AT3G25585

Belongs to the CDP-alcohol phosphatidyltransferase class-I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001984
Physical Location & Seq
Forward (+)
9295175 .. 9298746
3572 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G25585.2

Sequence Viewer

Length: 1170 bp
ATGGGTTACATAGGAGCTCATGGTGTAGCTGCTCTTAAGAAACACAAATACAGTGGTGTTGATCACTCTTATCTTGCCAAATATGTTCTCCAACCTTTTTGGAACCGTTTTGTCAAAATCTTCCCTCTATGGATGCCCCCCAACATGATAACACTTATGGGGTTCATGTTTCTTCTCACATCTGCTCTCTTAGGCTATATATACTCACCTAAGTTGGATTCTCCACCTCCTCGATGGGTCCACTTTGCACACGGCTTACTTCTGTTTTTATATCAGACATTTGATGCGGTTGATGGGAAGCAAGCACGAAGAACAAATTCATCTAGCCCACTAGGAGAGCTTTTTGACCATGGTTGCGATGCACTTGGCTGTGCGTTAGAAACAATGGCATATGGGAGTACTGCTATGTGTGGAAGAGATACTTTCTGGTTTTGGGTTATTTCTGCTGTTCCATTTTTTGGAGCAACATGGGAACACTATTTTACCAATACGCTTACTCTTCCGGTAGTCAATGGTCCTACAGAAGGTCTTGCACTTATATACTGTGGCCATTTCTTCACAGCCATTGTTGGTGCGGAGTGGTGGGCTCAGCCGTTTGGGAAGTCGATTCCTTTGTTTAGTTGGGTTCCGTTTTTGAACGAGATGCAAATGTCCAGAATAATACTATTCTCCATGATTTTCTTTGCTGTTATACCAACCCTTGCAATCAACACGTCTAATGTTTACAAAGTTGTACATTCAAGAAATGGAAGCATGCTTCTAGCATTAGCTATGCTATATCCCTTAGTCACGTTAATTGCAGGAGTTCTGATTTGGGATTACTTGTCTCCAATTGATCTCATAAGAAACTACCCTCACTTAGTTGTGTTGGGAACTGGTCTTGCATTTGGATTCCTTGTGGGAAGAATGATTCTAGCTCACTTATGTGACGAACCAAAAGGATTGAAAACAAACATGTGTATGTCACTGCTTTACCTTCCATTTGCACTAGCAAATGCTCTAACCGCTAGACTCAACGACGGGGTTCCTCTTGTGGATGAGTTTTGGGTTCTTCTTGGATATTGTATATTCACATTGTCACTATATGCGCATTTTGCAACTTCAGTCATTCATGAGATCACAACTGCACTTGGAATCTACTGCTTCAGGATTACTCGGAAAGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko00565 ko01100 ko01110 map00440 map00564 map00565 map01100 map01110
Pfam Domains
Protein Families
CDP-OH_P_transf

Protein Analysis

389

Amino Acids

43.64

Weight (kDa)

8.07

Isoelectric Point (pI)

30.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDP-OH_P_transf PF01066 45 - 150 1.3e-09 CDP-alcohol phosphatidyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1089
AccB7I CCANNNNNTGG 1 cut(s) 458
AciI CCGC 3 cut(s) 287, 575, 1005
AcoI YGGCCR 1 cut(s) 547
AcsI RAATTY 1 cut(s) 316
AcuI CTGAAG 2 cut(s) 1086, 1129
AfaI GTAC 2 cut(s) 400, 735
AfiI CCNNNNNNNGG 2 cut(s) 458, 524
AflII CTTAAG 1 cut(s) 35
AflIII ACRYGT 2 cut(s) 711, 954
AgsI TTSAA 3 cut(s) 637, 741, 946
AjiI CACGTC 1 cut(s) 714
AleI CACNNNNGTG 1 cut(s) 924
AluBI AGCT 6 cut(s) 17, 29, 340, 770, 917, 1166
AluI AGCT 6 cut(s) 17, 29, 340, 770, 917, 1166
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 831
AoxI GGCC 1 cut(s) 547
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 316
Asp700I GAANNNNTTC 1 cut(s) 316
AspLEI GCGC 1 cut(s) 1090
AspS9I GGNCC 2 cut(s) 238, 515
AsuHPI GGTGA 1 cut(s) 198
AvaII GGWCC 2 cut(s) 238, 515
BalI TGGCCA 1 cut(s) 549
BanII GRGCYC 2 cut(s) 19, 589
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 228, 287
BceAI ACGGC 2 cut(s) 268, 577
BclI TGATCA 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 831
BfaI CTAG 6 cut(s) 324, 332, 761, 914, 989, 1008
BfmI CTRYAG 1 cut(s) 519
BfrI CTTAAG 1 cut(s) 35
BisI GCNGC 1 cut(s) 30
BlpI GCTNAGC 1 cut(s) 588
BlsI GCNGC 1 cut(s) 31
BmcAI AGTACT 1 cut(s) 400
Bme18I GGWCC 2 cut(s) 238, 515
BmgBI CACGTC 1 cut(s) 714
BmgT120I GGNCC 2 cut(s) 238, 515
BmiI GGNNCC 4 cut(s) 104, 239, 627, 1026
BmsI GCATC 4 cut(s) 123, 274, 349, 633
Bpu1102I GCTNAGC 1 cut(s) 588
BsaJI CCNNGG 1 cut(s) 349
BsaWI WCCGGW 1 cut(s) 502
Bsc4I CCNNNNNNNGG 2 cut(s) 458, 524
Bse1I ACTGG 1 cut(s) 880
BseDI CCNNGG 1 cut(s) 349
BseGI GGATG 2 cut(s) 138, 1042
BseLI CCNNNNNNNGG 2 cut(s) 458, 524
BseMII CTCAG 1 cut(s) 602
BseNI ACTGG 1 cut(s) 880
BseRI GAGGAG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 16
BsgI GTGCAG 1 cut(s) 1110
BshFI GGCC 1 cut(s) 549
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 503
BslI CCNNNNNNNGG 2 cut(s) 458, 524
BsmAI GTCTC 1 cut(s) 831
BsnI GGCC 1 cut(s) 549
Bsp1286I GDGCHC 2 cut(s) 19, 589
Bsp1407I TGTACA 1 cut(s) 733
Bsp143I GATC 3 cut(s) 61, 835, 1116
Bsp1720I GCTNAGC 1 cut(s) 588
Bsp19I CCATGG 1 cut(s) 349
BspACI CCGC 3 cut(s) 287, 575, 1005
BspANI GGCC 1 cut(s) 549
BspCNI CTCAG 1 cut(s) 601
BspHI TCATGA 1 cut(s) 1111
BspLI GGNNCC 4 cut(s) 104, 239, 627, 1026
BspTI CTTAAG 1 cut(s) 35
BsrGI TGTACA 1 cut(s) 733
BsrI ACTGG 1 cut(s) 880
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 3 cut(s) 61, 835, 1116
BssT1I CCWWGG 1 cut(s) 349
Bst4CI ACNGT 3 cut(s) 53, 107, 545
Bst6I CTCTTC 2 cut(s) 409, 504
BstAFI CTTAAG 1 cut(s) 35
BstAUI TGTACA 1 cut(s) 733
BstC8I GCNNGC 2 cut(s) 303, 755
BstDEI CTNAG 5 cut(s) 190, 210, 588, 784, 859
BstDSI CCRYGG 1 cut(s) 349
BstENI CCTNNNNNAGG 1 cut(s) 522
BstF5I GGATG 2 cut(s) 138, 1042
BstHHI GCGC 1 cut(s) 1090
BstKTI GATC 3 cut(s) 64, 838, 1119
BstMAI GTCTC 1 cut(s) 831
BstMBI GATC 3 cut(s) 61, 835, 1116
BstMWI GCNNNNNNNGC 2 cut(s) 1004, 1094
BstNSI RCATGY 2 cut(s) 757, 958
BstSFI CTRYAG 1 cut(s) 519
BstV1I GCAGC 1 cut(s) 16
BsuRI GGCC 1 cut(s) 549
BtgI CCRYGG 1 cut(s) 349
BtgZI GCGATG 1 cut(s) 372
BtrI CACGTC 1 cut(s) 714
BtsCI GGATG 2 cut(s) 138, 1042
BtsI GCAGTG 1 cut(s) 965
BtsIMutI CAGTG 2 cut(s) 58, 965
Cac8I GCNNGC 2 cut(s) 303, 755
CciI TCATGA 1 cut(s) 1111
CfoI GCGC 1 cut(s) 1090
Cfr13I GGNCC 2 cut(s) 238, 515
Csp6I GTAC 2 cut(s) 399, 734
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 9 cut(s) 20, 145, 166, 350, 468, 673, 754, 955, 1112
CviQI GTAC 2 cut(s) 399, 734
DdeI CTNAG 5 cut(s) 190, 210, 588, 784, 859
DpnI GATC 3 cut(s) 63, 837, 1118
DpnII GATC 3 cut(s) 61, 835, 1116
EaeI YGGCCR 1 cut(s) 547
Eam1104I CTCTTC 2 cut(s) 409, 504
EarI CTCTTC 2 cut(s) 409, 504
Ecl136II GAGCTC 1 cut(s) 17
Eco130I CCWWGG 1 cut(s) 349
Eco24I GRGCYC 2 cut(s) 19, 589
Eco47I GGWCC 2 cut(s) 238, 515
Eco53kI GAGCTC 1 cut(s) 17
Eco57I CTGAAG 2 cut(s) 1086, 1129
EcoICRI GAGCTC 1 cut(s) 17
EcoNI CCTNNNNNAGG 1 cut(s) 522
EcoT14I CCWWGG 1 cut(s) 349
EcoT38I GRGCYC 2 cut(s) 19, 589
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 9 cut(s) 23, 148, 169, 353, 471, 676, 757, 958, 1115
FalI AAGNNNNNCTT 2 cut(s) 406, 438
FatI CATG 9 cut(s) 19, 144, 165, 349, 467, 672, 753, 954, 1111
FauNDI CATATG 1 cut(s) 391
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 2 cut(s) 145, 1049
FriOI GRGCYC 2 cut(s) 19, 589
Fsp4HI GCNGC 1 cut(s) 30
FspAI RTGCGCAY 1 cut(s) 1089
FspBI CTAG 6 cut(s) 324, 332, 761, 914, 989, 1008
FspI TGCGCA 1 cut(s) 1089
GlaI GCGC 1 cut(s) 1089
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 549
HapII CCGG 1 cut(s) 503
HhaI GCGC 1 cut(s) 1090
Hin1II CATG 9 cut(s) 23, 148, 169, 353, 471, 676, 757, 958, 1115
Hin6I GCGC 1 cut(s) 1088
HinP1I GCGC 1 cut(s) 1088
HindIII AAGCTT 1 cut(s) 1164
HinfI GANTC 6 cut(s) 218, 607, 891, 910, 1011, 1134
HpaII CCGG 1 cut(s) 503
HphI GGTGA 1 cut(s) 198
Hpy166II GTNNAC 2 cut(s) 241, 724
Hpy188I TCNGA 3 cut(s) 276, 810, 1158
Hpy188III TCNNGA 4 cut(s) 654, 741, 1112, 1147
Hpy8I GTNNAC 2 cut(s) 241, 724
Hpy99I CGWCG 1 cut(s) 1022
HpyAV CCTTC 2 cut(s) 518, 986
HpyCH4III ACNGT 3 cut(s) 53, 107, 545
HpyCH4IV ACGT 2 cut(s) 713, 791
HpyF10VI GCNNNNNNNGC 2 cut(s) 1004, 1094
HpyF3I CTNAG 5 cut(s) 190, 210, 588, 784, 859
HpySE526I ACGT 2 cut(s) 713, 791
Hsp92II CATG 9 cut(s) 23, 148, 169, 353, 471, 676, 757, 958, 1115
HspAI GCGC 1 cut(s) 1088
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 3 cut(s) 61, 835, 1116
LmnI GCTCC 2 cut(s) 14, 461
LpnPI CCDG 6 cut(s) 412, 516, 667, 786, 861, 1132
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 4 cut(s) 123, 274, 349, 633
MaeI CTAG 6 cut(s) 324, 332, 761, 914, 989, 1008
MaeII ACGT 2 cut(s) 713, 791
MaeIII GTNAC 5 cut(s) 5, 787, 926, 963, 1077
MalI GATC 3 cut(s) 63, 837, 1118
MboI GATC 3 cut(s) 61, 835, 1116
MboII GAAGA 8 cut(s) 112, 164, 321, 426, 491, 547, 915, 1043
MfeI CAATTG 1 cut(s) 831
MhlI GDGCHC 2 cut(s) 19, 589
MlsI TGGCCA 1 cut(s) 549
MluCI AATT 3 cut(s) 316, 795, 831
MluNI TGGCCA 1 cut(s) 549
MlyI GAGTC 1 cut(s) 1005
MmeI TCCRAC 2 cut(s) 115, 195
MnlI CCTC 5 cut(s) 135, 237, 240, 864, 1038
Mox20I TGGCCA 1 cut(s) 549
MroXI GAANNNNTTC 1 cut(s) 316
MscI TGGCCA 1 cut(s) 549
MseI TTAA 2 cut(s) 36, 794
MslI CAYNNNNRTG 2 cut(s) 924, 959
Msp20I TGGCCA 1 cut(s) 549
MspCI CTTAAG 1 cut(s) 35
MspI CCGG 1 cut(s) 503
MunI CAATTG 1 cut(s) 831
MwoI GCNNNNNNNGC 2 cut(s) 1004, 1094
NcoI CCATGG 1 cut(s) 349
NdeI CATATG 1 cut(s) 391
NdeII GATC 3 cut(s) 61, 835, 1116
NlaIII CATG 9 cut(s) 23, 148, 169, 353, 471, 676, 757, 958, 1115
NlaIV GGNNCC 4 cut(s) 104, 239, 627, 1026
NmuCI GTSAC 4 cut(s) 787, 926, 963, 1077
NsbI TGCGCA 1 cut(s) 1089
NspI RCATGY 2 cut(s) 757, 958
OliI CACNNNNGTG 1 cut(s) 924
PaeI GCATGC 1 cut(s) 757
PagI TCATGA 1 cut(s) 1111
PciI ACATGT 1 cut(s) 954
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 5 cut(s) 218, 607, 891, 910, 1134
PflMI CCANNNNNTGG 1 cut(s) 458
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 1005
PpsI GAGTC 1 cut(s) 1005
PscI ACATGT 1 cut(s) 954
Psp124BI GAGCTC 1 cut(s) 19
PspN4I GGNNCC 4 cut(s) 104, 239, 627, 1026
PspPI GGNCC 2 cut(s) 238, 515
RsaI GTAC 2 cut(s) 400, 735
RsaNI GTAC 2 cut(s) 399, 734
RseI CAYNNNNRTG 2 cut(s) 924, 959
SacI GAGCTC 1 cut(s) 19
SaqAI TTAA 2 cut(s) 36, 794
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 3 cut(s) 61, 835, 1116
Sau96I GGNCC 2 cut(s) 238, 515
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 1 cut(s) 1005
SduI GDGCHC 2 cut(s) 19, 589
SfaNI GCATC 4 cut(s) 123, 274, 349, 633
SfcI CTRYAG 1 cut(s) 519
SinI GGWCC 2 cut(s) 238, 515
SmiMI CAYNNNNRTG 2 cut(s) 924, 959
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
SphI GCATGC 1 cut(s) 757
Sse9I AATT 3 cut(s) 316, 795, 831
SsiI CCGC 3 cut(s) 287, 575, 1005
SspMI CTAG 6 cut(s) 324, 332, 761, 914, 989, 1008
SstI GAGCTC 1 cut(s) 19
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 3 cut(s) 53, 107, 545
TaiI ACGT 2 cut(s) 716, 794
TaqI TCGA 2 cut(s) 232, 605
TasI AATT 3 cut(s) 316, 795, 831
TatI WGTACW 2 cut(s) 398, 733
TfiI GAWTC 5 cut(s) 218, 607, 891, 910, 1134
Tru1I TTAA 2 cut(s) 36, 794
Tru9I TTAA 2 cut(s) 36, 794
TscAI CASTG 2 cut(s) 58, 972
TseFI GTSAC 4 cut(s) 787, 926, 963, 1077
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 4 cut(s) 787, 926, 963, 1077
TspDTI ATGAA 3 cut(s) 154, 309, 1100
TspGWI ACGGA 1 cut(s) 618
TspRI CASTG 2 cut(s) 58, 972
Van91I CCANNNNNTGG 1 cut(s) 458
Vha464I CTTAAG 1 cut(s) 35
VpaK11BI GGWCC 2 cut(s) 238, 515
XagI CCTNNNNNAGG 1 cut(s) 522
XapI RAATTY 1 cut(s) 316
XceI RCATGY 2 cut(s) 757, 958
XcmI CCANNNNNNNNNTGG 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 6 cut(s) 324, 332, 761, 914, 989, 1008
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.