RLG00000006503

Belongs to the CDP-alcohol phosphatidyltransferase class-I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001984
Physical Location & Seq
Forward (+)
7751300 .. 7756068
4769 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006503

Sequence Viewer

Length: 999 bp
ATGCCGCCAAACATGATAACACTTACAGGGTTCATGTTCTTGCTCACATCTGCGCTGCTTGGCTATATATATTCACCAAGATTGGATTCTGCTCCACCTAGATGGACCTTTGATGCTGTTGATGGGAAGCAAGCCAGACGAACAAATTCCTCAAGTCCACTGGGGGAACTTTTTGACCATGGATGTGATGCCCTTGCATGTGCGCTTGAAGCGTTGGCTTTTGGGAGCACTGCAATGTGTGGAAGGAACACTTTCTGGTTCTGGGTGATTTCAGCTGTTCCATTTTACTTTGCAACTTGGGAGCATTACTTCACCAATACCCTAATACTTCCTGCCTTGAATGGGCCCACAGAGGGTCTCATGCTGATATATTTGAGTCATTGTTTCACAGCTTTTGTTGGTTCTGAGTGGTGGGCTCAACCATTTGGAAATTCTTTGCCTGTTCTGAGCTGGATCCCTTTTCTAAGTGCAATTACGATGGCCAACGCTGTGTTGTTTCTAATGATAACTTTTGCTGTTCTCCCAACAGTAACATTCAATGTTATGAATGTTTATAAGGTCGTCCAGGCAAGGAAAGGCAGCATGCTATTGGCACTGGCGATGCTTTATCCTTTTGCTGTTCTTTTGGGAGTAGTTTTGGCATGGGATTATTTGTCACCAGCTGGCATCATGAGGAACTATCCACATTTAGTCGTAATGGGAACTGGGCTTGCTTTTGGGTACCTTGTGGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCAAAGGGCTTGAAAACTGGAATGTGCATGTCATTGTTGTATCTCCCATTTGCCATTGCAAATGCACTCACAGCTAGACTGAATGATGGTGTTCCATTGGTTGATGACAGTTTGGTTCTCCTTGGTTACTGTGCATTTACAGCGACACTCTATCTTCACTTTGCAACATCAGTCATTCATGAAATTACGACAGCCTTGGGAATCTATTGCTTCAGGATAACTAGGAAAGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko00565 ko01100 ko01110 map00440 map00564 map00565 map01100 map01110
Pfam Domains
Protein Families
CDP-OH_P_transf

Protein Analysis

333

Amino Acids

36.59

Weight (kDa)

6.64

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDP-OH_P_transf PF01066 34 - 93 1.5e-06 CDP-alcohol phosphatidyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 555
Acc65I GGTACC 1 cut(s) 720
AccB1I GGYRCC 1 cut(s) 720
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 448, 461
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 2 cut(s) 145, 430
AcuI CTGAAG 1 cut(s) 958
AfaI GTAC 1 cut(s) 722
AfiI CCNNNNNNNGG 2 cut(s) 342, 353
AgsI TTSAA 4 cut(s) 209, 340, 538, 775
AjnI CCWGG 1 cut(s) 564
AjuI GAANNNNNNNTTGG 2 cut(s) 70, 102
AleI CACNNNNGTG 1 cut(s) 753
AluBI AGCT 6 cut(s) 275, 392, 450, 662, 836, 995
AluI AGCT 6 cut(s) 275, 392, 450, 662, 836, 995
Alw21I GWGCWC 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 362
AlwI GGATC 2 cut(s) 448, 461
AoxI GGCC 2 cut(s) 344, 480
ApaI GGGCCC 1 cut(s) 348
ApeKI GCWGC 2 cut(s) 55, 579
ApoI RAATTY 2 cut(s) 145, 430
Asp700I GAANNNNTTC 2 cut(s) 145, 251
Asp718I GGTACC 1 cut(s) 720
AspLEI GCGC 2 cut(s) 55, 205
AspS9I GGNCC 3 cut(s) 105, 344, 345
AsuHPI GGTGA 4 cut(s) 66, 277, 304, 648
AvaII GGWCC 1 cut(s) 105
BaeGI GKGCMC 1 cut(s) 348
BalI TGGCCA 1 cut(s) 482
BamHI GGATCC 1 cut(s) 453
BanI GGYRCC 1 cut(s) 720
BanII GRGCYC 2 cut(s) 348, 418
Bbv12I GWGCWC 1 cut(s) 230
BbvI GCAGC 2 cut(s) 42, 591
BccI CCATC 4 cut(s) 96, 116, 472, 842
BciT130I CCWGG 1 cut(s) 566
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 3 cut(s) 99, 837, 984
BisI GCNGC 3 cut(s) 5, 56, 580
BlsI GCNGC 3 cut(s) 6, 57, 581
Bme1390I CCNGG 1 cut(s) 566
Bme18I GGWCC 1 cut(s) 105
BmgT120I GGNCC 3 cut(s) 105, 344, 345
BmiI GGNNCC 3 cut(s) 346, 455, 722
BmrFI CCNGG 1 cut(s) 566
BmrI ACTGGG 2 cut(s) 170, 714
BmsI GCATC 4 cut(s) 103, 178, 591, 675
BmuI ACTGGG 2 cut(s) 170, 714
BpuEI CTTGAG 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 3 cut(s) 178, 883, 957
Bsc4I CCNNNNNNNGG 2 cut(s) 342, 353
Bse1I ACTGG 4 cut(s) 165, 600, 709, 784
Bse3DI GCAATG 2 cut(s) 240, 816
BseBI CCWGG 1 cut(s) 566
BseDI CCNNGG 3 cut(s) 178, 883, 957
BseGI GGATG 1 cut(s) 188
BseLI CCNNNNNNNGG 2 cut(s) 342, 353
BseMI GCAATG 2 cut(s) 240, 816
BseMII CTCAG 2 cut(s) 396, 437
BseNI ACTGG 4 cut(s) 165, 600, 709, 784
BseSI GKGCMC 1 cut(s) 348
BseXI GCAGC 2 cut(s) 42, 591
BshFI GGCC 2 cut(s) 346, 482
BshNI GGYRCC 1 cut(s) 720
BsiHKAI GWGCWC 1 cut(s) 230
BslI CCNNNNNNNGG 2 cut(s) 342, 353
BsmAI GTCTC 1 cut(s) 362
BsnI GGCC 2 cut(s) 346, 482
Bso31I GGTCTC 1 cut(s) 362
Bsp120I GGGCCC 1 cut(s) 344
Bsp1286I GDGCHC 3 cut(s) 230, 348, 418
Bsp143I GATC 1 cut(s) 453
Bsp19I CCATGG 1 cut(s) 178
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 346, 482
BspCNI CTCAG 2 cut(s) 397, 438
BspHI TCATGA 2 cut(s) 669, 940
BspLI GGNNCC 3 cut(s) 346, 455, 722
BspPI GGATC 2 cut(s) 448, 461
BspT107I GGYRCC 1 cut(s) 720
BspTNI GGTCTC 1 cut(s) 362
BsrDI GCAATG 2 cut(s) 240, 816
BsrI ACTGG 4 cut(s) 165, 600, 709, 784
BssECI CCNNGG 3 cut(s) 178, 883, 957
BssMI GATC 1 cut(s) 453
BssT1I CCWWGG 3 cut(s) 178, 883, 957
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 3 cut(s) 529, 872, 893
BstC8I GCNNGC 4 cut(s) 132, 584, 664, 711
BstDEI CTNAG 3 cut(s) 405, 446, 464
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 1 cut(s) 188
BstHHI GCGC 2 cut(s) 55, 205
BstKTI GATC 1 cut(s) 456
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 1 cut(s) 453
BstMWI GCNNNNNNNGC 3 cut(s) 209, 833, 902
BstNI CCWGG 1 cut(s) 566
BstNSI RCATGY 3 cut(s) 201, 586, 793
BstSCI CCNGG 1 cut(s) 564
BstSLI GKGCMC 1 cut(s) 348
BstV1I GCAGC 2 cut(s) 42, 591
BstX2I RGATCY 1 cut(s) 453
BstXI CCANNNNNNTGG 1 cut(s) 102
BstYI RGATCY 1 cut(s) 453
BsuRI GGCC 2 cut(s) 346, 482
BtgI CCRYGG 1 cut(s) 178
BtgZI GCGATG 1 cut(s) 614
BtsCI GGATG 1 cut(s) 188
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 3 cut(s) 158, 228, 593
Cac8I GCNNGC 4 cut(s) 132, 584, 664, 711
CciI TCATGA 2 cut(s) 669, 940
CfoI GCGC 2 cut(s) 55, 205
Cfr13I GGNCC 3 cut(s) 105, 344, 345
Csp6I GTAC 1 cut(s) 721
CviQI GTAC 1 cut(s) 721
DdeI CTNAG 3 cut(s) 405, 446, 464
DpnI GATC 1 cut(s) 455
DpnII GATC 1 cut(s) 453
EaeI YGGCCR 1 cut(s) 480
Eco130I CCWWGG 3 cut(s) 178, 883, 957
Eco24I GRGCYC 2 cut(s) 348, 418
Eco31I GGTCTC 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 958
EcoRII CCWGG 1 cut(s) 564
EcoT14I CCWWGG 3 cut(s) 178, 883, 957
EcoT38I GRGCYC 2 cut(s) 348, 418
ErhI CCWWGG 3 cut(s) 178, 883, 957
FalI AAGNNNNNCTT 2 cut(s) 235, 267
Fnu4HI GCNGC 3 cut(s) 5, 56, 580
FokI GGATG 1 cut(s) 195
FriOI GRGCYC 2 cut(s) 348, 418
Fsp4HI GCNGC 3 cut(s) 5, 56, 580
FspBI CTAG 3 cut(s) 99, 837, 984
GlaI GCGC 2 cut(s) 54, 204
GluI GCNGC 3 cut(s) 5, 56, 580
HaeIII GGCC 2 cut(s) 346, 482
HhaI GCGC 2 cut(s) 55, 205
Hin6I GCGC 2 cut(s) 53, 203
HinP1I GCGC 2 cut(s) 53, 203
HindIII AAGCTT 1 cut(s) 993
HinfI GANTC 4 cut(s) 86, 376, 739, 963
HphI GGTGA 4 cut(s) 66, 277, 304, 648
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 2 cut(s) 406, 447
Hpy188III TCNNGA 3 cut(s) 670, 941, 976
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 237
HpyCH4III ACNGT 3 cut(s) 529, 872, 893
HpyCH4V TGCA 9 cut(s) 197, 233, 293, 470, 789, 821, 827, 896, 926
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 833, 902
HpyF3I CTNAG 3 cut(s) 405, 446, 464
HspAI GCGC 2 cut(s) 53, 203
KpnI GGTACC 1 cut(s) 724
Kzo9I GATC 1 cut(s) 453
LmnI GCTCC 3 cut(s) 97, 225, 301
Lsp1109I GCAGC 2 cut(s) 42, 591
LweI GCATC 4 cut(s) 103, 178, 591, 675
MaeI CTAG 3 cut(s) 99, 837, 984
MaeIII GTNAC 3 cut(s) 529, 654, 887
MalI GATC 1 cut(s) 455
MboI GATC 1 cut(s) 453
MboII GAAGA 2 cut(s) 744, 908
MflI RGATCY 1 cut(s) 453
MhlI GDGCHC 3 cut(s) 230, 348, 418
MlsI TGGCCA 1 cut(s) 482
MluCI AATT 4 cut(s) 145, 430, 471, 945
MluNI TGGCCA 1 cut(s) 482
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 3 cut(s) 160, 346, 666
Mox20I TGGCCA 1 cut(s) 482
MroXI GAANNNNTTC 2 cut(s) 145, 251
MscI TGGCCA 1 cut(s) 482
MslI CAYNNNNRTG 4 cut(s) 100, 183, 233, 753
Msp20I TGGCCA 1 cut(s) 482
MspA1I CMGCKG 2 cut(s) 275, 662
MspR9I CCNGG 1 cut(s) 566
MvaI CCWGG 1 cut(s) 566
MwoI GCNNNNNNNGC 3 cut(s) 209, 833, 902
NcoI CCATGG 1 cut(s) 178
NdeII GATC 1 cut(s) 453
NlaIV GGNNCC 3 cut(s) 346, 455, 722
NmuCI GTSAC 1 cut(s) 654
NspI RCATGY 3 cut(s) 201, 586, 793
OliI CACNNNNGTG 1 cut(s) 753
PaeI GCATGC 1 cut(s) 586
PagI TCATGA 2 cut(s) 669, 940
PdmI GAANNNNTTC 2 cut(s) 145, 251
PfeI GAWTC 3 cut(s) 86, 739, 963
PkrI GCNGC 3 cut(s) 6, 57, 581
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
PsiI TTATAA 1 cut(s) 555
Psp6I CCWGG 1 cut(s) 564
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 3 cut(s) 346, 455, 722
PspOMI GGGCCC 1 cut(s) 344
PspPI GGNCC 3 cut(s) 105, 344, 345
PsuI RGATCY 1 cut(s) 453
PvuII CAGCTG 2 cut(s) 275, 662
RsaI GTAC 1 cut(s) 722
RsaNI GTAC 1 cut(s) 721
RseI CAYNNNNRTG 4 cut(s) 100, 183, 233, 753
SatI GCNGC 3 cut(s) 5, 56, 580
Sau3AI GATC 1 cut(s) 453
Sau96I GGNCC 3 cut(s) 105, 344, 345
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 566
SduI GDGCHC 3 cut(s) 230, 348, 418
SfaNI GCATC 4 cut(s) 103, 178, 591, 675
SinI GGWCC 1 cut(s) 105
SmiMI CAYNNNNRTG 4 cut(s) 100, 183, 233, 753
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
SphI GCATGC 1 cut(s) 586
Sse9I AATT 4 cut(s) 145, 430, 471, 945
SsiI CCGC 1 cut(s) 5
SspMI CTAG 3 cut(s) 99, 837, 984
StyD4I CCNGG 1 cut(s) 564
StyI CCWWGG 3 cut(s) 178, 883, 957
TaaI ACNGT 3 cut(s) 529, 872, 893
TasI AATT 4 cut(s) 145, 430, 471, 945
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 3 cut(s) 86, 739, 963
TscAI CASTG 3 cut(s) 165, 235, 600
TseFI GTSAC 1 cut(s) 654
TseI GCWGC 2 cut(s) 55, 579
Tsp45I GTSAC 1 cut(s) 654
TspDTI ATGAA 4 cut(s) 22, 560, 929, 957
TspRI CASTG 3 cut(s) 165, 235, 600
VpaK11BI GGWCC 1 cut(s) 105
XapI RAATTY 2 cut(s) 145, 430
XceI RCATGY 3 cut(s) 201, 586, 793
XmnI GAANNNNTTC 2 cut(s) 145, 251
XspI CTAG 3 cut(s) 99, 837, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.