GAACNNNNNNTAC 2 cut(s) 705, 737
PsuI RGATCY 1 cut(s) 416
PvuII CAGCTG 2 cut(s) 446, 833
RsaI GTAC 3 cut(s) 50, 400, 893
RsaNI GTAC 3 cut(s) 49, 399, 892
RseI CAYNNNNRTG 2 cut(s) 354, 924
SaqAI TTAA 3 cut(s) 114, 240, 510
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 3 cut(s) 61, 416, 1116
Sau96I GGNCC 4 cut(s) 515, 516, 547, 625
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 2 cut(s) 334, 482
SduI GDGCHC 3 cut(s) 19, 519, 589
SfaNI GCATC 3 cut(s) 123, 274, 349
Sfr274I CTCGAG 1 cut(s) 322
SfuI TTCGAA 1 cut(s) 378
SinI GGWCC 1 cut(s) 625
SlaI CTCGAG 1 cut(s) 322
SmiMI CAYNNNNRTG 2 cut(s) 354, 924
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 3 cut(s) 241, 316, 593
SsiI CCGC 1 cut(s) 137
SspMI CTAG 3 cut(s) 231, 332, 1155
StyI CCWWGG 2 cut(s) 349, 1128
TaaI ACNGT 2 cut(s) 53, 1064
TaiI ACGT 1 cut(s) 1103
TaqI TCGA 2 cut(s) 323, 378
TasI AATT 3 cut(s) 241, 316, 593
TatI WGTACW 2 cut(s) 48, 398
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 4 cut(s) 162, 218, 910, 1134
Tru1I TTAA 3 cut(s) 114, 240, 510
Tru9I TTAA 3 cut(s) 114, 240, 510
TscAI CASTG 3 cut(s) 58, 79, 771
TseFI GTSAC 2 cut(s) 25, 825
Tsp45I GTSAC 2 cut(s) 25, 825
TspDTI ATGAA 2 cut(s) 154, 713
TspGWI ACGGA 2 cut(s) 325, 536
TspRI CASTG 3 cut(s) 58, 79, 771
VpaK11BI GGWCC 1 cut(s) 625
XapI RAATTY 1 cut(s) 316
XceI RCATGY 1 cut(s) 964
XhoI CTCGAG 1 cut(s) 322
XspI CTAG 3 cut(s) 231, 332, 1155
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.