Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0007655

Physical Location & Seq

Genomic Coordinates Reverse (-)

52949711 .. 52951781

Gene Structure 2071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG372300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCTGCTTTAGTATATATAGTGCTTTTCTTGGCCCTCACTGGGCATTCAAGTGCTACTTATTGCATATGTAAAGATGGGGTTGGTGATGCTGCTCTTCAGAAGGCACTGGACTATGCTTGTGGAGCTGGAGCTGACTGTACACCAATCATTCAAAACGGTGCGTGTTACAACCCCAACACAGTCAAAGACCACTGCAACTGGGCTGTTAATAGCTATTTCCAGAAGAAGGGTCAAACCCAAATGAGCTGTGACTTTGCAGGAGCTGCCACTATTAGCCAAACTCCTCCAAGTACCACGAGTTCCAGTTGTGTTTATCCTGCAAGTGGCAGTAATTCCACCACAAACTCAACCACCACTACTCCAAGCACAACTCCAACCACAGGCACAACCCCAACCACAACTCCAACCACCGGCACGACGACTCCAACCACAGGCACAACAACCCCCAGTACAACTCCCTCAGTCTTTGGAATAAGCCCAACAGGGAGTTCACTCACTGATTCAAGCCCTGATATGGCTCCTCACTTCATCGCAGCAGCAGCAGCTTTCTCCTTTTCAGTGTTTTTGTTGCTATGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

194

Amino Acids

19.74

Weight (kDa)

5.25

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	21 - 91	2.2e-21	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13830 AT1G13830 AT2G03505 AT2G03505 AT2G03505 AT2G03505
fragaria_vesca	FvH4_4g30140
malus_domestica	MD13G1063300.v1.1 MD13G1172000.v1.1 MD16G1061700.v1.1
prunus_persica	Prupe.1G286200_v2.0.a1
pyrus_communis	pycom13g05560 pycom16g05380
rosa_chinensis	RchiOBHm_Chr4g0438481
rosa_laevigata	RLG00000006360
rosa_multiflora	Rmu_sc0002327.1_g000020
rosa_roxburghii	Rroxscaffold_5G00379490
rosa_rugosa	Rorug04G0310200
rosa_samantha	Rh4AG361000 Rh4BG372300 Rh4CG386300 Rh4DG367100
rosa_wichuraiana	Rw0G006580 Rw0G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	3 cut(s)	142, 295, 454
AfiI	CCNNNNNNNGG	7 cut(s)	42, 229, 326, 383, 413, 434, 517
AgsI	TTSAA	3 cut(s)	51, 155, 507
AjuI	GAANNNNNNNTTGG	2 cut(s)	475, 507
AluBI	AGCT	6 cut(s)	128, 134, 216, 249, 266, 548
AluI	AGCT	6 cut(s)	128, 134, 216, 249, 266, 548
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	7 cut(s)	5, 92, 266, 536, 539, 542, 545
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	98
BauI	CACGAG	1 cut(s)	298
BbvI	GCAGC	6 cut(s)	79, 253, 548, 551, 554, 557
BccI	CCATC	1 cut(s)	71
BisI	GCNGC	7 cut(s)	6, 93, 267, 537, 540, 543, 546
BlsI	GCNGC	7 cut(s)	7, 94, 268, 538, 541, 544, 547
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	522
BmrI	ACTGGG	3 cut(s)	51, 211, 444
BmsI	GCATC	1 cut(s)	79
BmuI	ACTGGG	3 cut(s)	51, 211, 444
BpmI	CTGGAG	1 cut(s)	150
BsaXI	ACNNNNNCTCC	6 cut(s)	346, 376, 388, 409, 418, 439
Bsc4I	CCNNNNNNNGG	7 cut(s)	42, 229, 326, 383, 413, 434, 517
Bse118I	RCCGGY	1 cut(s)	413
Bse1I	ACTGG	5 cut(s)	46, 114, 206, 306, 450
BseLI	CCNNNNNNNGG	7 cut(s)	42, 229, 326, 383, 413, 434, 517
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	5 cut(s)	46, 114, 206, 306, 450
BseRI	GAGGAG	2 cut(s)	276, 513
BseXI	GCAGC	6 cut(s)	79, 253, 548, 551, 554, 557
BshFI	GGCC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	414
BslI	CCNNNNNNNGG	7 cut(s)	42, 229, 326, 383, 413, 434, 517
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	35
Bsp1407I	TGTACA	1 cut(s)	140
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	476
BspLI	GGNNCC	1 cut(s)	522
BspQI	GCTCTTC	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	413
BsrGI	TGTACA	1 cut(s)	140
BsrI	ACTGG	5 cut(s)	46, 114, 206, 306, 450
BssAI	RCCGGY	1 cut(s)	413
BssSI	CACGAG	1 cut(s)	298
Bst2BI	CACGAG	1 cut(s)	298
Bst4CI	ACNGT	3 cut(s)	140, 161, 184
Bst6I	CTCTTC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstAUI	TGTACA	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	463
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 266, 542, 545
BstV1I	GCAGC	6 cut(s)	79, 253, 548, 551, 554, 557
BsuRI	GGCC	1 cut(s)	35
BtgZI	GCGATG	1 cut(s)	517
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	5 cut(s)	39, 107, 193, 498, 567
CaiI	CAGNNNCTG	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	413
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	3 cut(s)	141, 294, 453
CviQI	GTAC	3 cut(s)	141, 294, 453
DdeI	CTNAG	1 cut(s)	463
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	83
FaiI	YATR	8 cut(s)	16, 18, 20, 68, 70, 117, 518, 577
FalI	AAGNNNNNCTT	2 cut(s)	43, 75
FauNDI	CATATG	1 cut(s)	68
Fnu4HI	GCNGC	7 cut(s)	6, 93, 267, 537, 540, 543, 546
Fsp4HI	GCNGC	7 cut(s)	6, 93, 267, 537, 540, 543, 546
GluI	GCNGC	7 cut(s)	6, 93, 267, 537, 540, 543, 546
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	414
HinfI	GANTC	2 cut(s)	424, 503
HpaII	CCGG	1 cut(s)	414
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	143, 494
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	2 cut(s)	143, 494
Hpy99I	CGWCG	1 cut(s)	424
HpyAV	CCTTC	2 cut(s)	97, 223
HpyCH4III	ACNGT	3 cut(s)	140, 161, 184
HpyCH4V	TGCA	4 cut(s)	66, 198, 260, 323
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 266, 542, 545
HpyF3I	CTNAG	1 cut(s)	463
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	4 cut(s)	125, 131, 263, 526
Lsp1109I	GCAGC	6 cut(s)	79, 253, 548, 551, 554, 557
LweI	GCATC	1 cut(s)	79
MaeIII	GTNAC	2 cut(s)	167, 251
MboII	GAAGA	2 cut(s)	89, 238
MluCI	AATT	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	3 cut(s)	401, 431, 452
MnlI	CCTC	4 cut(s)	47, 297, 472, 534
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	51
MspI	CCGG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	46
MwoI	GCNNNNNNNGC	4 cut(s)	125, 266, 542, 545
NdeI	CATATG	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	102
PctI	GAATGC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	503
PkrI	GCNGC	7 cut(s)	7, 94, 268, 538, 541, 544, 547
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PspN4I	GGNNCC	1 cut(s)	522
PspPI	GGNCC	1 cut(s)	34
PsrI	GAACNNNNNNTAC	2 cut(s)	286, 318
PstNI	CAGNNNCTG	1 cut(s)	266
RsaI	GTAC	3 cut(s)	142, 295, 454
RsaNI	GTAC	3 cut(s)	141, 294, 453
RseI	CAYNNNNRTG	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	7 cut(s)	6, 93, 267, 537, 540, 543, 546
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	418
SetI	ASST	6 cut(s)	130, 136, 218, 251, 268, 550
SfaNI	GCATC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	51
Sse9I	AATT	1 cut(s)	334
TaaI	ACNGT	3 cut(s)	140, 161, 184
TasI	AATT	1 cut(s)	334
TatI	WGTACW	2 cut(s)	140, 452
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	5 cut(s)	46, 114, 200, 505, 567
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	7 cut(s)	5, 92, 266, 536, 539, 542, 545
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	520
TspRI	CASTG	5 cut(s)	46, 114, 200, 505, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.