Prupe.8G087200_v2.0.a1

Belongs to the CDP-alcohol phosphatidyltransferase class-I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0001984
Physical Location & Seq
Reverse (-)
12012268 .. 12018303
6036 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G087200.4

Sequence Viewer

Length: 1263 bp
ATGGGGTACATTGGGGCACATGGTGGGGTTGCTTTGCATAAATATAAGTATAGTGATGTGGATCACTCCTACACTGCGAAATATGTATTGCAACCCTTTTGGTGTCGCTTCGTTAAAATATTTCCCCTTTGGATGCCAGCTGGTTTAGGGTTATTTTTCCTGCCATTTACTAACTTTTTCTTTTTCTTTGGTCTATGTGCGCGTTTGGGTGTCTGTGTTCTTTTTCAGGCCCAACATGGTATAATGACATTTACTCCCAATTATATAACACTAACGGGATTCATGTTCTTGCTCACATCTGCGCTGCTTGGATATATATATTCACCAAGATTGGATTCAGCTCCTCCTAGATGGGTTAATTTCGCTCATGGATTGCTACTTTTCTTATATCAGACGTTTGATGCTGTTGATGGGAAGCAAGCAAGACGGACAGATTCCTCAAGTCCGCTGGGGGAACTTTTTGACCATGGTTGTGATGCCCTTGCATGTGCGTTTGAAGGATTGGCTTTTGGGAGTACTGCAATGTGTGGAAGAACTACCTTCTGGTTTTGGGTGATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAGCATTACTTTACCAATACCCTGATCCTTCCTGCCGTTAATGGGCCCACAGAGGGTCTAATGCTGATATATTTGTCCCATTTTTTCACAGCTATTGTTGGTTCTGAGTGGTGGGCTCAACAATTTGGAAAGTCTCTGCCTTTTCTTAGTTGGGTCCCATTTATTCATGAAATTACAACATACAAAGCTGTGTTGTTTCTAATGGTAGCTTTTGCTGTTATCCCAACGGTCACGTTCAATGTGTGCAATGTTTATAAGGTTGTTCAGGCAAGGAAAGCAAGCATGCTATTGGCACTGGCAATGGAGTTTTGGCATGGTATGGGATACTTGTCACCAGCTGACATTATGGGGAACTATCCACATTTAGTCATAGTGGGAACTGGACTTGCTTTTGGGTACCTTGTGGGAAGTATGATTCTTGCGCACTTGTGTGATGAGCCAAAGGGTTTGAAAACTGGAATGTGCATGTCATTGTTGTATCTCCCATTTGCCATTGCAAATGCACTCACAGCTAGATTGAATGACGGAGTTCCATCGGTTGACGAGAGCTTGGTTCTTCTTGGTTACTGTGCATTTACAGGGACACTCTATCTTCACTTTGCAACTTCAGTCGTTCATGAAATCACGACAGCCTTGGGAATTTTTTGCTTTAGGATAACTAGGAAGGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko00565 ko01100 ko01110 map00440 map00564 map00565 map01100 map01110
Pfam Domains
Protein Families
CDP-OH_P_transf

Protein Analysis

421

Amino Acids

46.84

Weight (kDa)

7.19

Isoelectric Point (pI)

29.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 843
Acc16I TGCGCA 1 cut(s) 1011
Acc65I GGTACC 1 cut(s) 984
AccB1I GGYRCC 1 cut(s) 984
AccII CGCG 1 cut(s) 202
AciI CCGC 1 cut(s) 446
AclWI GGATC 2 cut(s) 69, 607
AcsI RAATTY 1 cut(s) 1227
AcuI CTGAAG 1 cut(s) 1179
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 3 cut(s) 8, 517, 986
AfiI CCNNNNNNNGG 2 cut(s) 630, 641
AgsI TTSAA 4 cut(s) 497, 826, 1039, 1108
AjuI GAANNNNNNNTTGG 2 cut(s) 319, 351
AleI CACNNNNGTG 1 cut(s) 1017
Alw26I GTCTC 1 cut(s) 726
AlwI GGATC 2 cut(s) 69, 607
AoxI GGCC 2 cut(s) 228, 632
ApaI GGGCCC 1 cut(s) 636
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 1 cut(s) 1227
Asp718I GGTACC 1 cut(s) 984
AspLEI GCGC 3 cut(s) 202, 304, 1012
AspS9I GGNCC 4 cut(s) 229, 632, 633, 742
AsuHPI GGTGA 3 cut(s) 315, 565, 912
AvaII GGWCC 1 cut(s) 742
BaeGI GKGCMC 2 cut(s) 19, 636
BanI GGYRCC 1 cut(s) 984
BanII GRGCYC 2 cut(s) 636, 706
BbvI GCAGC 1 cut(s) 291
BccI CCATC 3 cut(s) 345, 404, 1129
BceAI ACGGC 1 cut(s) 608
BciVI GTATCC 1 cut(s) 905
BcoDI GTCTC 1 cut(s) 726
BfaI CTAG 3 cut(s) 348, 1101, 1248
BfuI GTATCC 1 cut(s) 905
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
BmcAI AGTACT 1 cut(s) 517
Bme18I GGWCC 1 cut(s) 742
BmgT120I GGNCC 4 cut(s) 229, 632, 633, 742
BmiI GGNNCC 4 cut(s) 634, 743, 744, 986
BmsI GCATC 3 cut(s) 123, 391, 466
BpuEI CTTGAG 1 cut(s) 424
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 466, 1221
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 2 cut(s) 630, 641
Bse1I ACTGG 3 cut(s) 888, 973, 1048
Bse3DI GCAATG 4 cut(s) 528, 841, 894, 1080
Bse8I GATNNNNATC 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 466, 1221
BseGI GGATG 1 cut(s) 138
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 630, 641
BseMI GCAATG 4 cut(s) 528, 841, 894, 1080
BseMII CTCAG 1 cut(s) 684
BseNI ACTGG 3 cut(s) 888, 973, 1048
BseRI GAGGAG 1 cut(s) 333
BseSI GKGCMC 2 cut(s) 19, 636
BseXI GCAGC 1 cut(s) 291
BseYI CCCAGC 1 cut(s) 448
Bsh1236I CGCG 1 cut(s) 202
BshFI GGCC 2 cut(s) 230, 634
BshNI GGYRCC 1 cut(s) 984
BslFI GGGAC 3 cut(s) 649, 728, 1183
BslI CCNNNNNNNGG 2 cut(s) 630, 641
BsmAI GTCTC 1 cut(s) 726
BsmFI GGGAC 3 cut(s) 649, 728, 1183
BsnI GGCC 2 cut(s) 230, 634
Bsp120I GGGCCC 1 cut(s) 632
Bsp1286I GDGCHC 3 cut(s) 19, 636, 706
Bsp143I GATC 2 cut(s) 61, 612
Bsp19I CCATGG 1 cut(s) 466
BspACI CCGC 1 cut(s) 446
BspANI GGCC 2 cut(s) 230, 634
BspCNI CTCAG 1 cut(s) 685
BspFNI CGCG 1 cut(s) 202
BspHI TCATGA 2 cut(s) 754, 1204
BspLI GGNNCC 4 cut(s) 634, 743, 744, 986
BspPI GGATC 2 cut(s) 69, 607
BspT107I GGYRCC 1 cut(s) 984
BsrDI GCAATG 4 cut(s) 528, 841, 894, 1080
BsrI ACTGG 3 cut(s) 888, 973, 1048
BssECI CCNNGG 2 cut(s) 466, 1221
BssMI GATC 2 cut(s) 61, 612
BssT1I CCWWGG 2 cut(s) 466, 1221
Bst4CI ACNGT 2 cut(s) 817, 1157
BstC8I GCNNGC 4 cut(s) 138, 420, 868, 872
BstDEI CTNAG 2 cut(s) 693, 734
BstDSI CCRYGG 1 cut(s) 466
BstF5I GGATG 1 cut(s) 138
BstFNI CGCG 1 cut(s) 202
BstHHI GCGC 3 cut(s) 202, 304, 1012
BstKTI GATC 2 cut(s) 64, 615
BstMAI GTCTC 1 cut(s) 726
BstMBI GATC 2 cut(s) 61, 612
BstMWI GCNNNNNNNGC 2 cut(s) 863, 1097
BstNSI RCATGY 3 cut(s) 489, 874, 1057
BstSLI GKGCMC 2 cut(s) 19, 636
BstUI CGCG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 291
BsuI GTATCC 1 cut(s) 905
BsuRI GGCC 2 cut(s) 230, 634
BtgI CCRYGG 1 cut(s) 466
BtsCI GGATG 1 cut(s) 138
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 72, 881
Cac8I GCNNGC 4 cut(s) 138, 420, 868, 872
CciI TCATGA 2 cut(s) 754, 1204
CfoI GCGC 3 cut(s) 202, 304, 1012
Cfr13I GGNCC 4 cut(s) 229, 632, 633, 742
Csp6I GTAC 3 cut(s) 7, 516, 985
CviQI GTAC 3 cut(s) 7, 516, 985
DdeI CTNAG 2 cut(s) 693, 734
DpnI GATC 2 cut(s) 63, 614
DpnII GATC 2 cut(s) 61, 612
DraIII CACNNNGTG 1 cut(s) 23
Eco130I CCWWGG 2 cut(s) 466, 1221
Eco24I GRGCYC 2 cut(s) 636, 706
Eco47I GGWCC 1 cut(s) 742
Eco57I CTGAAG 1 cut(s) 1179
EcoO109I RGGNCCY 1 cut(s) 742
EcoT14I CCWWGG 2 cut(s) 466, 1221
EcoT38I GRGCYC 2 cut(s) 636, 706
ErhI CCWWGG 2 cut(s) 466, 1221
FaqI GGGAC 3 cut(s) 649, 728, 1183
Fnu4HI GCNGC 1 cut(s) 305
FokI GGATG 1 cut(s) 145
FriOI GRGCYC 2 cut(s) 636, 706
Fsp4HI GCNGC 1 cut(s) 305
FspBI CTAG 3 cut(s) 348, 1101, 1248
FspI TGCGCA 1 cut(s) 1011
GlaI GCGC 3 cut(s) 201, 303, 1011
GluI GCNGC 1 cut(s) 305
GsaI CCCAGC 1 cut(s) 452
HaeIII GGCC 2 cut(s) 230, 634
HhaI GCGC 3 cut(s) 202, 304, 1012
Hin6I GCGC 3 cut(s) 200, 302, 1010
HinP1I GCGC 3 cut(s) 200, 302, 1010
HincII GTYRAC 1 cut(s) 1129
HindII GTYRAC 1 cut(s) 1129
HindIII AAGCTT 1 cut(s) 1257
HinfI GANTC 4 cut(s) 279, 335, 434, 1003
HphI GGTGA 3 cut(s) 315, 565, 912
Hpy166II GTNNAC 1 cut(s) 1129
Hpy188I TCNGA 2 cut(s) 393, 694
Hpy188III TCNNGA 3 cut(s) 755, 1205, 1213
Hpy8I GTNNAC 1 cut(s) 1129
HpyAV CCTTC 4 cut(s) 491, 550, 626, 1246
HpyCH4III ACNGT 2 cut(s) 817, 1157
HpyCH4IV ACGT 2 cut(s) 395, 821
HpyF10VI GCNNNNNNNGC 2 cut(s) 863, 1097
HpyF3I CTNAG 2 cut(s) 693, 734
HpySE526I ACGT 2 cut(s) 395, 821
HspAI GCGC 3 cut(s) 200, 302, 1010
KflI GGGWCCC 1 cut(s) 742
KpnI GGTACC 1 cut(s) 988
Kzo9I GATC 2 cut(s) 61, 612
LmnI GCTCC 2 cut(s) 346, 589
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 3 cut(s) 123, 391, 466
MaeI CTAG 3 cut(s) 348, 1101, 1248
MaeII ACGT 2 cut(s) 395, 821
MaeIII GTNAC 3 cut(s) 817, 918, 1151
MalI GATC 2 cut(s) 63, 614
MboI GATC 2 cut(s) 61, 612
MboII GAAGA 3 cut(s) 543, 1136, 1172
MhlI GDGCHC 3 cut(s) 19, 636, 706
MluCI AATT 5 cut(s) 259, 358, 710, 759, 1227
MnlI CCTC 3 cut(s) 354, 448, 634
MseI TTAA 3 cut(s) 114, 357, 627
MslI CAYNNNNRTG 2 cut(s) 471, 1017
MspA1I CMGCKG 4 cut(s) 140, 448, 563, 926
MvnI CGCG 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 863, 1097
NcoI CCATGG 1 cut(s) 466
NdeII GATC 2 cut(s) 61, 612
NlaIV GGNNCC 4 cut(s) 634, 743, 744, 986
NmuCI GTSAC 2 cut(s) 817, 918
NsbI TGCGCA 1 cut(s) 1011
NspI RCATGY 3 cut(s) 489, 874, 1057
OliI CACNNNNGTG 1 cut(s) 1017
PaeI GCATGC 1 cut(s) 874
PagI TCATGA 2 cut(s) 754, 1204
PfeI GAWTC 4 cut(s) 279, 335, 434, 1003
PkrI GCNGC 1 cut(s) 306
PpuMI RGGWCCY 1 cut(s) 742
PsiI TTATAA 1 cut(s) 843
Psp5II RGGWCCY 1 cut(s) 742
PspFI CCCAGC 1 cut(s) 448
PspN4I GGNNCC 4 cut(s) 634, 743, 744, 986
PspOMI GGGCCC 1 cut(s) 632
PspPI GGNCC 4 cut(s) 229, 632, 633, 742
PspPPI RGGWCCY 1 cut(s) 742
PvuII CAGCTG 3 cut(s) 140, 563, 926
RsaI GTAC 3 cut(s) 8, 517, 986
RsaNI GTAC 3 cut(s) 7, 516, 985
RseI CAYNNNNRTG 2 cut(s) 471, 1017
SaqAI TTAA 3 cut(s) 114, 357, 627
SatI GCNGC 1 cut(s) 305
Sau3AI GATC 2 cut(s) 61, 612
Sau96I GGNCC 4 cut(s) 229, 632, 633, 742
ScaI AGTACT 1 cut(s) 517
SduI GDGCHC 3 cut(s) 19, 636, 706
SfaNI GCATC 3 cut(s) 123, 391, 466
SinI GGWCC 1 cut(s) 742
SmiMI CAYNNNNRTG 2 cut(s) 471, 1017
SmlI CTYRAG 1 cut(s) 439
SmoI CTYRAG 1 cut(s) 439
SphI GCATGC 1 cut(s) 874
Sse9I AATT 5 cut(s) 259, 358, 710, 759, 1227
SsiI CCGC 1 cut(s) 446
SspI AATATT 1 cut(s) 120
SspMI CTAG 3 cut(s) 348, 1101, 1248
StyI CCWWGG 2 cut(s) 466, 1221
TaaI ACNGT 2 cut(s) 817, 1157
TaiI ACGT 2 cut(s) 398, 824
TasI AATT 5 cut(s) 259, 358, 710, 759, 1227
TatI WGTACW 1 cut(s) 515
TfiI GAWTC 4 cut(s) 279, 335, 434, 1003
Tru1I TTAA 3 cut(s) 114, 357, 627
Tru9I TTAA 3 cut(s) 114, 357, 627
TscAI CASTG 2 cut(s) 79, 888
TseFI GTSAC 2 cut(s) 817, 918
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 2 cut(s) 817, 918
TspDTI ATGAA 5 cut(s) 271, 743, 771, 1193, 1221
TspGWI ACGGA 2 cut(s) 442, 1128
TspRI CASTG 2 cut(s) 79, 888
VpaK11BI GGWCC 1 cut(s) 742
XapI RAATTY 1 cut(s) 1227
XceI RCATGY 3 cut(s) 489, 874, 1057
XspI CTAG 3 cut(s) 348, 1101, 1248
ZrmI AGTACT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.