Rw4G030600

Belongs to the CDP-alcohol phosphatidyltransferase class-I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001984
Physical Location & Seq
Reverse (-)
57316887 .. 57322944
6058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G030600.1

Sequence Viewer

Length: 1170 bp
ATGGGATATATTGGGGCACATGGTGTGAATGCTTTGCACAGATACAAGTATAGTGGTGTGGATCACTCCTTGGTCTCCAAATATGTCTTGAATCCCTTCTGGACACGCTTTGTTAACTTCTTTCCCCTATGGATGCCGCCAAACATGATAACACTTACAGGGTTCATGTTCTTGCTCACATCTGCGCTGCTTGGCTATATATATTCACCAAGATTGGATTCTGCTCCACCTAGATGGGTCAATTTTGCTCATGGATTGCTTCTTTTCCTATACCAGACCTTTGATGCTGTTGATGGCAAGCAAGCCAGACGAACAAATTCCTCAAGTCCACTGGGGGAACTTTTTGACCATGGATGTGATGCCCTTGCATGTGCGCTTGAAGCGTTGGCTTTTGGGAGCACTGCAATGTGTGGAAGGAACACTTTCTGGTTCTGGGTGATTTCAGCCGTTCCATTTTACTTTGCAACTTGGGAGCATTACTTCACCAATACCCTAATACTTCCTGCCTTGAATGGGCCCACAGAGGGTCTCATGCTGATATATTTGAGTCACTGTTTCACAGCTTTTGTTGGTTCTGAGTGGTGGGCTCAGCCATTTGGAAATTCTTTGCCTGTTCTGAGCTGGATCCCTTTTCTAAGTGAAATTACGATGGCCAACGCTGTGTTGTTTCTAATGATAGCTTTCGCTGTTATCCCAACAGTAACATTCAATGTTATGAATGTTTATAAGGTCGTCCAGGCAAGGAAAGGCAGCATGCTATTGGCACTGGCGATGCTTTATCCTTTTGCTGTTCTTTTGGGAGTAGTTTTGGCATGGGATTATTTGTCACCAGCTGGCATCATGAGGAACTATCCACATTTAGTCGTAATGGGAACTGGGCTTGCTTTTGGGTACCTTGTGGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCAAAGGGCTTGAAAACTGGAATGTGCATGTCATTGTTGTATCTCCCATTTGCCATTGCAAATGCACTCACAGCTAGACTGAACGACGGTGTTCCATTGGTTGATGACAGTTTGGTTCTCCTCGGTTACTGTGCATTTACAGTGACACTCTATCTTCACTTTGCAACATCAGTCATTCATGAAATTACGACAGCCTTGGGAATCTGTTGCTTCAGGATAACTAGGAAAGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko00565 ko01100 ko01110 map00440 map00564 map00565 map01100 map01110
Pfam Domains
Protein Families
CDP-OH_P_transf

Protein Analysis

389

Amino Acids

43.27

Weight (kDa)

7.61

Isoelectric Point (pI)

30.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDP-OH_P_transf PF01066 45 - 150 2.5e-09 CDP-alcohol phosphatidyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 726
Acc65I GGTACC 1 cut(s) 891
AccB1I GGYRCC 1 cut(s) 891
AciI CCGC 1 cut(s) 137
AclWI GGATC 3 cut(s) 69, 619, 632
AcoI YGGCCR 1 cut(s) 651
AcsI RAATTY 2 cut(s) 316, 601
AcuI CTGAAG 1 cut(s) 1129
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 1 cut(s) 893
AfiI CCNNNNNNNGG 2 cut(s) 513, 524
AgsI TTSAA 5 cut(s) 91, 380, 511, 709, 946
AjnI CCWGG 1 cut(s) 735
AjuI GAANNNNNNNTTGG 2 cut(s) 202, 234
AleI CACNNNNGTG 1 cut(s) 924
AluBI AGCT 6 cut(s) 563, 621, 680, 833, 1007, 1166
AluI AGCT 6 cut(s) 563, 621, 680, 833, 1007, 1166
Alw21I GWGCWC 1 cut(s) 401
Alw26I GTCTC 2 cut(s) 79, 533
AlwI GGATC 3 cut(s) 69, 619, 632
AoxI GGCC 2 cut(s) 515, 651
ApaI GGGCCC 1 cut(s) 519
ApeKI GCWGC 2 cut(s) 187, 750
ApoI RAATTY 2 cut(s) 316, 601
Asp700I GAANNNNTTC 3 cut(s) 95, 316, 422
Asp718I GGTACC 1 cut(s) 891
AspLEI GCGC 2 cut(s) 187, 376
AspS9I GGNCC 2 cut(s) 515, 516
AsuHPI GGTGA 4 cut(s) 198, 448, 475, 819
BaeGI GKGCMC 2 cut(s) 19, 519
BalI TGGCCA 1 cut(s) 653
BamHI GGATCC 1 cut(s) 624
BanI GGYRCC 1 cut(s) 891
BanII GRGCYC 2 cut(s) 519, 589
Bbv12I GWGCWC 1 cut(s) 401
BbvI GCAGC 2 cut(s) 174, 762
BccI CCATC 3 cut(s) 228, 287, 643
BceAI ACGGC 1 cut(s) 431
BciT130I CCWGG 1 cut(s) 737
BcoDI GTCTC 2 cut(s) 79, 533
BfaI CTAG 3 cut(s) 231, 1008, 1155
BisI GCNGC 3 cut(s) 137, 188, 751
BlpI GCTNAGC 1 cut(s) 588
BlsI GCNGC 3 cut(s) 138, 189, 752
Bme1390I CCNGG 1 cut(s) 737
BmgT120I GGNCC 2 cut(s) 515, 516
BmiI GGNNCC 3 cut(s) 517, 626, 893
BmrFI CCNGG 1 cut(s) 737
BmrI ACTGGG 2 cut(s) 341, 885
BmsI GCATC 5 cut(s) 123, 274, 349, 762, 846
BmuI ACTGGG 2 cut(s) 341, 885
Bpu1102I GCTNAGC 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 307
BsaI GGTCTC 2 cut(s) 79, 533
BsaJI CCNNGG 4 cut(s) 69, 349, 1054, 1128
Bsc4I CCNNNNNNNGG 2 cut(s) 513, 524
Bse1I ACTGG 4 cut(s) 336, 771, 880, 955
Bse3DI GCAATG 2 cut(s) 411, 987
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 4 cut(s) 69, 349, 1054, 1128
BseGI GGATG 2 cut(s) 138, 359
BseLI CCNNNNNNNGG 2 cut(s) 513, 524
BseMI GCAATG 2 cut(s) 411, 987
BseMII CTCAG 3 cut(s) 567, 602, 608
BseNI ACTGG 4 cut(s) 336, 771, 880, 955
BseRI GAGGAG 1 cut(s) 1043
BseSI GKGCMC 2 cut(s) 19, 519
BseXI GCAGC 2 cut(s) 174, 762
BshFI GGCC 2 cut(s) 517, 653
BshNI GGYRCC 1 cut(s) 891
BsiHKAI GWGCWC 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 513, 524
BsmAI GTCTC 2 cut(s) 79, 533
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 2 cut(s) 517, 653
Bso31I GGTCTC 2 cut(s) 79, 533
Bsp120I GGGCCC 1 cut(s) 515
Bsp1286I GDGCHC 4 cut(s) 19, 401, 519, 589
Bsp143I GATC 2 cut(s) 61, 624
Bsp1720I GCTNAGC 1 cut(s) 588
Bsp19I CCATGG 1 cut(s) 349
BspACI CCGC 1 cut(s) 137
BspANI GGCC 2 cut(s) 517, 653
BspCNI CTCAG 3 cut(s) 568, 601, 609
BspHI TCATGA 2 cut(s) 840, 1111
BspLI GGNNCC 3 cut(s) 517, 626, 893
BspPI GGATC 3 cut(s) 69, 619, 632
BspT107I GGYRCC 1 cut(s) 891
BspTNI GGTCTC 2 cut(s) 79, 533
BsrDI GCAATG 2 cut(s) 411, 987
BsrI ACTGG 4 cut(s) 336, 771, 880, 955
BssECI CCNNGG 4 cut(s) 69, 349, 1054, 1128
BssMI GATC 2 cut(s) 61, 624
BssT1I CCWWGG 3 cut(s) 69, 349, 1128
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 6 cut(s) 554, 700, 1022, 1043, 1064, 1075
BstC8I GCNNGC 5 cut(s) 299, 303, 755, 835, 882
BstDEI CTNAG 4 cut(s) 576, 588, 617, 635
BstDSI CCRYGG 1 cut(s) 349
BstF5I GGATG 2 cut(s) 138, 359
BstHHI GCGC 2 cut(s) 187, 376
BstKTI GATC 2 cut(s) 64, 627
BstMAI GTCTC 2 cut(s) 79, 533
BstMBI GATC 2 cut(s) 61, 624
BstMWI GCNNNNNNNGC 2 cut(s) 380, 1004
BstNI CCWGG 1 cut(s) 737
BstNSI RCATGY 3 cut(s) 372, 757, 964
BstSCI CCNGG 1 cut(s) 735
BstSLI GKGCMC 2 cut(s) 19, 519
BstV1I GCAGC 2 cut(s) 174, 762
BstX2I RGATCY 1 cut(s) 624
BstXI CCANNNNNNTGG 1 cut(s) 234
BstYI RGATCY 1 cut(s) 624
BsuRI GGCC 2 cut(s) 517, 653
BtgI CCRYGG 1 cut(s) 349
BtgZI GCGATG 1 cut(s) 785
BtsCI GGATG 2 cut(s) 138, 359
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 5 cut(s) 329, 399, 550, 764, 1080
Cac8I GCNNGC 5 cut(s) 299, 303, 755, 835, 882
CciI TCATGA 2 cut(s) 840, 1111
CfoI GCGC 2 cut(s) 187, 376
Cfr13I GGNCC 2 cut(s) 515, 516
Csp6I GTAC 1 cut(s) 892
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviQI GTAC 1 cut(s) 892
DdeI CTNAG 4 cut(s) 576, 588, 617, 635
DpnI GATC 2 cut(s) 63, 626
DpnII GATC 2 cut(s) 61, 624
DraIII CACNNNGTG 1 cut(s) 23
EaeI YGGCCR 1 cut(s) 651
Eco130I CCWWGG 3 cut(s) 69, 349, 1128
Eco24I GRGCYC 2 cut(s) 519, 589
Eco31I GGTCTC 2 cut(s) 79, 533
Eco57I CTGAAG 1 cut(s) 1129
EcoRII CCWGG 1 cut(s) 735
EcoT14I CCWWGG 3 cut(s) 69, 349, 1128
EcoT38I GRGCYC 2 cut(s) 519, 589
ErhI CCWWGG 3 cut(s) 69, 349, 1128
FalI AAGNNNNNCTT 2 cut(s) 406, 438
Fnu4HI GCNGC 3 cut(s) 137, 188, 751
FokI GGATG 2 cut(s) 145, 366
FriOI GRGCYC 2 cut(s) 519, 589
Fsp4HI GCNGC 3 cut(s) 137, 188, 751
FspBI CTAG 3 cut(s) 231, 1008, 1155
GlaI GCGC 2 cut(s) 186, 375
GluI GCNGC 3 cut(s) 137, 188, 751
HaeIII GGCC 2 cut(s) 517, 653
HhaI GCGC 2 cut(s) 187, 376
Hin6I GCGC 2 cut(s) 185, 374
HinP1I GCGC 2 cut(s) 185, 374
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 1164
HinfI GANTC 5 cut(s) 91, 218, 547, 910, 1134
HpaI GTTAAC 1 cut(s) 115
HphI GGTGA 4 cut(s) 198, 448, 475, 819
Hpy166II GTNNAC 2 cut(s) 115, 329
Hpy188I TCNGA 2 cut(s) 577, 618
Hpy188III TCNNGA 5 cut(s) 88, 100, 841, 1112, 1147
Hpy8I GTNNAC 2 cut(s) 115, 329
Hpy99I CGWCG 1 cut(s) 1022
HpyAV CCTTC 2 cut(s) 106, 408
HpyCH4III ACNGT 6 cut(s) 554, 700, 1022, 1043, 1064, 1075
HpyCH4V TGCA 9 cut(s) 37, 368, 404, 464, 960, 992, 998, 1067, 1097
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 1004
HpyF3I CTNAG 4 cut(s) 576, 588, 617, 635
HspAI GCGC 2 cut(s) 185, 374
KpnI GGTACC 1 cut(s) 895
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 2 cut(s) 61, 624
LmnI GCTCC 3 cut(s) 229, 396, 472
Lsp1109I GCAGC 2 cut(s) 174, 762
LweI GCATC 5 cut(s) 123, 274, 349, 762, 846
MaeI CTAG 3 cut(s) 231, 1008, 1155
MaeIII GTNAC 5 cut(s) 548, 700, 825, 1058, 1075
MalI GATC 2 cut(s) 63, 626
MboI GATC 2 cut(s) 61, 624
MboII GAAGA 2 cut(s) 915, 1079
MflI RGATCY 1 cut(s) 624
MhlI GDGCHC 4 cut(s) 19, 401, 519, 589
MlsI TGGCCA 1 cut(s) 653
MluCI AATT 5 cut(s) 241, 316, 601, 642, 1116
MluNI TGGCCA 1 cut(s) 653
MlyI GAGTC 1 cut(s) 556
MnlI CCTC 4 cut(s) 331, 517, 837, 1064
Mox20I TGGCCA 1 cut(s) 653
MroXI GAANNNNTTC 3 cut(s) 95, 316, 422
MscI TGGCCA 1 cut(s) 653
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 4 cut(s) 232, 354, 404, 924
Msp20I TGGCCA 1 cut(s) 653
MspA1I CMGCKG 1 cut(s) 833
MspR9I CCNGG 1 cut(s) 737
Mva1269I GAATGC 1 cut(s) 34
MvaI CCWGG 1 cut(s) 737
MwoI GCNNNNNNNGC 2 cut(s) 380, 1004
NcoI CCATGG 1 cut(s) 349
NdeII GATC 2 cut(s) 61, 624
NlaIV GGNNCC 3 cut(s) 517, 626, 893
NmuCI GTSAC 3 cut(s) 548, 825, 1075
NspI RCATGY 3 cut(s) 372, 757, 964
OliI CACNNNNGTG 1 cut(s) 924
PaeI GCATGC 1 cut(s) 757
PagI TCATGA 2 cut(s) 840, 1111
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 3 cut(s) 95, 316, 422
PfeI GAWTC 4 cut(s) 91, 218, 910, 1134
PkrI GCNGC 3 cut(s) 138, 189, 752
PleI GAGTC 1 cut(s) 555
PpsI GAGTC 1 cut(s) 555
PsiI TTATAA 1 cut(s) 726
Psp6I CCWGG 1 cut(s) 735
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 3 cut(s) 517, 626, 893
PspOMI GGGCCC 1 cut(s) 515
PspPI GGNCC 2 cut(s) 515, 516
PsuI RGATCY 1 cut(s) 624
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 1 cut(s) 893
RsaNI GTAC 1 cut(s) 892
RseI CAYNNNNRTG 4 cut(s) 232, 354, 404, 924
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 3 cut(s) 137, 188, 751
Sau3AI GATC 2 cut(s) 61, 624
Sau96I GGNCC 2 cut(s) 515, 516
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 1 cut(s) 737
SduI GDGCHC 4 cut(s) 19, 401, 519, 589
SfaNI GCATC 5 cut(s) 123, 274, 349, 762, 846
SmiMI CAYNNNNRTG 4 cut(s) 232, 354, 404, 924
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
SphI GCATGC 1 cut(s) 757
Sse9I AATT 5 cut(s) 241, 316, 601, 642, 1116
SsiI CCGC 1 cut(s) 137
SspMI CTAG 3 cut(s) 231, 1008, 1155
StyD4I CCNGG 1 cut(s) 735
StyI CCWWGG 3 cut(s) 69, 349, 1128
TaaI ACNGT 6 cut(s) 554, 700, 1022, 1043, 1064, 1075
TasI AATT 5 cut(s) 241, 316, 601, 642, 1116
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 4 cut(s) 91, 218, 910, 1134
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 5 cut(s) 336, 406, 557, 771, 1080
TseFI GTSAC 3 cut(s) 548, 825, 1075
TseI GCWGC 2 cut(s) 187, 750
Tsp45I GTSAC 3 cut(s) 548, 825, 1075
TspDTI ATGAA 4 cut(s) 154, 731, 1100, 1128
TspRI CASTG 5 cut(s) 336, 406, 557, 771, 1080
XapI RAATTY 2 cut(s) 316, 601
XceI RCATGY 3 cut(s) 372, 757, 964
XmnI GAANNNNTTC 3 cut(s) 95, 316, 422
XspI CTAG 3 cut(s) 231, 1008, 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.