Rh4DG352700

Belongs to the CDP-alcohol phosphatidyltransferase class-I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001984
Physical Location & Seq
Reverse (-)
57403725 .. 57407412
3688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG352700.1

Sequence Viewer

Length: 1002 bp
ATGAACTATGTGGTGTTATTTTCTGCCCAGATATATTCACCAAGATTGGATTCTGCTCCACCTAGATGGGTCAATTTTGCTCATGGATTGCTTCTTTTCCTATACCAGACCTTTGATGCTGTTGATGGCAAGCAAGCCAGACGAACAAATTCCTCAAGTCCACTGGGGGAACTTTTTGACCATGGTTGTGATGCCCTTGCATGTGCGCTTGAAGCGTTGGCTTTTGGGAGCACTGCAATGTGTGGAAGGAACACTTTCTGGTTCTGGGTGATTTCAGCTGTTCCATTTTACTTTGCAACTTGGGAGCATTACTTCACCAATACCCTAATACTTCCTGCCTTGAATGGGCCCACAGAGGGTCTCATGCTGATATATTTGAGTCATTGTTTCACAGCTTTTGTTGGTTCTGAGTGGTGGGCTCAACCATTTGGAAATTCTTTGCCTGTTCTGAGCTGGATCCCTTTTCTAAGTGAAATTACGATGGCCAACGCTGTGTTGTTTCTAATGATAGCTTTCGCTGTTATCCCAACAGTAACATTCAATGTTATGAATGTTTATAAGGTCGTCCAGGCAAGGAAAGGCAGCATGCTATTGGCACTGGCGATGCTTTATCCTTTTGCTGTTCTTTTGGGAGTAGTTTTGGCATGGGATTATTTGTCACCAGCTGGCATCATGAGGAACTATCCACATTTAGTCGTAATGGGAACCGGGCTTGCTTTTGGGTACCTTGTGGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCAAAGGGCTTGAAAACTGGAATGTGCATGTCATTGTTGTATCTCCCATTTGCCATTGCAAATGCACTCACAGCTAGACTGAACGACGGTGTTCCATTGGTTGATGACAGTTTGGTTCTCCTTGGTTACTGTGCATTTACAGTGACACTCTATCTTCACTTTGCAACATCAGTCATTCATGAAATTACGACAGCCTTGGGAATCTGTTGCTTCAGGATAACTAGGAAAGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko00565 ko01100 ko01110 map00440 map00564 map00565 map01100 map01110
Pfam Domains
Protein Families
CDP-OH_P_transf

Protein Analysis

333

Amino Acids

36.84

Weight (kDa)

6.43

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDP-OH_P_transf PF01066 29 - 94 1.7e-07 CDP-alcohol phosphatidyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 558
Acc65I GGTACC 1 cut(s) 723
AccB1I GGYRCC 1 cut(s) 723
AclWI GGATC 2 cut(s) 451, 464
AcoI YGGCCR 1 cut(s) 483
AcsI RAATTY 2 cut(s) 148, 433
AcuI CTGAAG 1 cut(s) 961
AfaI GTAC 1 cut(s) 725
AfiI CCNNNNNNNGG 2 cut(s) 345, 356
AgsI TTSAA 4 cut(s) 212, 343, 541, 778
AjnI CCWGG 1 cut(s) 567
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AleI CACNNNNGTG 1 cut(s) 756
AluBI AGCT 7 cut(s) 278, 395, 453, 512, 665, 839, 998
AluI AGCT 7 cut(s) 278, 395, 453, 512, 665, 839, 998
Alw21I GWGCWC 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 2 cut(s) 451, 464
AoxI GGCC 2 cut(s) 347, 483
ApaI GGGCCC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 582
ApoI RAATTY 2 cut(s) 148, 433
Asp700I GAANNNNTTC 2 cut(s) 148, 254
Asp718I GGTACC 1 cut(s) 723
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 347, 348
AsuC2I CCSGG 1 cut(s) 709
AsuHPI GGTGA 4 cut(s) 30, 280, 307, 651
BaeGI GKGCMC 1 cut(s) 351
BalI TGGCCA 1 cut(s) 485
BamHI GGATCC 1 cut(s) 456
BanI GGYRCC 1 cut(s) 723
BanII GRGCYC 2 cut(s) 351, 421
Bbv12I GWGCWC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 594
BccI CCATC 3 cut(s) 60, 119, 475
BciT130I CCWGG 1 cut(s) 569
BcnI CCSGG 1 cut(s) 709
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 3 cut(s) 63, 840, 987
BisI GCNGC 1 cut(s) 583
BlsI GCNGC 1 cut(s) 584
Bme1390I CCNGG 2 cut(s) 569, 709
BmgT120I GGNCC 2 cut(s) 347, 348
BmiI GGNNCC 4 cut(s) 349, 458, 706, 725
BmrFI CCNGG 2 cut(s) 569, 709
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 4 cut(s) 106, 181, 594, 678
BmuI ACTGGG 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 709
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 3 cut(s) 181, 886, 960
Bsc4I CCNNNNNNNGG 2 cut(s) 345, 356
Bse1I ACTGG 3 cut(s) 168, 603, 787
Bse3DI GCAATG 2 cut(s) 243, 819
BseBI CCWGG 1 cut(s) 569
BseDI CCNNGG 3 cut(s) 181, 886, 960
BseLI CCNNNNNNNGG 2 cut(s) 345, 356
BseMI GCAATG 2 cut(s) 243, 819
BseMII CTCAG 2 cut(s) 399, 440
BseNI ACTGG 3 cut(s) 168, 603, 787
BseSI GKGCMC 1 cut(s) 351
BseXI GCAGC 1 cut(s) 594
BshFI GGCC 2 cut(s) 349, 485
BshNI GGYRCC 1 cut(s) 723
BsiHKAI GWGCWC 1 cut(s) 233
BsiSI CCGG 1 cut(s) 708
BslI CCNNNNNNNGG 2 cut(s) 345, 356
BsmAI GTCTC 1 cut(s) 365
BsnI GGCC 2 cut(s) 349, 485
Bso31I GGTCTC 1 cut(s) 365
Bsp120I GGGCCC 1 cut(s) 347
Bsp1286I GDGCHC 3 cut(s) 233, 351, 421
Bsp143I GATC 1 cut(s) 456
Bsp19I CCATGG 1 cut(s) 181
BspANI GGCC 2 cut(s) 349, 485
BspCNI CTCAG 2 cut(s) 400, 441
BspHI TCATGA 2 cut(s) 672, 943
BspLI GGNNCC 4 cut(s) 349, 458, 706, 725
BspPI GGATC 2 cut(s) 451, 464
BspT107I GGYRCC 1 cut(s) 723
BspTNI GGTCTC 1 cut(s) 365
BsrDI GCAATG 2 cut(s) 243, 819
BsrI ACTGG 3 cut(s) 168, 603, 787
BssECI CCNNGG 3 cut(s) 181, 886, 960
BssMI GATC 1 cut(s) 456
BssT1I CCWWGG 3 cut(s) 181, 886, 960
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 5 cut(s) 532, 854, 875, 896, 907
BstC8I GCNNGC 5 cut(s) 131, 135, 587, 667, 714
BstDEI CTNAG 3 cut(s) 408, 449, 467
BstDSI CCRYGG 1 cut(s) 181
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 1 cut(s) 459
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 1 cut(s) 456
BstMWI GCNNNNNNNGC 2 cut(s) 212, 836
BstNI CCWGG 1 cut(s) 569
BstNSI RCATGY 3 cut(s) 204, 589, 796
BstSCI CCNGG 2 cut(s) 567, 707
BstSLI GKGCMC 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 594
BstX2I RGATCY 1 cut(s) 456
BstXI CCANNNNNNTGG 1 cut(s) 66
BstYI RGATCY 1 cut(s) 456
BsuRI GGCC 2 cut(s) 349, 485
BtgI CCRYGG 1 cut(s) 181
BtgZI GCGATG 1 cut(s) 617
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 4 cut(s) 161, 231, 596, 912
Cac8I GCNNGC 5 cut(s) 131, 135, 587, 667, 714
CciI TCATGA 2 cut(s) 672, 943
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 347, 348
Csp6I GTAC 1 cut(s) 724
CviAII CATG 9 cut(s) 83, 182, 201, 364, 586, 645, 673, 793, 944
CviQI GTAC 1 cut(s) 724
DdeI CTNAG 3 cut(s) 408, 449, 467
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
EaeI YGGCCR 1 cut(s) 483
Eco130I CCWWGG 3 cut(s) 181, 886, 960
Eco24I GRGCYC 2 cut(s) 351, 421
Eco31I GGTCTC 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 961
EcoRII CCWGG 1 cut(s) 567
EcoT14I CCWWGG 3 cut(s) 181, 886, 960
EcoT38I GRGCYC 2 cut(s) 351, 421
ErhI CCWWGG 3 cut(s) 181, 886, 960
FaeI CATG 9 cut(s) 86, 185, 204, 367, 589, 648, 676, 796, 947
FalI AAGNNNNNCTT 2 cut(s) 238, 270
FatI CATG 9 cut(s) 82, 181, 200, 363, 585, 644, 672, 792, 943
Fnu4HI GCNGC 1 cut(s) 583
FriOI GRGCYC 2 cut(s) 351, 421
Fsp4HI GCNGC 1 cut(s) 583
FspBI CTAG 3 cut(s) 63, 840, 987
GlaI GCGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 583
HaeIII GGCC 2 cut(s) 349, 485
HapII CCGG 1 cut(s) 708
HhaI GCGC 1 cut(s) 208
Hin1II CATG 9 cut(s) 86, 185, 204, 367, 589, 648, 676, 796, 947
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HindIII AAGCTT 1 cut(s) 996
HinfI GANTC 4 cut(s) 50, 379, 742, 966
HpaII CCGG 1 cut(s) 708
HphI GGTGA 4 cut(s) 30, 280, 307, 651
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 2 cut(s) 409, 450
Hpy188III TCNNGA 3 cut(s) 673, 944, 979
Hpy8I GTNNAC 1 cut(s) 161
Hpy99I CGWCG 1 cut(s) 854
HpyAV CCTTC 1 cut(s) 240
HpyCH4III ACNGT 5 cut(s) 532, 854, 875, 896, 907
HpyCH4V TGCA 8 cut(s) 200, 236, 296, 792, 824, 830, 899, 929
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 836
HpyF3I CTNAG 3 cut(s) 408, 449, 467
Hsp92II CATG 9 cut(s) 86, 185, 204, 367, 589, 648, 676, 796, 947
HspAI GCGC 1 cut(s) 206
KpnI GGTACC 1 cut(s) 727
Kzo9I GATC 1 cut(s) 456
LmnI GCTCC 3 cut(s) 61, 228, 304
Lsp1109I GCAGC 1 cut(s) 594
LweI GCATC 4 cut(s) 106, 181, 594, 678
MaeI CTAG 3 cut(s) 63, 840, 987
MaeIII GTNAC 4 cut(s) 532, 657, 890, 907
MalI GATC 1 cut(s) 458
MboI GATC 1 cut(s) 456
MboII GAAGA 2 cut(s) 747, 911
MflI RGATCY 1 cut(s) 456
MhlI GDGCHC 3 cut(s) 233, 351, 421
MlsI TGGCCA 1 cut(s) 485
MluCI AATT 5 cut(s) 73, 148, 433, 474, 948
MluNI TGGCCA 1 cut(s) 485
MlyI GAGTC 1 cut(s) 388
MnlI CCTC 3 cut(s) 163, 349, 669
Mox20I TGGCCA 1 cut(s) 485
MroXI GAANNNNTTC 2 cut(s) 148, 254
MscI TGGCCA 1 cut(s) 485
MslI CAYNNNNRTG 4 cut(s) 64, 186, 236, 756
Msp20I TGGCCA 1 cut(s) 485
MspA1I CMGCKG 2 cut(s) 278, 665
MspI CCGG 1 cut(s) 708
MspR9I CCNGG 2 cut(s) 569, 709
MvaI CCWGG 1 cut(s) 569
MwoI GCNNNNNNNGC 2 cut(s) 212, 836
NciI CCSGG 1 cut(s) 709
NcoI CCATGG 1 cut(s) 181
NdeII GATC 1 cut(s) 456
NlaIII CATG 9 cut(s) 86, 185, 204, 367, 589, 648, 676, 796, 947
NlaIV GGNNCC 4 cut(s) 349, 458, 706, 725
NmuCI GTSAC 2 cut(s) 657, 907
NspI RCATGY 3 cut(s) 204, 589, 796
OliI CACNNNNGTG 1 cut(s) 756
PaeI GCATGC 1 cut(s) 589
PagI TCATGA 2 cut(s) 672, 943
PdmI GAANNNNTTC 2 cut(s) 148, 254
PfeI GAWTC 3 cut(s) 50, 742, 966
PkrI GCNGC 1 cut(s) 584
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
PsiI TTATAA 1 cut(s) 558
Psp6I CCWGG 1 cut(s) 567
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 4 cut(s) 349, 458, 706, 725
PspOMI GGGCCC 1 cut(s) 347
PspPI GGNCC 2 cut(s) 347, 348
PsuI RGATCY 1 cut(s) 456
PvuII CAGCTG 2 cut(s) 278, 665
RsaI GTAC 1 cut(s) 725
RsaNI GTAC 1 cut(s) 724
RseI CAYNNNNRTG 4 cut(s) 64, 186, 236, 756
SatI GCNGC 1 cut(s) 583
Sau3AI GATC 1 cut(s) 456
Sau96I GGNCC 2 cut(s) 347, 348
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 2 cut(s) 569, 709
SduI GDGCHC 3 cut(s) 233, 351, 421
SfaNI GCATC 4 cut(s) 106, 181, 594, 678
SmiMI CAYNNNNRTG 4 cut(s) 64, 186, 236, 756
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
SphI GCATGC 1 cut(s) 589
Sse9I AATT 5 cut(s) 73, 148, 433, 474, 948
SspMI CTAG 3 cut(s) 63, 840, 987
StyD4I CCNGG 2 cut(s) 567, 707
StyI CCWWGG 3 cut(s) 181, 886, 960
TaaI ACNGT 5 cut(s) 532, 854, 875, 896, 907
TasI AATT 5 cut(s) 73, 148, 433, 474, 948
TfiI GAWTC 3 cut(s) 50, 742, 966
TscAI CASTG 4 cut(s) 168, 238, 603, 912
TseFI GTSAC 2 cut(s) 657, 907
TseI GCWGC 1 cut(s) 582
Tsp45I GTSAC 2 cut(s) 657, 907
TspDTI ATGAA 4 cut(s) 17, 563, 932, 960
TspRI CASTG 4 cut(s) 168, 238, 603, 912
XapI RAATTY 2 cut(s) 148, 433
XceI RCATGY 3 cut(s) 204, 589, 796
XmnI GAANNNNTTC 2 cut(s) 148, 254
XspI CTAG 3 cut(s) 63, 840, 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.