MD16G1057500.v1.1

Belongs to the CDP-alcohol phosphatidyltransferase class-I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0001984
Physical Location & Seq
Forward (+)
4112304 .. 4118600
6297 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1057500.v1.1.491

Sequence Viewer

Length: 1170 bp
ATGGGGTATATTGGGGCACATGGTGTGGCTGCTTTGCATAAATACAAGTACAGTGGCGTGGATCACTCTTACACTGCCAAATATGTCTTGCAACCCTTTTGGAGTAGCTTCGTTAAAATCTTTCCCCTTTGGATGCCGCCCAACATGATAACTCTAATAGGATTCATGTTCTTGCTCACATCCGCTCTGCTTGGCTATATATATTCACCACGACTGGATTCAGCTCCTCCTAGATGGGTTAATTTCGCTCATGGATTGCTACTTTTCTTATACCAGACCTTTGATGCCGTTGATGGGAAACAAGCAAGACGGACAAATTCCTCAAGTCCACTGGGGGAACTTTTTGACCATGGTTGTGATGCCCTTGCCTGTGCGTTCGAAGCATTGGCCTTTGGAAGTACTGCGATGTGTGGAAGATCTACTTTCTGGTTCTGGGTGATTTCAGCTGTTCCATTTTACTTTGCTACTTGGGAGTCTTACTTTACCAATACCCTAATCCTTCCTGCTGTTAATGGGCCCACGGAGGGTCTAATGCTGATATATTTGGCCCATTTTTTCACAGCTATCGTTGGTTCTGAGTGGTGGGCTCTACAATTTGGAAAGTCTTTGCCTTTTCTGAGTTGGGTTCCCGTTCTTAGTGAAATCCCAACAAACAAAGCTGTGCTGTACCTAATGGTAGCTTTTGCTGTCATCCCAACGCTCACATTCAATGTGTCCAATGTTCATAAGGTTGTTCAAGCAAGGAAAGCAAGTATGCTATTGGCACTGGCAATGATTTACCCTTTCGTAGTCCTTTTGGTAGGAGTTTTGGCATGGGGTTACTTGTCACCAGCTGACATTATGGGGAACTATCCACATTTAGTCGTTCTGGGAAGTGGGCTTGCTTTTGGGTACCTTGTGGGAAGATTGATTCTTGCGCACTTATGTGATGAGCCAAAGGGTTTGAAAACTGGAATGTGCATGTCATTGTTGTATCTCCCATTTGCCATTGCAAATGCACTCACAGCTAAACTGAACGATGGAGTTCCTTTGGTTGATGAGAGCTTGGTTCTTCTTGGTTACTGTGCATTTACAGCGACACTCTATCTTCACTTTGCAACGTCAGTCATTCACGAGATCACAACAGCCTTGGGAATCTATTGCTTTAGGATAACTAGGAAGGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko00565 ko01100 ko01110 map00440 map00564 map00565 map01100 map01110
Pfam Domains
Protein Families
CDP-OH_P_transf

Protein Analysis

390

Amino Acids

42.99

Weight (kDa)

8.09

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDP-OH_P_transf PF01066 45 - 154 1.5e-09 CDP-alcohol phosphatidyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 918
Acc65I GGTACC 1 cut(s) 891
AccB1I GGYRCC 1 cut(s) 891
AccBSI CCGCTC 1 cut(s) 185
AciI CCGC 2 cut(s) 137, 183
AclWI GGATC 1 cut(s) 69
AcsI RAATTY 1 cut(s) 316
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 4 cut(s) 50, 400, 668, 893
AfiI CCNNNNNNNGG 2 cut(s) 294, 524
AgsI TTSAA 3 cut(s) 709, 737, 946
AleI CACNNNNGTG 1 cut(s) 924
AlwI GGATC 1 cut(s) 69
AoxI GGCC 3 cut(s) 387, 515, 546
ApaI GGGCCC 1 cut(s) 519
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 316
Asp718I GGTACC 1 cut(s) 891
AspLEI GCGC 1 cut(s) 919
AspS9I GGNCC 3 cut(s) 515, 516, 547
AsuHPI GGTGA 3 cut(s) 198, 448, 819
AsuII TTCGAA 1 cut(s) 378
BaeGI GKGCMC 2 cut(s) 19, 519
BanI GGYRCC 1 cut(s) 891
BanII GRGCYC 2 cut(s) 519, 589
BauI CACGAG 1 cut(s) 1112
BbvI GCAGC 1 cut(s) 16
BccI CCATC 3 cut(s) 228, 287, 1013
BceAI ACGGC 1 cut(s) 272
BfaI CTAG 2 cut(s) 231, 1155
BglII AGATCT 1 cut(s) 416
BisI GCNGC 2 cut(s) 30, 137
BlsI GCNGC 2 cut(s) 31, 138
BmcAI AGTACT 1 cut(s) 400
BmgT120I GGNCC 3 cut(s) 515, 516, 547
BmiI GGNNCC 3 cut(s) 517, 627, 893
BmrI ACTGGG 1 cut(s) 341
BmsI GCATC 3 cut(s) 123, 274, 349
BmuI ACTGGG 1 cut(s) 341
Bpu14I TTCGAA 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 307
BsaJI CCNNGG 3 cut(s) 349, 519, 1128
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 524
Bse1I ACTGG 4 cut(s) 219, 336, 771, 955
Bse3DI GCAATG 2 cut(s) 777, 987
BseDI CCNNGG 3 cut(s) 349, 519, 1128
BseGI GGATG 3 cut(s) 138, 179, 690
BseLI CCNNNNNNNGG 2 cut(s) 294, 524
BseMI GCAATG 2 cut(s) 777, 987
BseMII CTCAG 2 cut(s) 567, 608
BseNI ACTGG 4 cut(s) 219, 336, 771, 955
BseRI GAGGAG 1 cut(s) 216
BseSI GKGCMC 2 cut(s) 19, 519
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 3 cut(s) 389, 517, 548
BshNI GGYRCC 1 cut(s) 891
BslI CCNNNNNNNGG 2 cut(s) 294, 524
BsnI GGCC 3 cut(s) 389, 517, 548
Bsp119I TTCGAA 1 cut(s) 378
Bsp120I GGGCCC 1 cut(s) 515
Bsp1286I GDGCHC 3 cut(s) 19, 519, 589
Bsp143I GATC 3 cut(s) 61, 416, 1116
Bsp19I CCATGG 1 cut(s) 349
BspACI CCGC 2 cut(s) 137, 183
BspANI GGCC 3 cut(s) 389, 517, 548
BspCNI CTCAG 2 cut(s) 568, 609
BspLI GGNNCC 3 cut(s) 517, 627, 893
BspPI GGATC 1 cut(s) 69
BspT104I TTCGAA 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 891
BsrBI CCGCTC 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 777, 987
BsrI ACTGG 4 cut(s) 219, 336, 771, 955
BssECI CCNNGG 3 cut(s) 349, 519, 1128
BssMI GATC 3 cut(s) 61, 416, 1116
BssSI CACGAG 1 cut(s) 1112
BssT1I CCWWGG 2 cut(s) 349, 1128
Bst2BI CACGAG 1 cut(s) 1112
Bst4CI ACNGT 2 cut(s) 53, 1064
BstBI TTCGAA 1 cut(s) 378
BstC8I GCNNGC 1 cut(s) 882
BstDEI CTNAG 3 cut(s) 576, 617, 635
BstDSI CCRYGG 2 cut(s) 349, 519
BstF5I GGATG 3 cut(s) 138, 179, 690
BstHHI GCGC 1 cut(s) 919
BstKTI GATC 3 cut(s) 64, 419, 1119
BstMBI GATC 3 cut(s) 61, 416, 1116
BstMWI GCNNNNNNNGC 4 cut(s) 380, 746, 1004, 1073
BstNSI RCATGY 1 cut(s) 964
BstSLI GKGCMC 2 cut(s) 19, 519
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
BsuRI GGCC 3 cut(s) 389, 517, 548
BtgI CCRYGG 2 cut(s) 349, 519
BtgZI GCGATG 1 cut(s) 419
BtsCI GGATG 3 cut(s) 138, 179, 690
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 4 cut(s) 58, 72, 329, 764
Cac8I GCNNGC 1 cut(s) 882
CfoI GCGC 1 cut(s) 919
Cfr13I GGNCC 3 cut(s) 515, 516, 547
Csp6I GTAC 4 cut(s) 49, 399, 667, 892
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 7 cut(s) 20, 145, 166, 251, 350, 813, 961
CviQI GTAC 4 cut(s) 49, 399, 667, 892
DdeI CTNAG 3 cut(s) 576, 617, 635
DpnI GATC 3 cut(s) 63, 418, 1118
DpnII GATC 3 cut(s) 61, 416, 1116
DraIII CACNNNGTG 1 cut(s) 23
Eco130I CCWWGG 2 cut(s) 349, 1128
Eco24I GRGCYC 2 cut(s) 519, 589
EcoT14I CCWWGG 2 cut(s) 349, 1128
EcoT38I GRGCYC 2 cut(s) 519, 589
ErhI CCWWGG 2 cut(s) 349, 1128
FaeI CATG 7 cut(s) 23, 148, 169, 254, 353, 816, 964
FalI AAGNNNNNCTT 2 cut(s) 406, 438
FatI CATG 7 cut(s) 19, 144, 165, 250, 349, 812, 960
Fnu4HI GCNGC 2 cut(s) 30, 137
FokI GGATG 3 cut(s) 145, 166, 677
FriOI GRGCYC 2 cut(s) 519, 589
Fsp4HI GCNGC 2 cut(s) 30, 137
FspBI CTAG 2 cut(s) 231, 1155
FspI TGCGCA 1 cut(s) 918
GlaI GCGC 1 cut(s) 918
GluI GCNGC 2 cut(s) 30, 137
HaeIII GGCC 3 cut(s) 389, 517, 548
HhaI GCGC 1 cut(s) 919
Hin1II CATG 7 cut(s) 23, 148, 169, 254, 353, 816, 964
Hin6I GCGC 1 cut(s) 917
HinP1I GCGC 1 cut(s) 917
HindIII AAGCTT 1 cut(s) 1164
HinfI GANTC 5 cut(s) 162, 218, 473, 910, 1134
HphI GGTGA 3 cut(s) 198, 448, 819
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 2 cut(s) 577, 618
Hpy188III TCNNGA 1 cut(s) 1112
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 2 cut(s) 509, 1153
HpyCH4III ACNGT 2 cut(s) 53, 1064
HpyCH4IV ACGT 1 cut(s) 1100
HpyCH4V TGCA 7 cut(s) 37, 91, 960, 992, 998, 1067, 1097
HpyF10VI GCNNNNNNNGC 4 cut(s) 380, 746, 1004, 1073
HpyF3I CTNAG 3 cut(s) 576, 617, 635
HpySE526I ACGT 1 cut(s) 1100
Hsp92II CATG 7 cut(s) 23, 148, 169, 254, 353, 816, 964
HspAI GCGC 1 cut(s) 917
KpnI GGTACC 1 cut(s) 895
Kzo9I GATC 3 cut(s) 61, 416, 1116
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 3 cut(s) 123, 274, 349
MaeI CTAG 2 cut(s) 231, 1155
MaeII ACGT 1 cut(s) 1100
MaeIII GTNAC 3 cut(s) 818, 825, 1058
MalI GATC 3 cut(s) 63, 418, 1118
MbiI CCGCTC 1 cut(s) 185
MboI GATC 3 cut(s) 61, 416, 1116
MboII GAAGA 4 cut(s) 426, 915, 1043, 1079
MflI RGATCY 1 cut(s) 416
MhlI GDGCHC 3 cut(s) 19, 519, 589
MluCI AATT 3 cut(s) 241, 316, 593
MlyI GAGTC 1 cut(s) 482
MnlI CCTC 3 cut(s) 237, 331, 517
MseI TTAA 3 cut(s) 114, 240, 510
MslI CAYNNNNRTG 2 cut(s) 354, 924
MspA1I CMGCKG 2 cut(s) 446, 833
MwoI GCNNNNNNNGC 4 cut(s) 380, 746, 1004, 1073
NcoI CCATGG 1 cut(s) 349
NdeII GATC 3 cut(s) 61, 416, 1116
NlaIII CATG 7 cut(s) 23, 148, 169, 254, 353, 816, 964
NlaIV GGNNCC 3 cut(s) 517, 627, 893
NmuCI GTSAC 1 cut(s) 825
NsbI TGCGCA 1 cut(s) 918
NspI RCATGY 1 cut(s) 964
NspV TTCGAA 1 cut(s) 378
OliI CACNNNNGTG 1 cut(s) 924
PfeI GAWTC 4 cut(s) 162, 218, 910, 1134
PkrI GCNGC 2 cut(s) 31, 138
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PspN4I GGNNCC 3 cut(s) 517, 627, 893
PspOMI GGGCCC 1 cut(s) 515
PspPI GGNCC 3 cut(s) 515, 516, 547
PsuI RGATCY 1 cut(s) 416
PvuII CAGCTG 2 cut(s) 446, 833
RsaI GTAC 4 cut(s) 50, 400, 668, 893
RsaNI GTAC 4 cut(s) 49, 399, 667, 892
RseI CAYNNNNRTG 2 cut(s) 354, 924
SaqAI TTAA 3 cut(s) 114, 240, 510
SatI GCNGC 2 cut(s) 30, 137
Sau3AI GATC 3 cut(s) 61, 416, 1116
Sau96I GGNCC 3 cut(s) 515, 516, 547
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 1 cut(s) 482
SduI GDGCHC 3 cut(s) 19, 519, 589
SfaNI GCATC 3 cut(s) 123, 274, 349
SfuI TTCGAA 1 cut(s) 378
SmiMI CAYNNNNRTG 2 cut(s) 354, 924
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 3 cut(s) 241, 316, 593
SsiI CCGC 2 cut(s) 137, 183
SspMI CTAG 2 cut(s) 231, 1155
StyI CCWWGG 2 cut(s) 349, 1128
TaaI ACNGT 2 cut(s) 53, 1064
TaiI ACGT 1 cut(s) 1103
TaqI TCGA 1 cut(s) 378
TasI AATT 3 cut(s) 241, 316, 593
TatI WGTACW 2 cut(s) 48, 398
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 4 cut(s) 162, 218, 910, 1134
Tru1I TTAA 3 cut(s) 114, 240, 510
Tru9I TTAA 3 cut(s) 114, 240, 510
TscAI CASTG 4 cut(s) 58, 79, 336, 771
TseFI GTSAC 1 cut(s) 825
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 825
TspDTI ATGAA 2 cut(s) 154, 713
TspGWI ACGGA 2 cut(s) 325, 536
TspRI CASTG 4 cut(s) 58, 79, 336, 771
XapI RAATTY 1 cut(s) 316
XceI RCATGY 1 cut(s) 964
XspI CTAG 2 cut(s) 231, 1155
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.