Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016627.1

Orthogroup ID

OG0001984

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3802

Gene Structure 3802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016627.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 685 bp

cgaaaaggcagagcttgattcggaagaaatgggatatattggggcacatggtgtgaatgctttgcacagatacaagtatagtggtgtggatcactccttggtctccaaatatgtcttgaatcccttctggacacgctttgttaacttctttcccctatggatgccgccaaacatgataacacttacagggttcatgttcttgctcacatctgcgctgcttggctatatatattcaccaagattggattctgctccacctagatgggtcaattttgctcatggattgcttcttttcctataccagacctttgatgctgttgatggcaagcaagccagacgaacaaattcctcaagtccactgggggaactttttgaccatggatgtgatgcccttgcatgtgcgcttgaagcgttggcttttgggagcactgcaatgtgtggaacgaacactttctggttctgggtgatttcagctgttccattttactttgcaacttgggagcattacttcaccaataccctaatacttcctgccttgaatgggcccacagagggtctcatgctgatatatttgagtcattgtttcacagcttttgttggttctgagtggtgggctcaaccatttggaaattctttgcctgttctgagctggatcccttttctaagtggtaagagtataatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko00565 ko01100 ko01110 map00440 map00564 map00565 map01100 map01110

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

227

Amino Acids

25.55

Weight (kDa)

5.74

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13560 AT1G13560 AT1G13560 AT3G25585 AT3G25585 AT3G25585 AT3G25585 AT3G25585 AT3G25585
fragaria_vesca	FvH4_4g28600 FvH4_4g28600
malus_domestica	MD12G1007000.v1.1 MD16G1057500.v1.1
prunus_persica	Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1
pyrus_communis	pycom03g00010 pycom12g00510 pycom16g05030
rosa_chinensis	RchiOBHm_Chr4g0436691
rosa_laevigata	RLG00000006503
rosa_multiflora	Rmu_sc0016627.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377770
rosa_rugosa	Rorug04G0295300 Rorug04G0295400
rosa_samantha	Rh4AG349800 Rh4BG358500 Rh4CG372900 Rh4DG352700
rosa_wichuraiana	Rw4G030600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	3 cut(s)	97, 647, 660
AcsI	RAATTY	2 cut(s)	344, 629
AdeI	CACNNNGTG	1 cut(s)	51
AfiI	CCNNNNNNNGG	2 cut(s)	541, 552
AgsI	TTSAA	3 cut(s)	119, 408, 539
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	4 cut(s)	14, 474, 591, 649
AluI	AGCT	4 cut(s)	14, 474, 591, 649
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	2 cut(s)	107, 561
AlwI	GGATC	3 cut(s)	97, 647, 660
AoxI	GGCC	1 cut(s)	543
ApaI	GGGCCC	1 cut(s)	547
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	2 cut(s)	344, 629
Asp700I	GAANNNNTTC	3 cut(s)	123, 344, 450
AspLEI	GCGC	2 cut(s)	215, 404
AspS9I	GGNCC	2 cut(s)	543, 544
AsuHPI	GGTGA	3 cut(s)	226, 476, 503
BaeGI	GKGCMC	2 cut(s)	47, 547
BamHI	GGATCC	1 cut(s)	652
BanII	GRGCYC	2 cut(s)	547, 617
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	2 cut(s)	256, 315
BcoDI	GTCTC	2 cut(s)	107, 561
BfaI	CTAG	1 cut(s)	259
BisI	GCNGC	2 cut(s)	165, 216
BlsI	GCNGC	2 cut(s)	166, 217
BmgT120I	GGNCC	2 cut(s)	543, 544
BmiI	GGNNCC	2 cut(s)	545, 654
BmrI	ACTGGG	1 cut(s)	369
BmsI	GCATC	3 cut(s)	151, 302, 377
BmuI	ACTGGG	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	335
BsaI	GGTCTC	2 cut(s)	107, 561
BsaJI	CCNNGG	2 cut(s)	97, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	541, 552
Bse1I	ACTGG	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	439
BseDI	CCNNGG	2 cut(s)	97, 377
BseGI	GGATG	2 cut(s)	166, 387
BseLI	CCNNNNNNNGG	2 cut(s)	541, 552
BseMI	GCAATG	1 cut(s)	439
BseMII	CTCAG	2 cut(s)	595, 636
BseNI	ACTGG	1 cut(s)	364
BseSI	GKGCMC	2 cut(s)	47, 547
BseXI	GCAGC	1 cut(s)	202
BshFI	GGCC	1 cut(s)	545
BsiHKAI	GWGCWC	1 cut(s)	429
BslI	CCNNNNNNNGG	2 cut(s)	541, 552
BsmAI	GTCTC	2 cut(s)	107, 561
BsmI	GAATGC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	545
Bso31I	GGTCTC	2 cut(s)	107, 561
Bsp120I	GGGCCC	1 cut(s)	543
Bsp1286I	GDGCHC	4 cut(s)	47, 429, 547, 617
Bsp143I	GATC	2 cut(s)	89, 652
Bsp19I	CCATGG	1 cut(s)	377
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	545
BspCNI	CTCAG	2 cut(s)	596, 637
BspLI	GGNNCC	2 cut(s)	545, 654
BspPI	GGATC	3 cut(s)	97, 647, 660
BspTNI	GGTCTC	2 cut(s)	107, 561
BsrDI	GCAATG	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	97, 377
BssMI	GATC	2 cut(s)	89, 652
BssT1I	CCWWGG	2 cut(s)	97, 377
BstC8I	GCNNGC	2 cut(s)	327, 331
BstDEI	CTNAG	3 cut(s)	604, 645, 663
BstDSI	CCRYGG	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	166, 387
BstHHI	GCGC	2 cut(s)	215, 404
BstKTI	GATC	2 cut(s)	92, 655
BstMAI	GTCTC	2 cut(s)	107, 561
BstMBI	GATC	2 cut(s)	89, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	400
BstSLI	GKGCMC	2 cut(s)	47, 547
BstV1I	GCAGC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	652
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	652
BsuRI	GGCC	1 cut(s)	545
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	166, 387
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	2 cut(s)	357, 427
Cac8I	GCNNGC	2 cut(s)	327, 331
CfoI	GCGC	2 cut(s)	215, 404
Cfr13I	GGNCC	2 cut(s)	543, 544
CspCI	CAANNNNNGTGG	2 cut(s)	62, 97
CviAII	CATG	7 cut(s)	48, 173, 194, 279, 378, 397, 560
CviJI	RGCY	9 cut(s)	14, 223, 333, 417, 474, 545, 591, 615, 649
CviKI_1	RGCY	9 cut(s)	14, 223, 333, 417, 474, 545, 591, 615, 649
DdeI	CTNAG	3 cut(s)	604, 645, 663
DpnI	GATC	2 cut(s)	91, 654
DpnII	GATC	2 cut(s)	89, 652
DraIII	CACNNNGTG	1 cut(s)	51
Eco130I	CCWWGG	2 cut(s)	97, 377
Eco24I	GRGCYC	2 cut(s)	547, 617
Eco31I	GGTCTC	2 cut(s)	107, 561
EcoT14I	CCWWGG	2 cut(s)	97, 377
EcoT38I	GRGCYC	2 cut(s)	547, 617
ErhI	CCWWGG	2 cut(s)	97, 377
FaeI	CATG	7 cut(s)	51, 176, 197, 282, 381, 400, 563
FatI	CATG	7 cut(s)	47, 172, 193, 278, 377, 396, 559
Fnu4HI	GCNGC	2 cut(s)	165, 216
FokI	GGATG	2 cut(s)	173, 394
FriOI	GRGCYC	2 cut(s)	547, 617
Fsp4HI	GCNGC	2 cut(s)	165, 216
FspBI	CTAG	1 cut(s)	259
GlaI	GCGC	2 cut(s)	214, 403
GluI	GCNGC	2 cut(s)	165, 216
HaeIII	GGCC	1 cut(s)	545
HhaI	GCGC	2 cut(s)	215, 404
Hin1II	CATG	7 cut(s)	51, 176, 197, 282, 381, 400, 563
Hin6I	GCGC	2 cut(s)	213, 402
HinP1I	GCGC	2 cut(s)	213, 402
HincII	GTYRAC	1 cut(s)	143
HindII	GTYRAC	1 cut(s)	143
HinfI	GANTC	4 cut(s)	18, 119, 246, 575
HpaI	GTTAAC	1 cut(s)	143
HphI	GGTGA	3 cut(s)	226, 476, 503
Hpy166II	GTNNAC	2 cut(s)	143, 357
Hpy188I	TCNGA	3 cut(s)	23, 605, 646
Hpy188III	TCNNGA	2 cut(s)	116, 128
Hpy8I	GTNNAC	2 cut(s)	143, 357
HpyAV	CCTTC	1 cut(s)	134
HpyCH4V	TGCA	4 cut(s)	65, 396, 432, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	408
HpyF3I	CTNAG	3 cut(s)	604, 645, 663
Hsp92II	CATG	7 cut(s)	51, 176, 197, 282, 381, 400, 563
HspAI	GCGC	2 cut(s)	213, 402
KspAI	GTTAAC	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	89, 652
LmnI	GCTCC	3 cut(s)	257, 424, 500
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	3 cut(s)	151, 302, 377
MaeI	CTAG	1 cut(s)	259
MalI	GATC	2 cut(s)	91, 654
MboI	GATC	2 cut(s)	89, 652
MboII	GAAGA	1 cut(s)	36
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	4 cut(s)	47, 429, 547, 617
MluCI	AATT	4 cut(s)	269, 344, 629, 679
MlyI	GAGTC	1 cut(s)	584
MnlI	CCTC	2 cut(s)	359, 545
MroXI	GAANNNNTTC	3 cut(s)	123, 344, 450
MseI	TTAA	1 cut(s)	142
MslI	CAYNNNNRTG	3 cut(s)	260, 382, 432
MspA1I	CMGCKG	1 cut(s)	474
Mva1269I	GAATGC	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	408
NcoI	CCATGG	1 cut(s)	377
NdeII	GATC	2 cut(s)	89, 652
NlaIII	CATG	7 cut(s)	51, 176, 197, 282, 381, 400, 563
NlaIV	GGNNCC	2 cut(s)	545, 654
NspI	RCATGY	1 cut(s)	400
PctI	GAATGC	1 cut(s)	62
PdmI	GAANNNNTTC	3 cut(s)	123, 344, 450
PfeI	GAWTC	3 cut(s)	18, 119, 246
PkrI	GCNGC	2 cut(s)	166, 217
PleI	GAGTC	1 cut(s)	583
PpsI	GAGTC	1 cut(s)	583
PspN4I	GGNNCC	2 cut(s)	545, 654
PspOMI	GGGCCC	1 cut(s)	543
PspPI	GGNCC	2 cut(s)	543, 544
PsuI	RGATCY	1 cut(s)	652
PvuII	CAGCTG	1 cut(s)	474
RseI	CAYNNNNRTG	3 cut(s)	260, 382, 432
SaqAI	TTAA	1 cut(s)	142
SatI	GCNGC	2 cut(s)	165, 216
Sau3AI	GATC	2 cut(s)	89, 652
Sau96I	GGNCC	2 cut(s)	543, 544
SchI	GAGTC	1 cut(s)	584
SduI	GDGCHC	4 cut(s)	47, 429, 547, 617
SetI	ASST	6 cut(s)	16, 260, 309, 476, 593, 651
SfaNI	GCATC	3 cut(s)	151, 302, 377
SmiMI	CAYNNNNRTG	3 cut(s)	260, 382, 432
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	4 cut(s)	269, 344, 629, 679
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	259
StyI	CCWWGG	2 cut(s)	97, 377
TasI	AATT	4 cut(s)	269, 344, 629, 679
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	3 cut(s)	18, 119, 246
Tru1I	TTAA	1 cut(s)	142
Tru9I	TTAA	1 cut(s)	142
TscAI	CASTG	2 cut(s)	364, 434
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	364, 434
XapI	RAATTY	2 cut(s)	344, 629
XceI	RCATGY	1 cut(s)	400
XmnI	GAANNNNTTC	3 cut(s)	123, 344, 450
XspI	CTAG	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.