FvH4_4g28600

Belongs to the CDP-alcohol phosphatidyltransferase class-I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001984
Physical Location & Seq
Reverse (-)
29193807 .. 29199740
5934 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28600.t1

Sequence Viewer

Length: 1026 bp
ATGATTACACTTACAGGGTTCATGTTCTTACTCACATCTGCACTGCTTGGCTACATATATTCACCAAGATTGGATTCAGCTCCTCCTAGATGGGTCAATTTTGCTCATGGATTGCTACTTTTCCTATACCAGACCTTTGATGCTGTTGATGGGAAGCAAGCCAGACGAACAAATTCCTCAAGTCCACTTGGGGAACTGTTTGACCATGGATGTGATGCACTTGCATGTGCGCTTGAAGCATTGGCTTTTGGGAGCACTGCAATGTGTGGAACAAACACTTTCTGGTTCTGGGTGATTTCAGCTGTTCCATTTTACTTTGCAACTTGGGAGCATTACTTTACCAATACCCTAATTCTTCCTGCCTTGAATGGGCCCACAGAGGGTCTCATGCTGATATATTTGAGTCATTGTTTCACAGCATTTGTTGGTTCTGAGTGGTGGGCTCAACCATTTGGCAAGTCTTTGCCTATTCTGAGTTGGATCCCTTTTCTAAGTGAAATTACGATGTCCAACGCTGTGTTGTTACTAATGATAGCTTTCGCTGTTCTCCCAACCGTAACATTCAATGTTATGAATGTTTATAAGGTCGTCCAGGCACGGAAAGGCAGCATGCTATTGGCACTGGCAATGCTTTATCCTTTTGCTGTTCTTTTGGGAGTAGTTTTGGCATGGGATTATTTGTCACCAGCAGGCATCATGAAGAACTATCCACATTTAGTCATAATGGGAACTGGGCTTGCTTTTGGGTACCTTGTGGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCAAAGGGCTTGAAAACTGGAATGTGCATGTCATTGTTGTACCTCCCATTTGCCATTGCAAATGCACTCACGGCTAGGCTGAATGATGGTGTTCCATTGGTTGATGACAGTTTGGTTCTCCTCGGTTACTGTGCATTTACAGCGGCACTCTATCTTCATTTTGCAACATCAGTCATTCATGAAATCACGACAGCCTTGGGAATCTATTGCTTCAGGATAACTAGGAAAGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko00565 ko01100 ko01110 map00440 map00564 map00565 map01100 map01110
Pfam Domains
Protein Families
CDP-OH_P_transf

Protein Analysis

342

Amino Acids

37.61

Weight (kDa)

6.43

Isoelectric Point (pI)

32.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDP-OH_P_transf PF01066 20 - 102 6.3e-08 CDP-alcohol phosphatidyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
Acc65I GGTACC 1 cut(s) 747
AccB1I GGYRCC 1 cut(s) 747
AciI CCGC 1 cut(s) 932
AclWI GGATC 2 cut(s) 475, 488
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 985
AfaI GTAC 2 cut(s) 749, 830
AfiI CCNNNNNNNGG 2 cut(s) 369, 380
AgsI TTSAA 4 cut(s) 236, 367, 565, 802
AjnI CCWGG 1 cut(s) 591
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AleI CACNNNNGTG 1 cut(s) 780
AluBI AGCT 4 cut(s) 80, 302, 536, 1022
AluI AGCT 4 cut(s) 80, 302, 536, 1022
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 2 cut(s) 475, 488
AoxI GGCC 1 cut(s) 371
ApaI GGGCCC 1 cut(s) 375
ApeKI GCWGC 1 cut(s) 606
ApoI RAATTY 1 cut(s) 172
Asp700I GAANNNNTTC 1 cut(s) 172
Asp718I GGTACC 1 cut(s) 747
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 2 cut(s) 371, 372
AsuHPI GGTGA 3 cut(s) 54, 304, 675
BaeGI GKGCMC 1 cut(s) 375
BamHI GGATCC 1 cut(s) 480
BanI GGYRCC 1 cut(s) 747
BanII GRGCYC 2 cut(s) 375, 445
Bbv12I GWGCWC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 618
BccI CCATC 3 cut(s) 84, 143, 869
BceAI ACGGC 1 cut(s) 876
BciT130I CCWGG 1 cut(s) 593
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 3 cut(s) 87, 864, 1011
BisI GCNGC 2 cut(s) 607, 933
BlsI GCNGC 2 cut(s) 608, 934
Bme1390I CCNGG 1 cut(s) 593
BmgT120I GGNCC 2 cut(s) 371, 372
BmiI GGNNCC 3 cut(s) 373, 482, 749
BmrFI CCNGG 1 cut(s) 593
BmrI ACTGGG 1 cut(s) 741
BmsI GCATC 3 cut(s) 130, 205, 702
BmuI ACTGGG 1 cut(s) 741
BpuEI CTTGAG 1 cut(s) 163
BsaI GGTCTC 1 cut(s) 389
BsaJI CCNNGG 3 cut(s) 205, 910, 984
Bsc4I CCNNNNNNNGG 2 cut(s) 369, 380
Bse1I ACTGG 3 cut(s) 627, 736, 811
Bse3DI GCAATG 3 cut(s) 267, 633, 843
BseBI CCWGG 1 cut(s) 593
BseDI CCNNGG 3 cut(s) 205, 910, 984
BseGI GGATG 1 cut(s) 215
BseLI CCNNNNNNNGG 2 cut(s) 369, 380
BseMI GCAATG 3 cut(s) 267, 633, 843
BseMII CTCAG 2 cut(s) 423, 464
BseNI ACTGG 3 cut(s) 627, 736, 811
BseRI GAGGAG 2 cut(s) 72, 899
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 1 cut(s) 618
BsgI GTGCAG 1 cut(s) 24
BshFI GGCC 1 cut(s) 373
BshNI GGYRCC 1 cut(s) 747
BsiHKAI GWGCWC 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 369, 380
BsmAI GTCTC 1 cut(s) 389
BsnI GGCC 1 cut(s) 373
Bso31I GGTCTC 1 cut(s) 389
Bsp120I GGGCCC 1 cut(s) 371
Bsp1286I GDGCHC 3 cut(s) 257, 375, 445
Bsp143I GATC 1 cut(s) 480
Bsp19I CCATGG 1 cut(s) 205
BspACI CCGC 1 cut(s) 932
BspANI GGCC 1 cut(s) 373
BspCNI CTCAG 2 cut(s) 424, 465
BspHI TCATGA 2 cut(s) 696, 967
BspLI GGNNCC 3 cut(s) 373, 482, 749
BspPI GGATC 2 cut(s) 475, 488
BspT107I GGYRCC 1 cut(s) 747
BspTNI GGTCTC 1 cut(s) 389
BsrDI GCAATG 3 cut(s) 267, 633, 843
BsrI ACTGG 3 cut(s) 627, 736, 811
BssECI CCNNGG 3 cut(s) 205, 910, 984
BssMI GATC 1 cut(s) 480
BssT1I CCWWGG 2 cut(s) 205, 984
Bst2UI CCWGG 1 cut(s) 593
Bst4CI ACNGT 4 cut(s) 198, 556, 899, 920
BstC8I GCNNGC 4 cut(s) 159, 611, 691, 738
BstDEI CTNAG 3 cut(s) 432, 473, 491
BstDSI CCRYGG 1 cut(s) 205
BstF5I GGATG 1 cut(s) 215
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 1 cut(s) 483
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 1 cut(s) 480
BstMWI GCNNNNNNNGC 3 cut(s) 236, 860, 929
BstNI CCWGG 1 cut(s) 593
BstNSI RCATGY 3 cut(s) 228, 613, 820
BstSCI CCNGG 1 cut(s) 591
BstSLI GKGCMC 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 618
BstX2I RGATCY 1 cut(s) 480
BstYI RGATCY 1 cut(s) 480
BsuRI GGCC 1 cut(s) 373
BtgI CCRYGG 1 cut(s) 205
BtsCI GGATG 1 cut(s) 215
BtsI GCAGTG 2 cut(s) 41, 255
BtsIMutI CAGTG 3 cut(s) 41, 255, 620
Cac8I GCNNGC 4 cut(s) 159, 611, 691, 738
CciI TCATGA 2 cut(s) 696, 967
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 2 cut(s) 371, 372
Csp6I GTAC 2 cut(s) 748, 829
CviQI GTAC 2 cut(s) 748, 829
DdeI CTNAG 3 cut(s) 432, 473, 491
DpnI GATC 1 cut(s) 482
DpnII GATC 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 205, 984
Eco24I GRGCYC 2 cut(s) 375, 445
Eco31I GGTCTC 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 985
EcoRII CCWGG 1 cut(s) 591
EcoT14I CCWWGG 2 cut(s) 205, 984
EcoT38I GRGCYC 2 cut(s) 375, 445
ErhI CCWWGG 2 cut(s) 205, 984
Fnu4HI GCNGC 2 cut(s) 607, 933
FokI GGATG 1 cut(s) 222
FriOI GRGCYC 2 cut(s) 375, 445
Fsp4HI GCNGC 2 cut(s) 607, 933
FspBI CTAG 3 cut(s) 87, 864, 1011
GlaI GCGC 1 cut(s) 231
GluI GCNGC 2 cut(s) 607, 933
HaeIII GGCC 1 cut(s) 373
HhaI GCGC 1 cut(s) 232
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HindIII AAGCTT 1 cut(s) 1020
HinfI GANTC 4 cut(s) 74, 403, 766, 990
HphI GGTGA 3 cut(s) 54, 304, 675
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 2 cut(s) 433, 474
Hpy188III TCNNGA 4 cut(s) 697, 968, 976, 1003
Hpy8I GTNNAC 1 cut(s) 185
HpyCH4III ACNGT 4 cut(s) 198, 556, 899, 920
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 860, 929
HpyF3I CTNAG 3 cut(s) 432, 473, 491
HspAI GCGC 1 cut(s) 230
KpnI GGTACC 1 cut(s) 751
Kzo9I GATC 1 cut(s) 480
LmnI GCTCC 3 cut(s) 85, 252, 328
Lsp1109I GCAGC 1 cut(s) 618
LweI GCATC 3 cut(s) 130, 205, 702
MaeI CTAG 3 cut(s) 87, 864, 1011
MaeIII GTNAC 4 cut(s) 522, 556, 681, 914
MalI GATC 1 cut(s) 482
MboI GATC 1 cut(s) 480
MboII GAAGA 4 cut(s) 347, 712, 771, 935
MflI RGATCY 1 cut(s) 480
MhlI GDGCHC 3 cut(s) 257, 375, 445
MluCI AATT 4 cut(s) 97, 172, 351, 498
MlyI GAGTC 1 cut(s) 412
MmeI TCCRAC 2 cut(s) 458, 534
MnlI CCTC 5 cut(s) 93, 187, 373, 842, 920
MroXI GAANNNNTTC 1 cut(s) 172
MslI CAYNNNNRTG 4 cut(s) 210, 223, 260, 780
MspA1I CMGCKG 2 cut(s) 302, 932
MspR9I CCNGG 1 cut(s) 593
MvaI CCWGG 1 cut(s) 593
MwoI GCNNNNNNNGC 3 cut(s) 236, 860, 929
NcoI CCATGG 1 cut(s) 205
NdeII GATC 1 cut(s) 480
NlaIV GGNNCC 3 cut(s) 373, 482, 749
NmuCI GTSAC 1 cut(s) 681
NspI RCATGY 3 cut(s) 228, 613, 820
OliI CACNNNNGTG 1 cut(s) 780
PaeI GCATGC 1 cut(s) 613
PagI TCATGA 2 cut(s) 696, 967
PdmI GAANNNNTTC 1 cut(s) 172
PfeI GAWTC 3 cut(s) 74, 766, 990
PkrI GCNGC 2 cut(s) 608, 934
PleI GAGTC 1 cut(s) 411
PpsI GAGTC 1 cut(s) 411
PsiI TTATAA 1 cut(s) 582
Psp6I CCWGG 1 cut(s) 591
PspGI CCWGG 1 cut(s) 591
PspN4I GGNNCC 3 cut(s) 373, 482, 749
PspOMI GGGCCC 1 cut(s) 371
PspPI GGNCC 2 cut(s) 371, 372
PsuI RGATCY 1 cut(s) 480
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 2 cut(s) 749, 830
RsaNI GTAC 2 cut(s) 748, 829
RseI CAYNNNNRTG 4 cut(s) 210, 223, 260, 780
SatI GCNGC 2 cut(s) 607, 933
Sau3AI GATC 1 cut(s) 480
Sau96I GGNCC 2 cut(s) 371, 372
SchI GAGTC 1 cut(s) 412
ScrFI CCNGG 1 cut(s) 593
SduI GDGCHC 3 cut(s) 257, 375, 445
SetI ASST 8 cut(s) 82, 137, 304, 538, 588, 753, 834, 1024
SfaNI GCATC 3 cut(s) 130, 205, 702
SmiMI CAYNNNNRTG 4 cut(s) 210, 223, 260, 780
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
SphI GCATGC 1 cut(s) 613
Sse9I AATT 4 cut(s) 97, 172, 351, 498
SsiI CCGC 1 cut(s) 932
SspMI CTAG 3 cut(s) 87, 864, 1011
StyD4I CCNGG 1 cut(s) 591
StyI CCWWGG 2 cut(s) 205, 984
TaaI ACNGT 4 cut(s) 198, 556, 899, 920
TasI AATT 4 cut(s) 97, 172, 351, 498
TauI GCSGC 1 cut(s) 935
TfiI GAWTC 3 cut(s) 74, 766, 990
TscAI CASTG 3 cut(s) 48, 262, 627
TseFI GTSAC 1 cut(s) 681
TseI GCWGC 1 cut(s) 606
Tsp45I GTSAC 1 cut(s) 681
TspDTI ATGAA 6 cut(s) 10, 587, 713, 935, 956, 984
TspGWI ACGGA 1 cut(s) 613
TspRI CASTG 3 cut(s) 48, 262, 627
XapI RAATTY 1 cut(s) 172
XceI RCATGY 3 cut(s) 228, 613, 820
XmnI GAANNNNTTC 1 cut(s) 172
XspI CTAG 3 cut(s) 87, 864, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.