Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001984

Physical Location & Seq

Genomic Coordinates Forward (+)

5978 .. 10655

Gene Structure 4678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00010.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGTTGATCCAATTATCTTGGGGGGCAAGTGTACAAGCATGTATGATTGTATTCAGTGATGGCACGTTGGTTGTACTGAGGCTTATTTGCATTTTGTTTCGAAGCGAAAAATCGAAGCTTGATTTGGAAGAGATGGGGTATATTGGGGCACATGGTGTGGCTGCTTTGCTTAAATACAAGTACAGTGGCGTGGATCACTCTTACACTGCCAAATATATCTTGCAACCCTTTTGGAGTAGCTTCGTTAAAATCTTTCCCCTTTGGATGCCGCCCAACATGATAACTCTAACAGGATTCATGTTCTTGCTCACATCCGCTCTGCTTGGCTATATATATTCACCACGACTGGATTCAGCTCCTCCTAGATGGGTTAATTTCGCTCATGGATTGCTACTTTTCTTATACCAGACGTTTGATGCCGTTGATGGGAAACAAGCAAGACGGACAAATTCCTCAAGTCCACTGGGGGAACTTTTTGACCATGGTTGTGATGCCCTTGCCTGCGCGTTTGAAGCATTGGCCTTTGGAAGTACCGCGATATGTGGAAGATCTACTTTCTGGTTCTGGGTGATTTCAGCTGTTCCATTTTACTTTGCTACTTGGGAGTCTTACTTTACTAATACCCTAATCCTTCCTGCTGTTAATGGGCCCACGGAAGGTCTAATGCTTATATATTTGGCCCATTTTTTCACAGCTATCGTTGGTTCTGAGTGGTGGGCTCTACAATTTGGAAAGTCTTTGCCTTTTCTGAGTTGGGTCCCCATTCTTAGTGAAATCCCAACATACAAAGCTGTGTTGTATCTAATGATAGCTTTTGCTGTCATCCCAACGCTCACATTCAATGTATCCAATGTTCATAAGGTTGTTCAAGCAAGGAAAGCAAGTATGCTATTGGCACTGGCAATGATTTACCCTTTTGTAGTCCTTTTGGTAGGAGTTTTGGCATGGGGTTACTTGTCACCAGCTGACATTATGGGGAACTATCCACATTTAATCGTTTTGGGAAGTGGGCTTGCTTTTGGGTACCTTGTGGTAAGATATCCATTGATTCTTGCGCACTTGTGTGATGAGCCAAAGGGTTTGAAAACTGGAATGTGCATGTCATTTTTGTATCTTCCATTTGCCATTGCAAATGCACTCACAGCTAAACTGAACGATGGAGTTCCTTTGGTTGATGAGAGCTTGGTTCTTCTTGGTTACTGTGCATTTACAGGGACACTCTATCTTCACTTTGCAACGTCAGTCATTCACGAGATCGCAACAGCCTTGGGAATCTATTGCTTTAGGATAACTAGGAAGGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko00565 ko01100 ko01110 map00440 map00564 map00565 map01100 map01110

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

436

Amino Acids

48.28

Weight (kDa)

7.58

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13560 AT1G13560 AT1G13560 AT3G25585 AT3G25585 AT3G25585 AT3G25585 AT3G25585 AT3G25585
fragaria_vesca	FvH4_4g28600 FvH4_4g28600
malus_domestica	MD12G1007000.v1.1 MD16G1057500.v1.1
prunus_persica	Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1
pyrus_communis	pycom03g00010 pycom12g00510 pycom16g05030
rosa_chinensis	RchiOBHm_Chr4g0436691
rosa_laevigata	RLG00000006503
rosa_multiflora	Rmu_sc0016627.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377770
rosa_rugosa	Rorug04G0295300 Rorug04G0295400
rosa_samantha	Rh4AG349800 Rh4BG358500 Rh4CG372900 Rh4DG352700
rosa_wichuraiana	Rw4G030600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1056
Acc65I	GGTACC	1 cut(s)	1023
AccB1I	GGYRCC	1 cut(s)	1023
AccBSI	CCGCTC	1 cut(s)	317
AccII	CGCG	2 cut(s)	506, 536
AciI	CCGC	3 cut(s)	269, 315, 534
AclWI	GGATC	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	448
AdeI	CACNNNGTG	1 cut(s)	155
AfaI	GTAC	5 cut(s)	33, 75, 182, 532, 1025
AfiI	CCNNNNNNNGG	2 cut(s)	426, 656
AgsI	TTSAA	4 cut(s)	512, 841, 869, 1084
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AleI	CACNNNNGTG	1 cut(s)	1062
AlwI	GGATC	1 cut(s)	201
AoxI	GGCC	3 cut(s)	519, 647, 678
ApaI	GGGCCC	1 cut(s)	651
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	448
Asp718I	GGTACC	1 cut(s)	1023
AspLEI	GCGC	2 cut(s)	506, 1057
AspS9I	GGNCC	4 cut(s)	647, 648, 679, 757
AsuHPI	GGTGA	3 cut(s)	330, 580, 951
AsuII	TTCGAA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	757
BaeGI	GKGCMC	2 cut(s)	151, 651
BanI	GGYRCC	1 cut(s)	1023
BanII	GRGCYC	2 cut(s)	651, 721
BauI	CACGAG	1 cut(s)	1250
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	5 cut(s)	53, 127, 360, 419, 1151
BceAI	ACGGC	1 cut(s)	404
BciVI	GTATCC	1 cut(s)	856
BfaI	CTAG	2 cut(s)	363, 1293
BfuI	GTATCC	1 cut(s)	856
BglII	AGATCT	1 cut(s)	548
BisI	GCNGC	2 cut(s)	162, 269
BlsI	GCNGC	2 cut(s)	163, 270
Bme18I	GGWCC	1 cut(s)	757
BmgT120I	GGNCC	4 cut(s)	647, 648, 679, 757
BmiI	GGNNCC	4 cut(s)	649, 758, 759, 1025
BmrI	ACTGGG	1 cut(s)	473
BmsI	GCATC	3 cut(s)	255, 406, 481
BmuI	ACTGGG	1 cut(s)	473
Bpu14I	TTCGAA	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	439
BsaJI	CCNNGG	3 cut(s)	481, 651, 1266
Bsc4I	CCNNNNNNNGG	2 cut(s)	426, 656
Bse1I	ACTGG	4 cut(s)	351, 468, 903, 1093
Bse3DI	GCAATG	2 cut(s)	909, 1125
BseDI	CCNNGG	3 cut(s)	481, 651, 1266
BseGI	GGATG	3 cut(s)	270, 311, 822
BseLI	CCNNNNNNNGG	2 cut(s)	426, 656
BseMI	GCAATG	2 cut(s)	909, 1125
BseMII	CTCAG	3 cut(s)	68, 699, 740
BseNI	ACTGG	4 cut(s)	351, 468, 903, 1093
BseRI	GAGGAG	1 cut(s)	348
BseSI	GKGCMC	2 cut(s)	151, 651
BseXI	GCAGC	1 cut(s)	148
Bsh1236I	CGCG	2 cut(s)	506, 536
BshFI	GGCC	3 cut(s)	521, 649, 680
BshNI	GGYRCC	1 cut(s)	1023
BslFI	GGGAC	2 cut(s)	743, 1228
BslI	CCNNNNNNNGG	2 cut(s)	426, 656
BsmFI	GGGAC	2 cut(s)	743, 1228
BsnI	GGCC	3 cut(s)	521, 649, 680
Bsp119I	TTCGAA	1 cut(s)	100
Bsp120I	GGGCCC	1 cut(s)	647
Bsp1286I	GDGCHC	3 cut(s)	151, 651, 721
Bsp1407I	TGTACA	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	6, 193, 548, 1254
Bsp19I	CCATGG	1 cut(s)	481
BspACI	CCGC	3 cut(s)	269, 315, 534
BspANI	GGCC	3 cut(s)	521, 649, 680
BspCNI	CTCAG	3 cut(s)	69, 700, 741
BspFNI	CGCG	2 cut(s)	506, 536
BspLI	GGNNCC	4 cut(s)	649, 758, 759, 1025
BspPI	GGATC	1 cut(s)	201
BspT104I	TTCGAA	1 cut(s)	100
BspT107I	GGYRCC	1 cut(s)	1023
BsrBI	CCGCTC	1 cut(s)	317
BsrDI	GCAATG	2 cut(s)	909, 1125
BsrGI	TGTACA	1 cut(s)	31
BsrI	ACTGG	4 cut(s)	351, 468, 903, 1093
BssECI	CCNNGG	3 cut(s)	481, 651, 1266
BssMI	GATC	4 cut(s)	6, 193, 548, 1254
BssSI	CACGAG	1 cut(s)	1250
BssT1I	CCWWGG	2 cut(s)	481, 1266
Bst2BI	CACGAG	1 cut(s)	1250
Bst4CI	ACNGT	2 cut(s)	185, 1202
Bst6I	CTCTTC	1 cut(s)	123
BstAUI	TGTACA	1 cut(s)	31
BstBI	TTCGAA	1 cut(s)	100
BstC8I	GCNNGC	2 cut(s)	502, 1014
BstDEI	CTNAG	4 cut(s)	77, 708, 749, 767
BstDSI	CCRYGG	2 cut(s)	481, 651
BstF5I	GGATG	3 cut(s)	270, 311, 822
BstFNI	CGCG	2 cut(s)	506, 536
BstHHI	GCGC	2 cut(s)	506, 1057
BstKTI	GATC	4 cut(s)	9, 196, 551, 1257
BstMBI	GATC	4 cut(s)	6, 193, 548, 1254
BstMWI	GCNNNNNNNGC	3 cut(s)	512, 878, 1142
BstNSI	RCATGY	2 cut(s)	42, 1102
BstSLI	GKGCMC	2 cut(s)	151, 651
BstUI	CGCG	2 cut(s)	506, 536
BstV1I	GCAGC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
BsuI	GTATCC	1 cut(s)	856
BsuRI	GGCC	3 cut(s)	521, 649, 680
BtgI	CCRYGG	2 cut(s)	481, 651
BtsCI	GGATG	3 cut(s)	270, 311, 822
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	5 cut(s)	61, 190, 204, 461, 896
Cac8I	GCNNGC	2 cut(s)	502, 1014
CfoI	GCGC	2 cut(s)	506, 1057
Cfr13I	GGNCC	4 cut(s)	647, 648, 679, 757
Csp6I	GTAC	5 cut(s)	32, 74, 181, 531, 1024
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviAII	CATG	8 cut(s)	39, 152, 277, 298, 383, 482, 945, 1099
CviQI	GTAC	5 cut(s)	32, 74, 181, 531, 1024
DdeI	CTNAG	4 cut(s)	77, 708, 749, 767
DpnI	GATC	4 cut(s)	8, 195, 550, 1256
DpnII	GATC	4 cut(s)	6, 193, 548, 1254
DraIII	CACNNNGTG	1 cut(s)	155
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	2 cut(s)	481, 1266
Eco24I	GRGCYC	2 cut(s)	651, 721
Eco32I	GATATC	1 cut(s)	1040
Eco47I	GGWCC	1 cut(s)	757
EcoO109I	RGGNCCY	1 cut(s)	757
EcoRV	GATATC	1 cut(s)	1040
EcoT14I	CCWWGG	2 cut(s)	481, 1266
EcoT38I	GRGCYC	2 cut(s)	651, 721
ErhI	CCWWGG	2 cut(s)	481, 1266
FaeI	CATG	8 cut(s)	42, 155, 280, 301, 386, 485, 948, 1102
FalI	AAGNNNNNCTT	2 cut(s)	538, 570
FaqI	GGGAC	2 cut(s)	743, 1228
FatI	CATG	8 cut(s)	38, 151, 276, 297, 382, 481, 944, 1098
Fnu4HI	GCNGC	2 cut(s)	162, 269
FokI	GGATG	3 cut(s)	277, 298, 809
FriOI	GRGCYC	2 cut(s)	651, 721
Fsp4HI	GCNGC	2 cut(s)	162, 269
FspBI	CTAG	2 cut(s)	363, 1293
FspI	TGCGCA	1 cut(s)	1056
GlaI	GCGC	2 cut(s)	505, 1056
GluI	GCNGC	2 cut(s)	162, 269
HaeIII	GGCC	3 cut(s)	521, 649, 680
HhaI	GCGC	2 cut(s)	506, 1057
Hin1II	CATG	8 cut(s)	42, 155, 280, 301, 386, 485, 948, 1102
Hin6I	GCGC	2 cut(s)	504, 1055
HinP1I	GCGC	2 cut(s)	504, 1055
HindIII	AAGCTT	2 cut(s)	116, 1302
HinfI	GANTC	5 cut(s)	294, 350, 605, 1048, 1272
HphI	GGTGA	3 cut(s)	330, 580, 951
Hpy166II	GTNNAC	2 cut(s)	32, 461
Hpy188I	TCNGA	2 cut(s)	709, 750
Hpy188III	TCNNGA	1 cut(s)	1250
Hpy8I	GTNNAC	2 cut(s)	32, 461
HpyAV	CCTTC	3 cut(s)	641, 650, 1291
HpyCH4III	ACNGT	2 cut(s)	185, 1202
HpyCH4IV	ACGT	3 cut(s)	65, 410, 1238
HpyCH4V	TGCA	7 cut(s)	90, 223, 1098, 1130, 1136, 1205, 1235
HpyF10VI	GCNNNNNNNGC	3 cut(s)	512, 878, 1142
HpyF3I	CTNAG	4 cut(s)	77, 708, 749, 767
HpySE526I	ACGT	3 cut(s)	65, 410, 1238
Hsp92II	CATG	8 cut(s)	42, 155, 280, 301, 386, 485, 948, 1102
HspAI	GCGC	2 cut(s)	504, 1055
KflI	GGGWCCC	1 cut(s)	757
KpnI	GGTACC	1 cut(s)	1027
Kzo9I	GATC	4 cut(s)	6, 193, 548, 1254
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	3 cut(s)	255, 406, 481
MaeI	CTAG	2 cut(s)	363, 1293
MaeII	ACGT	3 cut(s)	65, 410, 1238
MaeIII	GTNAC	3 cut(s)	950, 957, 1196
MalI	GATC	4 cut(s)	8, 195, 550, 1256
MbiI	CCGCTC	1 cut(s)	317
MboI	GATC	4 cut(s)	6, 193, 548, 1254
MboII	GAAGA	5 cut(s)	140, 558, 1106, 1181, 1217
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	3 cut(s)	151, 651, 721
MluCI	AATT	4 cut(s)	11, 373, 448, 725
MlyI	GAGTC	1 cut(s)	614
MnlI	CCTC	3 cut(s)	72, 369, 463
MseI	TTAA	5 cut(s)	171, 246, 372, 642, 992
MslI	CAYNNNNRTG	2 cut(s)	486, 1062
MspA1I	CMGCKG	2 cut(s)	578, 965
MvnI	CGCG	2 cut(s)	506, 536
MwoI	GCNNNNNNNGC	3 cut(s)	512, 878, 1142
NcoI	CCATGG	1 cut(s)	481
NdeII	GATC	4 cut(s)	6, 193, 548, 1254
NlaIII	CATG	8 cut(s)	42, 155, 280, 301, 386, 485, 948, 1102
NlaIV	GGNNCC	4 cut(s)	649, 758, 759, 1025
NmuCI	GTSAC	1 cut(s)	957
NsbI	TGCGCA	1 cut(s)	1056
NspI	RCATGY	2 cut(s)	42, 1102
NspV	TTCGAA	1 cut(s)	100
OliI	CACNNNNGTG	1 cut(s)	1062
PfeI	GAWTC	4 cut(s)	294, 350, 1048, 1272
PkrI	GCNGC	2 cut(s)	163, 270
PleI	GAGTC	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	613
PpuMI	RGGWCCY	1 cut(s)	757
Psp5II	RGGWCCY	1 cut(s)	757
PspN4I	GGNNCC	4 cut(s)	649, 758, 759, 1025
PspOMI	GGGCCC	1 cut(s)	647
PspPI	GGNCC	4 cut(s)	647, 648, 679, 757
PspPPI	RGGWCCY	1 cut(s)	757
PsrI	GAACNNNNNNTAC	2 cut(s)	837, 869
PsuI	RGATCY	1 cut(s)	548
PvuII	CAGCTG	2 cut(s)	578, 965
RsaI	GTAC	5 cut(s)	33, 75, 182, 532, 1025
RsaNI	GTAC	5 cut(s)	32, 74, 181, 531, 1024
RseI	CAYNNNNRTG	2 cut(s)	486, 1062
SaqAI	TTAA	5 cut(s)	171, 246, 372, 642, 992
SatI	GCNGC	2 cut(s)	162, 269
Sau3AI	GATC	4 cut(s)	6, 193, 548, 1254
Sau96I	GGNCC	4 cut(s)	647, 648, 679, 757
SchI	GAGTC	1 cut(s)	614
SduI	GDGCHC	3 cut(s)	151, 651, 721
SfaNI	GCATC	3 cut(s)	255, 406, 481
SfuI	TTCGAA	1 cut(s)	100
SinI	GGWCC	1 cut(s)	757
SmiMI	CAYNNNNRTG	2 cut(s)	486, 1062
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	4 cut(s)	11, 373, 448, 725
SsiI	CCGC	3 cut(s)	269, 315, 534
SspMI	CTAG	2 cut(s)	363, 1293
StyI	CCWWGG	2 cut(s)	481, 1266
TaaI	ACNGT	2 cut(s)	185, 1202
TaiI	ACGT	3 cut(s)	68, 413, 1241
TaqI	TCGA	2 cut(s)	100, 113
TasI	AATT	4 cut(s)	11, 373, 448, 725
TatI	WGTACW	3 cut(s)	31, 73, 180
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	4 cut(s)	294, 350, 1048, 1272
Tru1I	TTAA	5 cut(s)	171, 246, 372, 642, 992
Tru9I	TTAA	5 cut(s)	171, 246, 372, 642, 992
TscAI	CASTG	5 cut(s)	61, 190, 211, 468, 903
TseFI	GTSAC	1 cut(s)	957
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	957
TspDTI	ATGAA	2 cut(s)	286, 845
TspGWI	ACGGA	2 cut(s)	457, 668
TspRI	CASTG	5 cut(s)	61, 190, 211, 468, 903
VpaK11BI	GGWCC	1 cut(s)	757
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	2 cut(s)	42, 1102
XspI	CTAG	2 cut(s)	363, 1293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.