Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001984

Physical Location & Seq

Genomic Coordinates Forward (+)

3243018 .. 3247481

Gene Structure 4464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05030.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGATTAATGTGTTGAATCACAAAAATTTGAATTTGGATTTTCATATCGATCCAATTATCTTGGGGGCAAGTTTACAAGCATGTATGATTGTATTCAGTGATGGGTTGGTTGTACTGAGGCTTATTTGGATTTTGTTTCGAAGCGAAAAATCGAAGCTTTATTTGGAAGAGATGGGGTATATTGGGGCACATGGTGTGGCTGCTTTGCATAAATACAAGTACAGTGGCGTGGATCACTCTTACACTGCCAAATATGTCTTGCAACCCTTTTGGAGTAGCTTCGTTAAAATCTTTCCTCTTTGGATGCCGCCCAACATGATAACTTTAACAGGATTCATGTTCTTGCTCACATCCGCTCTGCTTGGCTATATATATTCACCACGACTGGATTCAGCTCCTCCTAGATGGGTTAATTTCACTCATGGATTGCTACTTTTCTTATACCAGACCTTTGATGCCGTTGATGGGAAACAAGCAAGACGGACAAATTCGTCAAGTCCACTGGGGGAACTTTTTGACCATGGTTGTGATGCCCTTGCCTGTGCGTTCGAAGCATTGGCCTTTGGAAGTACTGCGATGTGTGGAAGATCTACTTTCTGGTTCTGGGTGATTTCAGCTGTTCCATTTTACTTTGCTACTTGGGAGTCTTACTTTACCAATACCCTAATCCTTCCTGCTGTTAATGGACCCACGGAGGGTCTAATGCTGATATATTTTGCCCATTTTTTCACAGCTATCGTTGGTTCTGAGTGGTGGGCTCTACAATTTGGAAAGTCTTTGCCTTTTCTGAGTTGGGTCCCCGTTCTTAGTGAAATCCCAACATACAAAGCTGTGTTGTATCTAATGATAGCTTTTGCTGTCATCCCAACGCTCACATTCAATGTGTCCAATGTTCATAAGGTTGTTCAAGCAAGGAAAGCAAGTATGCTATTGGCACTGGCAATGATTTACCCTTTTGTAGTCCTTTTGGTAGGAGTTTTGGCATGGGGTTACTTGTCACCAGCTGACATTATGGGGAACTATCCACATTTAGTCGTTCTGGGAAGTGGGCTTGCTTTTGGGTACCTTGTGGTAAGATATCCATTGATTCTTGCGCACTTGTGTGATGAGCCAAAGGGTTTGAAAACTGGAATGTGCATGTCATTGTTGTATCTTCCATTTGCCATTGCAAATGCACTCACAGCTAAACTGAACGATGGAGTTCCTTTGGTTGATGAGAGCTTGGTTCTTCTTGGTTACTGTGCATTTACAGCGACGCTCTATCTTCACTTTGCAACGTCAGTCGTTCACGAGATCACAACAGCCTTGGGAATCTATTGCTTTAGGATAACTAGGAAGGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko00565 ko01100 ko01110 map00440 map00564 map00565 map01100 map01110

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

449

Amino Acids

49.98

Weight (kDa)

7.63

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13560 AT1G13560 AT1G13560 AT3G25585 AT3G25585 AT3G25585 AT3G25585 AT3G25585 AT3G25585
fragaria_vesca	FvH4_4g28600 FvH4_4g28600
malus_domestica	MD12G1007000.v1.1 MD16G1057500.v1.1
prunus_persica	Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.7G262100_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1 Prupe.8G087200_v2.0.a1
pyrus_communis	pycom03g00010 pycom12g00510 pycom16g05030
rosa_chinensis	RchiOBHm_Chr4g0436691
rosa_laevigata	RLG00000006503
rosa_multiflora	Rmu_sc0016627.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377770
rosa_rugosa	Rorug04G0295300 Rorug04G0295400
rosa_samantha	Rh4AG349800 Rh4BG358500 Rh4CG372900 Rh4DG352700
rosa_wichuraiana	Rw4G030600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	490
Acc16I	TGCGCA	1 cut(s)	1095
Acc65I	GGTACC	1 cut(s)	1062
AccB1I	GGYRCC	1 cut(s)	1062
AccBSI	CCGCTC	1 cut(s)	356
AciI	CCGC	2 cut(s)	308, 354
AclWI	GGATC	2 cut(s)	44, 240
AcsI	RAATTY	3 cut(s)	25, 31, 487
AdeI	CACNNNGTG	1 cut(s)	194
AfaI	GTAC	4 cut(s)	114, 221, 571, 1064
AfiI	CCNNNNNNNGG	2 cut(s)	465, 695
AgsI	TTSAA	5 cut(s)	16, 31, 880, 908, 1123
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AleI	CACNNNNGTG	1 cut(s)	1101
AlwI	GGATC	2 cut(s)	44, 240
AoxI	GGCC	1 cut(s)	558
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	3 cut(s)	25, 31, 487
AseI	ATTAAT	1 cut(s)	6
Asp718I	GGTACC	1 cut(s)	1062
AspLEI	GCGC	1 cut(s)	1096
AspS9I	GGNCC	2 cut(s)	686, 796
AsuHPI	GGTGA	3 cut(s)	369, 619, 990
AsuII	TTCGAA	2 cut(s)	139, 549
AvaII	GGWCC	2 cut(s)	686, 796
BaeGI	GKGCMC	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	1062
BanII	GRGCYC	1 cut(s)	760
BauI	CACGAG	1 cut(s)	1289
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	5 cut(s)	95, 166, 399, 458, 1190
BceAI	ACGGC	1 cut(s)	443
BfaI	CTAG	2 cut(s)	402, 1332
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	2 cut(s)	201, 308
BlsI	GCNGC	2 cut(s)	202, 309
BmcAI	AGTACT	1 cut(s)	571
Bme18I	GGWCC	2 cut(s)	686, 796
BmgT120I	GGNCC	2 cut(s)	686, 796
BmiI	GGNNCC	4 cut(s)	688, 797, 798, 1064
BmrI	ACTGGG	1 cut(s)	512
BmsI	GCATC	3 cut(s)	294, 445, 520
BmuI	ACTGGG	1 cut(s)	512
Bpu14I	TTCGAA	2 cut(s)	139, 549
Bsa29I	ATCGAT	1 cut(s)	48
BsaJI	CCNNGG	3 cut(s)	520, 690, 1305
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 695
Bse1I	ACTGG	4 cut(s)	390, 507, 942, 1132
Bse3DI	GCAATG	2 cut(s)	948, 1164
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	3 cut(s)	520, 690, 1305
BseGI	GGATG	3 cut(s)	309, 350, 861
BseLI	CCNNNNNNNGG	2 cut(s)	465, 695
BseMI	GCAATG	2 cut(s)	948, 1164
BseMII	CTCAG	3 cut(s)	107, 738, 779
BseNI	ACTGG	4 cut(s)	390, 507, 942, 1132
BseRI	GAGGAG	1 cut(s)	387
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	187
BshFI	GGCC	1 cut(s)	560
BshNI	GGYRCC	1 cut(s)	1062
BshVI	ATCGAT	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	782
BslI	CCNNNNNNNGG	2 cut(s)	465, 695
BsmFI	GGGAC	1 cut(s)	782
BsnI	GGCC	1 cut(s)	560
Bsp119I	TTCGAA	2 cut(s)	139, 549
Bsp1286I	GDGCHC	2 cut(s)	190, 760
Bsp143I	GATC	4 cut(s)	49, 232, 587, 1293
Bsp19I	CCATGG	1 cut(s)	520
BspACI	CCGC	2 cut(s)	308, 354
BspANI	GGCC	1 cut(s)	560
BspCNI	CTCAG	3 cut(s)	108, 739, 780
BspDI	ATCGAT	1 cut(s)	48
BspLI	GGNNCC	4 cut(s)	688, 797, 798, 1064
BspPI	GGATC	2 cut(s)	44, 240
BspT104I	TTCGAA	2 cut(s)	139, 549
BspT107I	GGYRCC	1 cut(s)	1062
BsrBI	CCGCTC	1 cut(s)	356
BsrDI	GCAATG	2 cut(s)	948, 1164
BsrI	ACTGG	4 cut(s)	390, 507, 942, 1132
BssECI	CCNNGG	3 cut(s)	520, 690, 1305
BssMI	GATC	4 cut(s)	49, 232, 587, 1293
BssSI	CACGAG	1 cut(s)	1289
BssT1I	CCWWGG	2 cut(s)	520, 1305
Bst2BI	CACGAG	1 cut(s)	1289
Bst4CI	ACNGT	2 cut(s)	224, 1241
Bst6I	CTCTTC	1 cut(s)	162
BstBI	TTCGAA	2 cut(s)	139, 549
BstC8I	GCNNGC	1 cut(s)	1053
BstDEI	CTNAG	4 cut(s)	116, 747, 788, 806
BstDSI	CCRYGG	2 cut(s)	520, 690
BstF5I	GGATG	3 cut(s)	309, 350, 861
BstHHI	GCGC	1 cut(s)	1096
BstKTI	GATC	4 cut(s)	52, 235, 590, 1296
BstMBI	GATC	4 cut(s)	49, 232, 587, 1293
BstMWI	GCNNNNNNNGC	4 cut(s)	551, 917, 1181, 1250
BstNSI	RCATGY	2 cut(s)	84, 1141
BstSLI	GKGCMC	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
Bsu15I	ATCGAT	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	560
BsuTUI	ATCGAT	1 cut(s)	48
BtgI	CCRYGG	2 cut(s)	520, 690
BtgZI	GCGATG	1 cut(s)	590
BtsCI	GGATG	3 cut(s)	309, 350, 861
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	5 cut(s)	103, 229, 243, 500, 935
Cac8I	GCNNGC	1 cut(s)	1053
CfoI	GCGC	1 cut(s)	1096
Cfr13I	GGNCC	2 cut(s)	686, 796
ClaI	ATCGAT	1 cut(s)	48
CseI	GACGC	1 cut(s)	1264
Csp6I	GTAC	4 cut(s)	113, 220, 570, 1063
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	8 cut(s)	81, 191, 316, 337, 422, 521, 984, 1138
CviQI	GTAC	4 cut(s)	113, 220, 570, 1063
DdeI	CTNAG	4 cut(s)	116, 747, 788, 806
DpnI	GATC	4 cut(s)	51, 234, 589, 1295
DpnII	GATC	4 cut(s)	49, 232, 587, 1293
DraIII	CACNNNGTG	1 cut(s)	194
DrdI	GACNNNNNNGTC	1 cut(s)	490
DseDI	GACNNNNNNGTC	1 cut(s)	490
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco130I	CCWWGG	2 cut(s)	520, 1305
Eco24I	GRGCYC	1 cut(s)	760
Eco32I	GATATC	1 cut(s)	1079
Eco47I	GGWCC	2 cut(s)	686, 796
EcoO109I	RGGNCCY	1 cut(s)	796
EcoRV	GATATC	1 cut(s)	1079
EcoT14I	CCWWGG	2 cut(s)	520, 1305
EcoT38I	GRGCYC	1 cut(s)	760
ErhI	CCWWGG	2 cut(s)	520, 1305
FaeI	CATG	8 cut(s)	84, 194, 319, 340, 425, 524, 987, 1141
FalI	AAGNNNNNCTT	2 cut(s)	577, 609
FaqI	GGGAC	1 cut(s)	782
FatI	CATG	8 cut(s)	80, 190, 315, 336, 421, 520, 983, 1137
Fnu4HI	GCNGC	2 cut(s)	201, 308
FokI	GGATG	3 cut(s)	316, 337, 848
FriOI	GRGCYC	1 cut(s)	760
Fsp4HI	GCNGC	2 cut(s)	201, 308
FspBI	CTAG	2 cut(s)	402, 1332
FspI	TGCGCA	1 cut(s)	1095
GlaI	GCGC	1 cut(s)	1095
GluI	GCNGC	2 cut(s)	201, 308
HaeIII	GGCC	1 cut(s)	560
HgaI	GACGC	1 cut(s)	1264
HhaI	GCGC	1 cut(s)	1096
Hin1II	CATG	8 cut(s)	84, 194, 319, 340, 425, 524, 987, 1141
Hin6I	GCGC	1 cut(s)	1094
HinP1I	GCGC	1 cut(s)	1094
HindIII	AAGCTT	2 cut(s)	155, 1341
HinfI	GANTC	6 cut(s)	16, 333, 389, 644, 1087, 1311
HphI	GGTGA	3 cut(s)	369, 619, 990
Hpy166II	GTNNAC	3 cut(s)	74, 500, 1288
Hpy188I	TCNGA	2 cut(s)	748, 789
Hpy188III	TCNNGA	1 cut(s)	1289
Hpy8I	GTNNAC	3 cut(s)	74, 500, 1288
Hpy99I	CGWCG	1 cut(s)	1258
HpyAV	CCTTC	2 cut(s)	680, 1330
HpyCH4III	ACNGT	2 cut(s)	224, 1241
HpyCH4IV	ACGT	1 cut(s)	1277
HpyCH4V	TGCA	7 cut(s)	208, 262, 1137, 1169, 1175, 1244, 1274
HpyF10VI	GCNNNNNNNGC	4 cut(s)	551, 917, 1181, 1250
HpyF3I	CTNAG	4 cut(s)	116, 747, 788, 806
HpySE526I	ACGT	1 cut(s)	1277
Hsp92II	CATG	8 cut(s)	84, 194, 319, 340, 425, 524, 987, 1141
HspAI	GCGC	1 cut(s)	1094
KflI	GGGWCCC	1 cut(s)	796
KpnI	GGTACC	1 cut(s)	1066
Kzo9I	GATC	4 cut(s)	49, 232, 587, 1293
LmnI	GCTCC	1 cut(s)	400
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	3 cut(s)	294, 445, 520
MaeI	CTAG	2 cut(s)	402, 1332
MaeII	ACGT	1 cut(s)	1277
MaeIII	GTNAC	3 cut(s)	989, 996, 1235
MalI	GATC	4 cut(s)	51, 234, 589, 1295
MbiI	CCGCTC	1 cut(s)	356
MboI	GATC	4 cut(s)	49, 232, 587, 1293
MboII	GAAGA	5 cut(s)	179, 597, 1145, 1220, 1256
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	2 cut(s)	190, 760
MluCI	AATT	6 cut(s)	25, 31, 54, 412, 487, 764
MlyI	GAGTC	1 cut(s)	653
MnlI	CCTC	4 cut(s)	111, 306, 408, 688
MseI	TTAA	5 cut(s)	6, 285, 326, 411, 681
MslI	CAYNNNNRTG	2 cut(s)	525, 1101
MspA1I	CMGCKG	2 cut(s)	617, 1004
MwoI	GCNNNNNNNGC	4 cut(s)	551, 917, 1181, 1250
NcoI	CCATGG	1 cut(s)	520
NdeII	GATC	4 cut(s)	49, 232, 587, 1293
NlaIII	CATG	8 cut(s)	84, 194, 319, 340, 425, 524, 987, 1141
NlaIV	GGNNCC	4 cut(s)	688, 797, 798, 1064
NmuCI	GTSAC	1 cut(s)	996
NsbI	TGCGCA	1 cut(s)	1095
NspI	RCATGY	2 cut(s)	84, 1141
NspV	TTCGAA	2 cut(s)	139, 549
OliI	CACNNNNGTG	1 cut(s)	1101
PfeI	GAWTC	5 cut(s)	16, 333, 389, 1087, 1311
PkrI	GCNGC	2 cut(s)	202, 309
PleI	GAGTC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	652
PpuMI	RGGWCCY	1 cut(s)	796
PshBI	ATTAAT	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	796
PspN4I	GGNNCC	4 cut(s)	688, 797, 798, 1064
PspPI	GGNCC	2 cut(s)	686, 796
PspPPI	RGGWCCY	1 cut(s)	796
PsuI	RGATCY	1 cut(s)	587
PvuII	CAGCTG	2 cut(s)	617, 1004
RsaI	GTAC	4 cut(s)	114, 221, 571, 1064
RsaNI	GTAC	4 cut(s)	113, 220, 570, 1063
RseI	CAYNNNNRTG	2 cut(s)	525, 1101
SaqAI	TTAA	5 cut(s)	6, 285, 326, 411, 681
SatI	GCNGC	2 cut(s)	201, 308
Sau3AI	GATC	4 cut(s)	49, 232, 587, 1293
Sau96I	GGNCC	2 cut(s)	686, 796
ScaI	AGTACT	1 cut(s)	571
SchI	GAGTC	1 cut(s)	653
SduI	GDGCHC	2 cut(s)	190, 760
SfaNI	GCATC	3 cut(s)	294, 445, 520
SfuI	TTCGAA	2 cut(s)	139, 549
SinI	GGWCC	2 cut(s)	686, 796
SmiMI	CAYNNNNRTG	2 cut(s)	525, 1101
Sse9I	AATT	6 cut(s)	25, 31, 54, 412, 487, 764
SsiI	CCGC	2 cut(s)	308, 354
SspMI	CTAG	2 cut(s)	402, 1332
StyI	CCWWGG	2 cut(s)	520, 1305
TaaI	ACNGT	2 cut(s)	224, 1241
TaiI	ACGT	1 cut(s)	1280
TaqI	TCGA	4 cut(s)	48, 139, 152, 549
TasI	AATT	6 cut(s)	25, 31, 54, 412, 487, 764
TatI	WGTACW	3 cut(s)	112, 219, 569
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	5 cut(s)	16, 333, 389, 1087, 1311
Tru1I	TTAA	5 cut(s)	6, 285, 326, 411, 681
Tru9I	TTAA	5 cut(s)	6, 285, 326, 411, 681
TscAI	CASTG	5 cut(s)	103, 229, 250, 507, 942
TseFI	GTSAC	1 cut(s)	996
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	996
TspDTI	ATGAA	3 cut(s)	32, 325, 884
TspGWI	ACGGA	2 cut(s)	496, 707
TspRI	CASTG	5 cut(s)	103, 229, 250, 507, 942
VpaK11BI	GGWCC	2 cut(s)	686, 796
VspI	ATTAAT	1 cut(s)	6
XapI	RAATTY	3 cut(s)	25, 31, 487
XceI	RCATGY	2 cut(s)	84, 1141
XspI	CTAG	2 cut(s)	402, 1332
ZrmI	AGTACT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.