Prupe.7G262100_v2.0.a1

Belongs to the CDP-alcohol phosphatidyltransferase class-I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001984
Physical Location & Seq
Forward (+)
21765620 .. 21772697
7078 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G262100.6

Sequence Viewer

Length: 1170 bp
ATGGGGTACATTGGGGCACATGGTGTGGCTGCTTTGCATAAATACAAGTATAGTGGTGTGGATCACTCGTACACTGCAAAATATGTATTGCAACCCTTTTGGAGTCGTTTTGTTAAAATATTTCCCCTTTGGATGCCGCCCAATATGATAACACTAACTGGATTCATGTTCTTGCTCACATCTGCACTGCTTGGATATATATATTCACCAAGATTAGATTCAGCTCCTCCTAGATGGGTTAATTTTGCTCATGGATTGCTACTTTTCTTATATCAGACCTTTGATGCTGTTGATGGGAAGCAAGCAAGACGGACAAATTCCTCAAGTCCACTGGGGGAACTTTTTGACCACGGTTGTGATGCCCTTGCATGTGCGTTTGAAGGATTGGCTTTTGGGAGTACTGCGATGTGTGGAAGAACTACCTTCTGGTTTTGGGTGATTTCAGCTGTTCCTTTTTATTGTGCAACATGGGAGCATTACTTTACCAATACCCTGATCCTTCCTGCCGTTAATGGGCCCACAGAAGGTCTAATGCTGATATATTTCGCCCATTTTTTCACAGCTATTGTTGGTTCTGAGTGGTGGGCTCAACCATTTGGAAAGTCTCTGCCTTTTCTTAGTTGGGTCCCATTTATTCACGAAATTACAACATACAAAGCTGTGTTGTTTCTAATGGTAGCTTTTGCTGTTATCCCAACGCTCACGTTCAATGTGTGCAATGTTTATAAGGTTGTTCAGACAAAGAAAGGAAGCATGCTATTGGCACTGGCAATGCTTTACCCTTTTGCTGTTCTTTTGGGAGGAGTTTTGGCATGGGGTTACTTGTCACCAGCTGACATTATGGGGAACTATCCACATTTAGTCGTAGTGGGAACTGGACTTGCTTTTGGGTACCTTGTGGGAAGACTGATTCTTGCGCACTTGTGTGATGAGCCAAAGGGTTTGAAAACTGGAATGTGCATGTCACTGTTGTATCTCCCATTTGCCATTGCAAATGCACTCACGGCTAGATTGAATGATGGAGTTCCATTGGTTGACGAGAGCTTGGTTCTTCTTGGTTACTGTGCATTTACAGCGACACTCTATCTTCACTATGCAACTTCAGTTGTTCATGAAATCACGACAGCCTTGGGAATTTATTGCTTTAGGATAACTAGGAAGGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko00565 ko01100 ko01110 map00440 map00564 map00565 map01100 map01110
Pfam Domains
Protein Families
CDP-OH_P_transf

Protein Analysis

390

Amino Acids

43.2

Weight (kDa)

8.28

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 726
Acc16I TGCGCA 1 cut(s) 918
Acc65I GGTACC 1 cut(s) 891
AccB1I GGYRCC 1 cut(s) 891
AciI CCGC 1 cut(s) 137
AclWI GGATC 2 cut(s) 69, 490
AcsI RAATTY 2 cut(s) 316, 1134
AcuI CTGAAG 1 cut(s) 1086
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 4 cut(s) 8, 71, 400, 893
AfiI CCNNNNNNNGG 2 cut(s) 513, 524
AgsI TTSAA 4 cut(s) 380, 709, 946, 1015
AjuI GAANNNNNNNTTGG 2 cut(s) 202, 234
AleI CACNNNNGTG 2 cut(s) 354, 924
AluBI AGCT 8 cut(s) 224, 446, 563, 659, 680, 833, 1044, 1166
AluI AGCT 8 cut(s) 224, 446, 563, 659, 680, 833, 1044, 1166
Alw26I GTCTC 1 cut(s) 609
AlwI GGATC 2 cut(s) 69, 490
AoxI GGCC 1 cut(s) 515
ApaI GGGCCC 1 cut(s) 519
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 2 cut(s) 316, 1134
Asp718I GGTACC 1 cut(s) 891
AspLEI GCGC 1 cut(s) 919
AspS9I GGNCC 3 cut(s) 515, 516, 625
AsuHPI GGTGA 3 cut(s) 198, 448, 819
AvaII GGWCC 1 cut(s) 625
BaeGI GKGCMC 2 cut(s) 19, 519
BaeI ACNNNNGTAYC 2 cut(s) 956, 989
BanI GGYRCC 1 cut(s) 891
BanII GRGCYC 2 cut(s) 519, 589
BbsI GAAGAC 1 cut(s) 910
BbvI GCAGC 1 cut(s) 16
BccI CCATC 3 cut(s) 228, 287, 1013
BceAI ACGGC 2 cut(s) 491, 1020
BcoDI GTCTC 1 cut(s) 609
BfaI CTAG 3 cut(s) 231, 1008, 1155
BisI GCNGC 2 cut(s) 30, 137
BlsI GCNGC 2 cut(s) 31, 138
BmcAI AGTACT 1 cut(s) 400
Bme18I GGWCC 1 cut(s) 625
BmgT120I GGNCC 3 cut(s) 515, 516, 625
BmiI GGNNCC 4 cut(s) 517, 626, 627, 893
BmrI ACTGGG 1 cut(s) 341
BmsI GCATC 3 cut(s) 123, 274, 349
BmuI ACTGGG 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 910
BpuEI CTTGAG 1 cut(s) 307
BsaJI CCNNGG 2 cut(s) 349, 1128
Bsc4I CCNNNNNNNGG 2 cut(s) 513, 524
Bse1I ACTGG 5 cut(s) 163, 336, 771, 880, 955
Bse3DI GCAATG 3 cut(s) 724, 777, 987
BseDI CCNNGG 2 cut(s) 349, 1128
BseGI GGATG 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 513, 524
BseMI GCAATG 3 cut(s) 724, 777, 987
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 5 cut(s) 163, 336, 771, 880, 955
BseRI GAGGAG 2 cut(s) 216, 816
BseSI GKGCMC 2 cut(s) 19, 519
BseXI GCAGC 1 cut(s) 16
BsgI GTGCAG 1 cut(s) 168
BshFI GGCC 1 cut(s) 517
BshNI GGYRCC 1 cut(s) 891
BslFI GGGAC 1 cut(s) 611
BslI CCNNNNNNNGG 2 cut(s) 513, 524
BsmAI GTCTC 1 cut(s) 609
BsmFI GGGAC 1 cut(s) 611
BsnI GGCC 1 cut(s) 517
Bsp120I GGGCCC 1 cut(s) 515
Bsp1286I GDGCHC 3 cut(s) 19, 519, 589
Bsp143I GATC 2 cut(s) 61, 495
BspACI CCGC 1 cut(s) 137
BspANI GGCC 1 cut(s) 517
BspCNI CTCAG 1 cut(s) 568
BspHI TCATGA 1 cut(s) 1111
BspLI GGNNCC 4 cut(s) 517, 626, 627, 893
BspPI GGATC 2 cut(s) 69, 490
BspT107I GGYRCC 1 cut(s) 891
BsrDI GCAATG 3 cut(s) 724, 777, 987
BsrI ACTGG 5 cut(s) 163, 336, 771, 880, 955
BssECI CCNNGG 2 cut(s) 349, 1128
BssMI GATC 2 cut(s) 61, 495
BssT1I CCWWGG 1 cut(s) 1128
Bst4CI ACNGT 3 cut(s) 353, 969, 1064
BstC8I GCNNGC 2 cut(s) 303, 755
BstDEI CTNAG 2 cut(s) 576, 617
BstDSI CCRYGG 1 cut(s) 349
BstF5I GGATG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 919
BstKTI GATC 2 cut(s) 64, 498
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 2 cut(s) 61, 495
BstMWI GCNNNNNNNGC 2 cut(s) 1004, 1073
BstNSI RCATGY 3 cut(s) 372, 757, 964
BstSLI GKGCMC 2 cut(s) 19, 519
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 910
BsuRI GGCC 1 cut(s) 517
BtgI CCRYGG 1 cut(s) 349
BtgZI GCGATG 1 cut(s) 419
BtsCI GGATG 1 cut(s) 138
BtsI GCAGTG 2 cut(s) 72, 185
BtsIMutI CAGTG 5 cut(s) 72, 185, 329, 764, 965
Cac8I GCNNGC 2 cut(s) 303, 755
CciI TCATGA 1 cut(s) 1111
CfoI GCGC 1 cut(s) 919
Cfr13I GGNCC 3 cut(s) 515, 516, 625
Csp6I GTAC 4 cut(s) 7, 70, 399, 892
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 9 cut(s) 20, 166, 251, 369, 468, 754, 813, 961, 1112
CviQI GTAC 4 cut(s) 7, 70, 399, 892
DdeI CTNAG 2 cut(s) 576, 617
DpnI GATC 2 cut(s) 63, 497
DpnII GATC 2 cut(s) 61, 495
DraIII CACNNNGTG 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 1128
Eco24I GRGCYC 2 cut(s) 519, 589
Eco47I GGWCC 1 cut(s) 625
Eco57I CTGAAG 1 cut(s) 1086
EcoO109I RGGNCCY 1 cut(s) 625
EcoT14I CCWWGG 1 cut(s) 1128
EcoT38I GRGCYC 2 cut(s) 519, 589
ErhI CCWWGG 1 cut(s) 1128
FaeI CATG 9 cut(s) 23, 169, 254, 372, 471, 757, 816, 964, 1115
FaqI GGGAC 1 cut(s) 611
FatI CATG 9 cut(s) 19, 165, 250, 368, 467, 753, 812, 960, 1111
Fnu4HI GCNGC 2 cut(s) 30, 137
FokI GGATG 1 cut(s) 145
FriOI GRGCYC 2 cut(s) 519, 589
Fsp4HI GCNGC 2 cut(s) 30, 137
FspBI CTAG 3 cut(s) 231, 1008, 1155
FspI TGCGCA 1 cut(s) 918
GlaI GCGC 1 cut(s) 918
GluI GCNGC 2 cut(s) 30, 137
HaeIII GGCC 1 cut(s) 517
HhaI GCGC 1 cut(s) 919
Hin1II CATG 9 cut(s) 23, 169, 254, 372, 471, 757, 816, 964, 1115
Hin6I GCGC 1 cut(s) 917
HinP1I GCGC 1 cut(s) 917
HincII GTYRAC 1 cut(s) 1036
HindII GTYRAC 1 cut(s) 1036
HindIII AAGCTT 1 cut(s) 1164
HinfI GANTC 4 cut(s) 103, 162, 218, 910
HphI GGTGA 3 cut(s) 198, 448, 819
Hpy166II GTNNAC 3 cut(s) 72, 329, 1036
Hpy188I TCNGA 3 cut(s) 276, 577, 738
Hpy188III TCNNGA 3 cut(s) 638, 1112, 1120
Hpy8I GTNNAC 3 cut(s) 72, 329, 1036
HpyAV CCTTC 5 cut(s) 374, 433, 509, 518, 1153
HpyCH4III ACNGT 3 cut(s) 353, 969, 1064
HpyCH4IV ACGT 1 cut(s) 704
HpyF10VI GCNNNNNNNGC 2 cut(s) 1004, 1073
HpyF3I CTNAG 2 cut(s) 576, 617
HpySE526I ACGT 1 cut(s) 704
Hsp92II CATG 9 cut(s) 23, 169, 254, 372, 471, 757, 816, 964, 1115
HspAI GCGC 1 cut(s) 917
KflI GGGWCCC 1 cut(s) 625
KpnI GGTACC 1 cut(s) 895
Kzo9I GATC 2 cut(s) 61, 495
LmnI GCTCC 2 cut(s) 229, 472
LpnPI CCDG 9 cut(s) 144, 317, 412, 506, 516, 752, 843, 861, 936
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 3 cut(s) 123, 274, 349
MaeI CTAG 3 cut(s) 231, 1008, 1155
MaeII ACGT 1 cut(s) 704
MaeIII GTNAC 4 cut(s) 818, 825, 963, 1058
MalI GATC 2 cut(s) 63, 497
MboI GATC 2 cut(s) 61, 495
MboII GAAGA 4 cut(s) 426, 915, 1043, 1079
MhlI GDGCHC 3 cut(s) 19, 519, 589
MluCI AATT 4 cut(s) 241, 316, 642, 1134
MlyI GAGTC 1 cut(s) 112
MnlI CCTC 3 cut(s) 237, 331, 794
MseI TTAA 3 cut(s) 114, 240, 510
MslI CAYNNNNRTG 2 cut(s) 354, 924
MspA1I CMGCKG 2 cut(s) 446, 833
MwoI GCNNNNNNNGC 2 cut(s) 1004, 1073
NdeII GATC 2 cut(s) 61, 495
NlaIII CATG 9 cut(s) 23, 169, 254, 372, 471, 757, 816, 964, 1115
NlaIV GGNNCC 4 cut(s) 517, 626, 627, 893
NmuCI GTSAC 2 cut(s) 825, 963
NsbI TGCGCA 1 cut(s) 918
NspI RCATGY 3 cut(s) 372, 757, 964
OliI CACNNNNGTG 2 cut(s) 354, 924
PaeI GCATGC 1 cut(s) 757
PagI TCATGA 1 cut(s) 1111
PfeI GAWTC 3 cut(s) 162, 218, 910
PkrI GCNGC 2 cut(s) 31, 138
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
PpuMI RGGWCCY 1 cut(s) 625
PsiI TTATAA 1 cut(s) 726
Psp5II RGGWCCY 1 cut(s) 625
PspN4I GGNNCC 4 cut(s) 517, 626, 627, 893
PspOMI GGGCCC 1 cut(s) 515
PspPI GGNCC 3 cut(s) 515, 516, 625
PspPPI RGGWCCY 1 cut(s) 625
PvuII CAGCTG 2 cut(s) 446, 833
RsaI GTAC 4 cut(s) 8, 71, 400, 893
RsaNI GTAC 4 cut(s) 7, 70, 399, 892
RseI CAYNNNNRTG 2 cut(s) 354, 924
SaqAI TTAA 3 cut(s) 114, 240, 510
SatI GCNGC 2 cut(s) 30, 137
Sau3AI GATC 2 cut(s) 61, 495
Sau96I GGNCC 3 cut(s) 515, 516, 625
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 1 cut(s) 112
SduI GDGCHC 3 cut(s) 19, 519, 589
SfaNI GCATC 3 cut(s) 123, 274, 349
SinI GGWCC 1 cut(s) 625
SmiMI CAYNNNNRTG 2 cut(s) 354, 924
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
SphI GCATGC 1 cut(s) 757
Sse9I AATT 4 cut(s) 241, 316, 642, 1134
SsiI CCGC 1 cut(s) 137
SspI AATATT 1 cut(s) 120
SspMI CTAG 3 cut(s) 231, 1008, 1155
StyI CCWWGG 1 cut(s) 1128
TaaI ACNGT 3 cut(s) 353, 969, 1064
TaiI ACGT 1 cut(s) 707
TasI AATT 4 cut(s) 241, 316, 642, 1134
TatI WGTACW 1 cut(s) 398
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 3 cut(s) 162, 218, 910
Tru1I TTAA 3 cut(s) 114, 240, 510
Tru9I TTAA 3 cut(s) 114, 240, 510
TscAI CASTG 5 cut(s) 79, 192, 336, 771, 972
TseFI GTSAC 2 cut(s) 825, 963
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 2 cut(s) 825, 963
TspDTI ATGAA 3 cut(s) 154, 1100, 1128
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 5 cut(s) 79, 192, 336, 771, 972
VpaK11BI GGWCC 1 cut(s) 625
XapI RAATTY 2 cut(s) 316, 1134
XceI RCATGY 3 cut(s) 372, 757, 964
XspI CTAG 3 cut(s) 231, 1008, 1155
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.