AT1G13830

PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007655
Physical Location & Seq
Reverse (-)
4739693 .. 4741189
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13830.2

Sequence Viewer

Length: 594 bp
ATGAAAGTGCTTCTCGGTCTTTTGCTTCTCTTGTCCTTGACCAATTCTTCAAGTGCAATTTACTGTCTCTGTAAAGATGGGATAGGAGACACAGAGCTTCAAACATCAATAGACTATGCATGTGGAACCTTAGCTGATTGTAATCCTATACATGATAAGGGTACTTGTTATCAACCAGACACCATCAAAAGCCACTGTGATTGGGCTGTGAATAGCTACTTCCAAAACGCAGCTCAAGTCCCTGGAAGCTGCAATTTCTCTGGCACTGCCACTACCAATCCAAACCCACCTTCCAATTTGGCTAATGGTTGCATCTATCCGTCAAGCCCTAGCTCTACTAGGTCTCCTCCATCAACAACACCACCAACGGGAACAACTCCCACAAACGGAACCACTCCATTTCCGGGAACTCCATTTCCAGGAACACCGTTCCCGGGAACTCCTCCGGTGTTTGGTCCAACCGGAGTCTTCAACCCAAGCAACCCAGGCAGTGGTGCTTCAAGTTTGGGCACCTCCTCTGTTTTCACACTCTGTTTTTCATTACTAGCCTTTCTATGGGGCTCTGATGTAAGGTTCGGATTTAGCCACGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

197

Amino Acids

20.38

Weight (kDa)

5.31

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 35 - 105 1.7e-19 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 509
AccB7I CCANNNNNTGG 1 cut(s) 491
AcvI CACGTG 1 cut(s) 589
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 8 cut(s) 368, 386, 404, 419, 434, 452, 491, 555
AflIII ACRYGT 1 cut(s) 588
AgsI TTSAA 4 cut(s) 51, 101, 472, 501
AjnI CCWGG 3 cut(s) 241, 418, 484
AjuI GAANNNNNNNTTGG 2 cut(s) 274, 306
AloI GAACNNNNNNTCC 2 cut(s) 400, 432
AluBI AGCT 6 cut(s) 97, 134, 216, 233, 249, 333
AluI AGCT 6 cut(s) 97, 134, 216, 233, 249, 333
Alw26I GTCTC 3 cut(s) 71, 81, 348
Ama87I CYCGRG 1 cut(s) 433
ApeKI GCWGC 2 cut(s) 230, 249
AspS9I GGNCC 1 cut(s) 455
AsuC2I CCSGG 3 cut(s) 405, 434, 435
AvaI CYCGRG 1 cut(s) 433
AvaII GGWCC 1 cut(s) 455
BaeGI GKGCMC 1 cut(s) 512
BanI GGYRCC 1 cut(s) 509
BanII GRGCYC 1 cut(s) 563
BbrPI CACGTG 1 cut(s) 589
BbsI GAAGAC 1 cut(s) 460
BbvI GCAGC 2 cut(s) 236, 242
BccI CCATC 3 cut(s) 71, 191, 358
BciT130I CCWGG 3 cut(s) 243, 420, 486
BcnI CCSGG 3 cut(s) 405, 434, 435
BcoDI GTCTC 3 cut(s) 71, 81, 348
BfaI CTAG 3 cut(s) 330, 339, 545
BisI GCNGC 2 cut(s) 231, 250
BlsI GCNGC 2 cut(s) 232, 251
Bme1390I CCNGG 6 cut(s) 243, 405, 420, 434, 435, 486
Bme18I GGWCC 1 cut(s) 455
BmeT110I CYCGRG 1 cut(s) 433
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 3 cut(s) 127, 391, 511
BmrFI CCNGG 6 cut(s) 243, 405, 420, 434, 435, 486
BmsI GCATC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 460
Bpu10I CCTNAGC 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 219
BpuMI CCSGG 3 cut(s) 405, 434, 435
BsaAI YACGTR 1 cut(s) 589
BsaBI GATNNNNATC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 3 cut(s) 241, 433, 484
BsaWI WCCGGW 2 cut(s) 445, 461
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 8 cut(s) 368, 386, 404, 419, 434, 452, 491, 555
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 3 cut(s) 243, 420, 486
BseDI CCNNGG 3 cut(s) 241, 433, 484
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 8 cut(s) 368, 386, 404, 419, 434, 452, 491, 555
BseRI GAGGAG 3 cut(s) 336, 432, 505
BseSI GKGCMC 1 cut(s) 512
BseXI GCAGC 2 cut(s) 236, 242
BshNI GGYRCC 1 cut(s) 509
BsiHKCI CYCGRG 1 cut(s) 433
BsiSI CCGG 4 cut(s) 404, 434, 446, 462
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 8 cut(s) 368, 386, 404, 419, 434, 452, 491, 555
BsmAI GTCTC 3 cut(s) 71, 81, 348
BsmFI GGGAC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 348
BsoBI CYCGRG 1 cut(s) 433
Bsp1286I GDGCHC 2 cut(s) 512, 563
BspLI GGNNCC 3 cut(s) 127, 391, 511
BspT107I GGYRCC 1 cut(s) 509
BspTNI GGTCTC 1 cut(s) 348
BssECI CCNNGG 3 cut(s) 241, 433, 484
Bst2UI CCWGG 3 cut(s) 243, 420, 486
Bst4CI ACNGT 3 cut(s) 65, 197, 429
BstBAI YACGTR 1 cut(s) 589
BstDEI CTNAG 1 cut(s) 130
BstMAI GTCTC 3 cut(s) 71, 81, 348
BstMWI GCNNNNNNNGC 1 cut(s) 486
BstNI CCWGG 3 cut(s) 243, 420, 486
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 6 cut(s) 241, 403, 418, 432, 433, 484
BstSLI GKGCMC 1 cut(s) 512
BstV1I GCAGC 2 cut(s) 236, 242
BstV2I GAAGAC 1 cut(s) 460
BtsI GCAGTG 2 cut(s) 264, 496
BtsIMutI CAGTG 3 cut(s) 193, 264, 496
Cfr13I GGNCC 1 cut(s) 455
Cfr9I CCCGGG 1 cut(s) 433
Csp6I GTAC 1 cut(s) 162
CspCI CAANNNNNGTGG 2 cut(s) 182, 217
CviAII CATG 2 cut(s) 120, 152
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 563
Eco31I GGTCTC 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 455
Eco72I CACGTG 1 cut(s) 589
Eco88I CYCGRG 1 cut(s) 433
EcoRII CCWGG 3 cut(s) 241, 418, 484
EcoT22I ATGCAT 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 563
FaeI CATG 2 cut(s) 123, 155
FaiI YATR 5 cut(s) 117, 121, 149, 153, 556
FaqI GGGAC 1 cut(s) 224
FatI CATG 2 cut(s) 119, 151
Fnu4HI GCNGC 2 cut(s) 231, 250
FriOI GRGCYC 1 cut(s) 563
Fsp4HI GCNGC 2 cut(s) 231, 250
FspBI CTAG 3 cut(s) 330, 339, 545
GluI GCNGC 2 cut(s) 231, 250
HapII CCGG 4 cut(s) 404, 434, 446, 462
Hin1II CATG 2 cut(s) 123, 155
HinfI GANTC 1 cut(s) 465
HpaII CCGG 4 cut(s) 404, 434, 446, 462
Hpy188I TCNGA 2 cut(s) 565, 578
HpyAV CCTTC 1 cut(s) 300
HpyCH4III ACNGT 3 cut(s) 65, 197, 429
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 4 cut(s) 56, 119, 252, 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 486
HpyF3I CTNAG 1 cut(s) 130
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 2 cut(s) 123, 155
Lsp1109I GCAGC 2 cut(s) 236, 242
LweI GCATC 1 cut(s) 321
MaeI CTAG 3 cut(s) 330, 339, 545
MaeII ACGT 1 cut(s) 588
MboII GAAGA 2 cut(s) 39, 460
MhlI GDGCHC 2 cut(s) 512, 563
MluCI AATT 4 cut(s) 43, 57, 253, 295
MlyI GAGTC 1 cut(s) 474
MmeI TCCRAC 1 cut(s) 482
MnlI CCTC 4 cut(s) 357, 453, 523, 526
Mph1103I ATGCAT 1 cut(s) 121
MspI CCGG 4 cut(s) 404, 434, 446, 462
MspR9I CCNGG 6 cut(s) 243, 405, 420, 434, 435, 486
MvaI CCWGG 3 cut(s) 243, 420, 486
MwoI GCNNNNNNNGC 1 cut(s) 486
NciI CCSGG 3 cut(s) 405, 434, 435
NlaIII CATG 2 cut(s) 123, 155
NlaIV GGNNCC 3 cut(s) 127, 391, 511
NsiI ATGCAT 1 cut(s) 121
NspI RCATGY 1 cut(s) 123
PflMI CCANNNNNTGG 1 cut(s) 491
PfoI TCCNGGA 2 cut(s) 403, 418
PkrI GCNGC 2 cut(s) 232, 251
PleI GAGTC 1 cut(s) 473
PmaCI CACGTG 1 cut(s) 589
PmlI CACGTG 1 cut(s) 589
PpsI GAGTC 1 cut(s) 473
Ppu21I YACGTR 1 cut(s) 589
Psp6I CCWGG 3 cut(s) 241, 418, 484
PspCI CACGTG 1 cut(s) 589
PspGI CCWGG 3 cut(s) 241, 418, 484
PspN4I GGNNCC 3 cut(s) 127, 391, 511
PspPI GGNCC 1 cut(s) 455
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SatI GCNGC 2 cut(s) 231, 250
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 1 cut(s) 474
ScrFI CCNGG 6 cut(s) 243, 405, 420, 434, 435, 486
SduI GDGCHC 2 cut(s) 512, 563
SfaNI GCATC 1 cut(s) 321
SinI GGWCC 1 cut(s) 455
SmaI CCCGGG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 4 cut(s) 43, 57, 253, 295
SspMI CTAG 3 cut(s) 330, 339, 545
StyD4I CCNGG 6 cut(s) 241, 403, 418, 432, 433, 484
TaaI ACNGT 3 cut(s) 65, 197, 429
TaiI ACGT 1 cut(s) 591
TaqII GACCGA 1 cut(s) 5
TasI AATT 4 cut(s) 43, 57, 253, 295
TscAI CASTG 3 cut(s) 200, 271, 496
TseI GCWGC 2 cut(s) 230, 249
TspDTI ATGAA 2 cut(s) 17, 528
TspGWI ACGGA 2 cut(s) 309, 402
TspMI CCCGGG 1 cut(s) 433
TspRI CASTG 3 cut(s) 200, 271, 496
Van91I CCANNNNNTGG 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 455
XceI RCATGY 1 cut(s) 123
XmaI CCCGGG 1 cut(s) 433
XspI CTAG 3 cut(s) 330, 339, 545
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.