Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001984

Physical Location & Seq

Genomic Coordinates Forward (+)

476240 .. 480693

Gene Structure 4454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00510.17

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGGGTATATTGGGGCACATGGTGTGGCTGCTTTGCATAAATACAAGTACAGTGGCGTGGATCACTCTTACACTGCCAAATATGTCTTGCAACCCTTTTGGAGTAGCTTCGTTAAAATCTTTCCCCTTTGGATGCCGCCCAACATGATAACTCTAATAGGATTCATGTTCTTGCTCACATCCGCTCTGCTTGGCTATATATATTCACCACGACTGGATTCAGCTCCTCCTAGATGGGTTAATTTCGCTCATGGATTGCTACTTTTCTTATACCAGACCTTTGATGCCGTTGATGGGAAACAAGCAAGACGGACAAATTCCTCGAGTCCACTGGGGGAACTTTTCGACCATGGTTGTGATGCCCTTGCGTGTGCGTTCGAAGCATTGGCCTTTGGAAGTACTGCGATGTTTGGAAGATCTACTTTCTGGTTCTGGGTGATTTCAGCTGTTCCATTTTACTTTGCTACTTGGGAGTTTTACTTTACCAATACCCTAATCCTTCCTGCTGTTAATGGGCCCACGGAGGGTCTAATGCTGATATATTTGGCCCATTTTTTCACAGCTATCGTTGGTTCTGAGTGGTGGGCTCTACAATTTGGAAAGTCTTTGCCTTTTCTGAGTTGGGTCCCCATTCTTAGTGAAATCCAAACAAACAAAGCTGTGTTGTATCTAATGATAGCTTTTGCTGTCATCCCAACGCTCACATTCAATGTGTCCAATGTTCATAAGATTGTTCAAGCAAGGAAAGCAAGTATGCTTTTGGCACTGGCAATGATTTACCCTTTTGTAGTCCTTTTGGTTGGAGTTTTGGCATGGGGTTACTTGTCACCAGCTGACATTATGGGGAACTATCCACATTTAGTCGTTGTGGGAAGTGGACTTGCTTTTGGGTACCTTGTGGTAACATATCCATTGATTCTTGCGCACTTGTGTGATGAGCCCAAGGGTTTGAAAACTGGAATGTGCATGTCATTGTTGTATCTCCCATTTGCCATTGCAAATGCACTCACAGCTAAACTGAACGATGGGGTTCCTTTGGTTGATGAGAGCTTGGTTCTTCTTGGTTACTGTGCATTTACAGCGACACTCTATCTTCACTTTGCAACATCAGTCATTCACGAGATCACAACAGCCTTGGGAATCTATTGCTTTAGGGTAACCAGGAAGGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko00565 ko01100 ko01110 map00440 map00564 map00565 map01100 map01110

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

392

Amino Acids

43.39

Weight (kDa)

7.66

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13560 AT1G13560 AT1G13560 AT3G25585 AT3G25585 AT3G25585 AT3G25585 AT3G25585 AT3G25585
fragaria_vesca	FvH4_4g28600 FvH4_4g28600
malus_domestica	MD12G1007000.v1.1 MD16G1057500.v1.1
prunus_persica	Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1
pyrus_communis	pycom03g00010 pycom12g00510 pycom16g05030
rosa_chinensis	RchiOBHm_Chr4g0436691
rosa_laevigata	RLG00000006503
rosa_multiflora	Rmu_sc0016627.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377770
rosa_rugosa	Rorug04G0295300 Rorug04G0295400
rosa_samantha	Rh4AG349800 Rh4BG358500 Rh4CG372900 Rh4DG352700
rosa_wichuraiana	Rw4G030600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	924
Acc65I	GGTACC	1 cut(s)	891
AccB1I	GGYRCC	1 cut(s)	891
AccBSI	CCGCTC	1 cut(s)	185
AciI	CCGC	2 cut(s)	137, 183
AclWI	GGATC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	316
AdeI	CACNNNGTG	1 cut(s)	23
AfaI	GTAC	3 cut(s)	50, 400, 893
AfiI	CCNNNNNNNGG	2 cut(s)	294, 524
AgsI	TTSAA	3 cut(s)	709, 737, 952
AjnI	CCWGG	1 cut(s)	1160
AleI	CACNNNNGTG	1 cut(s)	930
AlwI	GGATC	1 cut(s)	69
Ama87I	CYCGRG	1 cut(s)	322
AoxI	GGCC	3 cut(s)	387, 515, 546
ApaI	GGGCCC	1 cut(s)	519
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	316
Asp718I	GGTACC	1 cut(s)	891
AspLEI	GCGC	1 cut(s)	925
AspS9I	GGNCC	4 cut(s)	515, 516, 547, 625
AsuHPI	GGTGA	3 cut(s)	198, 448, 819
AsuII	TTCGAA	1 cut(s)	378
AvaI	CYCGRG	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	625
BaeGI	GKGCMC	2 cut(s)	19, 519
BanI	GGYRCC	1 cut(s)	891
BanII	GRGCYC	3 cut(s)	519, 589, 942
BauI	CACGAG	1 cut(s)	1118
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	3 cut(s)	228, 287, 1019
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	1162
BfaI	CTAG	1 cut(s)	231
BglII	AGATCT	1 cut(s)	416
BisI	GCNGC	2 cut(s)	30, 137
BlsI	GCNGC	2 cut(s)	31, 138
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	1162
Bme18I	GGWCC	1 cut(s)	625
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	4 cut(s)	515, 516, 547, 625
BmiI	GGNNCC	5 cut(s)	517, 626, 627, 893, 1032
BmrFI	CCNGG	1 cut(s)	1162
BmrI	ACTGGG	1 cut(s)	341
BmsI	GCATC	3 cut(s)	123, 274, 349
BmuI	ACTGGG	1 cut(s)	341
Bpu14I	TTCGAA	1 cut(s)	378
BsaJI	CCNNGG	4 cut(s)	349, 519, 942, 1134
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 524
Bse1I	ACTGG	4 cut(s)	219, 336, 771, 961
Bse3DI	GCAATG	2 cut(s)	777, 993
BseBI	CCWGG	1 cut(s)	1162
BseDI	CCNNGG	4 cut(s)	349, 519, 942, 1134
BseGI	GGATG	3 cut(s)	138, 179, 690
BseLI	CCNNNNNNNGG	2 cut(s)	294, 524
BseMI	GCAATG	2 cut(s)	777, 993
BseMII	CTCAG	2 cut(s)	567, 608
BseNI	ACTGG	4 cut(s)	219, 336, 771, 961
BseRI	GAGGAG	1 cut(s)	216
BseSI	GKGCMC	2 cut(s)	19, 519
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	3 cut(s)	389, 517, 548
BshNI	GGYRCC	1 cut(s)	891
BsiHKCI	CYCGRG	1 cut(s)	322
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	2 cut(s)	294, 524
BsmFI	GGGAC	1 cut(s)	611
BsnI	GGCC	3 cut(s)	389, 517, 548
BsoBI	CYCGRG	1 cut(s)	322
Bsp119I	TTCGAA	1 cut(s)	378
Bsp120I	GGGCCC	1 cut(s)	515
Bsp1286I	GDGCHC	4 cut(s)	19, 519, 589, 942
Bsp143I	GATC	3 cut(s)	61, 416, 1122
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	2 cut(s)	137, 183
BspANI	GGCC	3 cut(s)	389, 517, 548
BspCNI	CTCAG	2 cut(s)	568, 609
BspLI	GGNNCC	5 cut(s)	517, 626, 627, 893, 1032
BspPI	GGATC	1 cut(s)	69
BspT104I	TTCGAA	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	891
BsrBI	CCGCTC	1 cut(s)	185
BsrDI	GCAATG	2 cut(s)	777, 993
BsrI	ACTGG	4 cut(s)	219, 336, 771, 961
BssECI	CCNNGG	4 cut(s)	349, 519, 942, 1134
BssMI	GATC	3 cut(s)	61, 416, 1122
BssSI	CACGAG	1 cut(s)	1118
BssT1I	CCWWGG	3 cut(s)	349, 942, 1134
Bst2BI	CACGAG	1 cut(s)	1118
Bst2UI	CCWGG	1 cut(s)	1162
Bst4CI	ACNGT	2 cut(s)	53, 1070
BstBI	TTCGAA	1 cut(s)	378
BstDEI	CTNAG	3 cut(s)	576, 617, 635
BstDSI	CCRYGG	2 cut(s)	349, 519
BstEII	GGTNACC	1 cut(s)	1156
BstF5I	GGATG	3 cut(s)	138, 179, 690
BstHHI	GCGC	1 cut(s)	925
BstKTI	GATC	3 cut(s)	64, 419, 1125
BstMBI	GATC	3 cut(s)	61, 416, 1122
BstMWI	GCNNNNNNNGC	4 cut(s)	380, 746, 1010, 1079
BstNI	CCWGG	1 cut(s)	1162
BstNSI	RCATGY	1 cut(s)	970
BstPI	GGTNACC	1 cut(s)	1156
BstSCI	CCNGG	1 cut(s)	1160
BstSLI	GKGCMC	2 cut(s)	19, 519
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BsuRI	GGCC	3 cut(s)	389, 517, 548
BtgI	CCRYGG	2 cut(s)	349, 519
BtgZI	GCGATG	1 cut(s)	419
BtsCI	GGATG	3 cut(s)	138, 179, 690
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	4 cut(s)	58, 72, 329, 764
CfoI	GCGC	1 cut(s)	925
Cfr13I	GGNCC	4 cut(s)	515, 516, 547, 625
Csp6I	GTAC	3 cut(s)	49, 399, 892
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviAII	CATG	7 cut(s)	20, 145, 166, 251, 350, 813, 967
CviQI	GTAC	3 cut(s)	49, 399, 892
DdeI	CTNAG	3 cut(s)	576, 617, 635
DpnI	GATC	3 cut(s)	63, 418, 1124
DpnII	GATC	3 cut(s)	61, 416, 1122
DraIII	CACNNNGTG	1 cut(s)	23
Eco130I	CCWWGG	3 cut(s)	349, 942, 1134
Eco24I	GRGCYC	3 cut(s)	519, 589, 942
Eco47I	GGWCC	1 cut(s)	625
Eco88I	CYCGRG	1 cut(s)	322
Eco91I	GGTNACC	1 cut(s)	1156
EcoO109I	RGGNCCY	1 cut(s)	625
EcoO65I	GGTNACC	1 cut(s)	1156
EcoRII	CCWGG	1 cut(s)	1160
EcoT14I	CCWWGG	3 cut(s)	349, 942, 1134
EcoT38I	GRGCYC	3 cut(s)	519, 589, 942
ErhI	CCWWGG	3 cut(s)	349, 942, 1134
FaeI	CATG	7 cut(s)	23, 148, 169, 254, 353, 816, 970
FalI	AAGNNNNNCTT	2 cut(s)	406, 438
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	7 cut(s)	19, 144, 165, 250, 349, 812, 966
Fnu4HI	GCNGC	2 cut(s)	30, 137
FokI	GGATG	3 cut(s)	145, 166, 677
FriOI	GRGCYC	3 cut(s)	519, 589, 942
Fsp4HI	GCNGC	2 cut(s)	30, 137
FspBI	CTAG	1 cut(s)	231
FspI	TGCGCA	1 cut(s)	924
GlaI	GCGC	1 cut(s)	924
GluI	GCNGC	2 cut(s)	30, 137
HaeIII	GGCC	3 cut(s)	389, 517, 548
HhaI	GCGC	1 cut(s)	925
Hin1II	CATG	7 cut(s)	23, 148, 169, 254, 353, 816, 970
Hin6I	GCGC	1 cut(s)	923
HinP1I	GCGC	1 cut(s)	923
HindIII	AAGCTT	1 cut(s)	1170
HinfI	GANTC	5 cut(s)	162, 218, 325, 916, 1140
HphI	GGTGA	3 cut(s)	198, 448, 819
Hpy166II	GTNNAC	2 cut(s)	329, 878
Hpy188I	TCNGA	2 cut(s)	577, 618
Hpy188III	TCNNGA	1 cut(s)	1118
Hpy8I	GTNNAC	2 cut(s)	329, 878
HpyAV	CCTTC	2 cut(s)	509, 1159
HpyCH4III	ACNGT	2 cut(s)	53, 1070
HpyCH4V	TGCA	7 cut(s)	37, 91, 966, 998, 1004, 1073, 1103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	380, 746, 1010, 1079
HpyF3I	CTNAG	3 cut(s)	576, 617, 635
Hsp92II	CATG	7 cut(s)	23, 148, 169, 254, 353, 816, 970
HspAI	GCGC	1 cut(s)	923
KflI	GGGWCCC	1 cut(s)	625
KpnI	GGTACC	1 cut(s)	895
Kzo9I	GATC	3 cut(s)	61, 416, 1122
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	3 cut(s)	123, 274, 349
MaeI	CTAG	1 cut(s)	231
MaeIII	GTNAC	5 cut(s)	818, 825, 901, 1064, 1156
MalI	GATC	3 cut(s)	63, 418, 1124
MbiI	CCGCTC	1 cut(s)	185
MboI	GATC	3 cut(s)	61, 416, 1122
MboII	GAAGA	3 cut(s)	426, 1049, 1085
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	4 cut(s)	19, 519, 589, 942
MluCI	AATT	3 cut(s)	241, 316, 593
MlyI	GAGTC	1 cut(s)	334
MmeI	TCCRAC	1 cut(s)	781
MnlI	CCTC	3 cut(s)	237, 331, 517
MseI	TTAA	3 cut(s)	114, 240, 510
MslI	CAYNNNNRTG	2 cut(s)	354, 930
MspA1I	CMGCKG	2 cut(s)	446, 833
MspR9I	CCNGG	1 cut(s)	1162
MvaI	CCWGG	1 cut(s)	1162
MwoI	GCNNNNNNNGC	4 cut(s)	380, 746, 1010, 1079
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	3 cut(s)	61, 416, 1122
NlaIII	CATG	7 cut(s)	23, 148, 169, 254, 353, 816, 970
NlaIV	GGNNCC	5 cut(s)	517, 626, 627, 893, 1032
NmuCI	GTSAC	1 cut(s)	825
NsbI	TGCGCA	1 cut(s)	924
NspI	RCATGY	1 cut(s)	970
NspV	TTCGAA	1 cut(s)	378
OliI	CACNNNNGTG	1 cut(s)	930
PaeR7I	CTCGAG	1 cut(s)	322
PfeI	GAWTC	4 cut(s)	162, 218, 916, 1140
PkrI	GCNGC	2 cut(s)	31, 138
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
PpuMI	RGGWCCY	1 cut(s)	625
Psp5II	RGGWCCY	1 cut(s)	625
Psp6I	CCWGG	1 cut(s)	1160
PspEI	GGTNACC	1 cut(s)	1156
PspGI	CCWGG	1 cut(s)	1160
PspN4I	GGNNCC	5 cut(s)	517, 626, 627, 893, 1032
PspOMI	GGGCCC	1 cut(s)	515
PspPI	GGNCC	4 cut(s)	515, 516, 547, 625
PspPPI	RGGWCCY	1 cut(s)	625
PspXI	VCTCGAGB	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	416
PvuII	CAGCTG	2 cut(s)	446, 833
RsaI	GTAC	3 cut(s)	50, 400, 893
RsaNI	GTAC	3 cut(s)	49, 399, 892
RseI	CAYNNNNRTG	2 cut(s)	354, 930
SaqAI	TTAA	3 cut(s)	114, 240, 510
SatI	GCNGC	2 cut(s)	30, 137
Sau3AI	GATC	3 cut(s)	61, 416, 1122
Sau96I	GGNCC	4 cut(s)	515, 516, 547, 625
ScaI	AGTACT	1 cut(s)	400
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	1 cut(s)	1162
SduI	GDGCHC	4 cut(s)	19, 519, 589, 942
SfaNI	GCATC	3 cut(s)	123, 274, 349
Sfr274I	CTCGAG	1 cut(s)	322
SfuI	TTCGAA	1 cut(s)	378
SinI	GGWCC	1 cut(s)	625
SlaI	CTCGAG	1 cut(s)	322
SmiMI	CAYNNNNRTG	2 cut(s)	354, 930
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	3 cut(s)	241, 316, 593
SsiI	CCGC	2 cut(s)	137, 183
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	1160
StyI	CCWWGG	3 cut(s)	349, 942, 1134
TaaI	ACNGT	2 cut(s)	53, 1070
TaqI	TCGA	3 cut(s)	323, 345, 378
TasI	AATT	3 cut(s)	241, 316, 593
TatI	WGTACW	2 cut(s)	48, 398
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	4 cut(s)	162, 218, 916, 1140
Tru1I	TTAA	3 cut(s)	114, 240, 510
Tru9I	TTAA	3 cut(s)	114, 240, 510
TscAI	CASTG	4 cut(s)	58, 79, 336, 771
TseFI	GTSAC	1 cut(s)	825
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	825
TspDTI	ATGAA	2 cut(s)	154, 713
TspGWI	ACGGA	2 cut(s)	325, 536
TspRI	CASTG	4 cut(s)	58, 79, 336, 771
VpaK11BI	GGWCC	1 cut(s)	625
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	970
XhoI	CTCGAG	1 cut(s)	322
XspI	CTAG	1 cut(s)	231
ZrmI	AGTACT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.