Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007655

Physical Location & Seq

Genomic Coordinates Reverse (-)

4383360 .. 4385626

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1063300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCTGCCTTAGTGTATATTGTGATCTTATTAGCCCTCACTGGCCACTCAAGTGCTACTTATTGCGTATGCAAAGATGGAGTCGGTGATCCAACACTTCAGAAGGCACTGGACTATGCCTGCGGAGCTGGAGCTGACTGCAGTCCAATCCTCCAAAACGGTGTCTGTTACCAGCCCAACACCGTCAAAGATCACTGCAGCTATGCTGTCAACAGTTATTTCCAGAGGAAGGGTCAAACTGCGCAGAGCTGTGATTTTGCAGGTGCTGCTACTCAGAGTCAAACTGCTCCCAGTACCGCAAGTTCGACTTGTGTTTATCCTGCAAGTTCCAGTCAAGCAGGAACTGGCACGCCAACCGCAGGCACACCAACCGGTACACCCACCAACGGCACACCCACCACCCCAACCACCCCAACCACGGTCACACCAACCGGCACACCCACCACCCCAACCACGGGCACAACTCCAACCACGGGCACACCAACCACCGGCACCGGCATCACAACTCCAGGCTCTCCGGCATCAGTGTTCGGAATAAGCCCCACCGGGAGTGGCACTGGAATAGACAATAATGGCGGCACGGCTACCTTGGAAGCCGCAAACCGCCTCTTCTCTCTAGCTTCGGCTTTGTGCTTCACAGCGTTTTTACTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

219

Amino Acids

21.61

Weight (kDa)

5.38

Isoelectric Point (pI)

24.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	21 - 91	1.6e-22	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13830 AT1G13830 AT2G03505 AT2G03505 AT2G03505 AT2G03505
fragaria_vesca	FvH4_4g30140
malus_domestica	MD13G1063300.v1.1 MD13G1172000.v1.1 MD16G1061700.v1.1
prunus_persica	Prupe.1G286200_v2.0.a1
pyrus_communis	pycom13g05560 pycom16g05380
rosa_chinensis	RchiOBHm_Chr4g0438481
rosa_laevigata	RLG00000006360
rosa_multiflora	Rmu_sc0002327.1_g000020
rosa_roxburghii	Rroxscaffold_5G00379490
rosa_rugosa	Rorug04G0310200
rosa_samantha	Rh4AG361000 Rh4BG372300 Rh4CG386300 Rh4DG367100
rosa_wichuraiana	Rw0G006580 Rw0G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	251
Acc16I	TGCGCA	1 cut(s)	243
Acc36I	ACCTGC	1 cut(s)	251
AccB1I	GGYRCC	1 cut(s)	491
AciI	CCGC	6 cut(s)	123, 297, 357, 576, 597, 604
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	43
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	2 cut(s)	295, 376
AfiI	CCNNNNNNNGG	8 cut(s)	229, 359, 386, 418, 454, 455, 473, 488
AgeI	ACCGGT	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	508
AleI	CACNNNNGTG	1 cut(s)	51
AluBI	AGCT	5 cut(s)	128, 134, 201, 249, 620
AluI	AGCT	5 cut(s)	128, 134, 201, 249, 620
AlwI	GGATC	1 cut(s)	83
AlwNI	CAGNNNCTG	2 cut(s)	266, 344
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	3 cut(s)	5, 198, 266
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AsiGI	ACCGGT	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	547
AsuHPI	GGTGA	1 cut(s)	98
BaeGI	GKGCMC	2 cut(s)	461, 479
BalI	TGGCCA	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	491
BbvI	GCAGC	2 cut(s)	210, 253
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	2 cut(s)	403, 597
BciT130I	CCWGG	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	547
BfaI	CTAG	1 cut(s)	617
BfmI	CTRYAG	2 cut(s)	139, 196
BfuAI	ACCTGC	1 cut(s)	251
BisI	GCNGC	5 cut(s)	6, 199, 267, 577, 597
BlsI	GCNGC	5 cut(s)	7, 200, 268, 578, 598
Bme1390I	CCNGG	2 cut(s)	510, 547
BmiI	GGNNCC	1 cut(s)	493
BmrFI	CCNGG	2 cut(s)	510, 547
BmrI	ACTGGG	1 cut(s)	285
BmsI	GCATC	2 cut(s)	507, 530
BmuI	ACTGGG	1 cut(s)	285
BoxI	GACNNNNGTC	1 cut(s)	141
BpmI	CTGGAG	2 cut(s)	150, 492
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	547
BsaJI	CCNNGG	4 cut(s)	417, 453, 471, 588
BsaWI	WCCGGW	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	8 cut(s)	229, 359, 386, 418, 454, 455, 473, 488
Bse118I	RCCGGY	4 cut(s)	371, 431, 488, 494
Bse1I	ACTGG	6 cut(s)	46, 114, 291, 330, 349, 562
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	4 cut(s)	417, 453, 471, 588
BseLI	CCNNNNNNNGG	8 cut(s)	229, 359, 386, 418, 454, 455, 473, 488
BseMII	CTCAG	1 cut(s)	287
BseNI	ACTGG	6 cut(s)	46, 114, 291, 330, 349, 562
BseSI	GKGCMC	2 cut(s)	461, 479
BseXI	GCAGC	2 cut(s)	210, 253
BshFI	GGCC	1 cut(s)	45
BshNI	GGYRCC	1 cut(s)	491
BshTI	ACCGGT	1 cut(s)	371
BsiSI	CCGG	6 cut(s)	372, 432, 489, 495, 518, 546
BslI	CCNNNNNNNGG	8 cut(s)	229, 359, 386, 418, 454, 455, 473, 488
BsnI	GGCC	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	461, 479
Bsp143I	GATC	3 cut(s)	24, 88, 190
BspACI	CCGC	6 cut(s)	123, 297, 357, 576, 597, 604
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	493
BspMAI	CTGCAG	2 cut(s)	143, 200
BspMI	ACCTGC	1 cut(s)	251
BspPI	GGATC	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	491
BsrFI	RCCGGY	4 cut(s)	371, 431, 488, 494
BsrI	ACTGG	6 cut(s)	46, 114, 291, 330, 349, 562
BssAI	RCCGGY	4 cut(s)	371, 431, 488, 494
BssECI	CCNNGG	4 cut(s)	417, 453, 471, 588
BssMI	GATC	3 cut(s)	24, 88, 190
BssT1I	CCWWGG	1 cut(s)	588
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	4 cut(s)	161, 184, 215, 421
Bst6I	CTCTTC	1 cut(s)	614
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	3 cut(s)	121, 350, 361
BstDEI	CTNAG	2 cut(s)	10, 273
BstDSI	CCRYGG	3 cut(s)	417, 453, 471
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	3 cut(s)	27, 91, 193
BstMBI	GATC	3 cut(s)	24, 88, 190
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 266
BstNI	CCWGG	1 cut(s)	510
BstPAI	GACNNNNGTC	1 cut(s)	141
BstSCI	CCNGG	2 cut(s)	508, 545
BstSFI	CTRYAG	2 cut(s)	139, 196
BstSLI	GKGCMC	2 cut(s)	461, 479
BstV1I	GCAGC	2 cut(s)	210, 253
BsuRI	GGCC	1 cut(s)	45
BtgI	CCRYGG	3 cut(s)	417, 453, 471
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	5 cut(s)	39, 107, 193, 531, 555
BveI	ACCTGC	1 cut(s)	251
Cac8I	GCNNGC	3 cut(s)	121, 350, 361
CaiI	CAGNNNCTG	2 cut(s)	266, 344
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	4 cut(s)	371, 431, 488, 494
Csp6I	GTAC	2 cut(s)	294, 375
CspAI	ACCGGT	1 cut(s)	371
CviQI	GTAC	2 cut(s)	294, 375
DdeI	CTNAG	2 cut(s)	10, 273
DpnI	GATC	3 cut(s)	26, 90, 192
DpnII	GATC	3 cut(s)	24, 88, 190
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	614
EarI	CTCTTC	1 cut(s)	614
Eco130I	CCWWGG	1 cut(s)	588
Eco57I	CTGAAG	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	588
FaiI	YATR	4 cut(s)	18, 70, 117, 204
FalI	AAGNNNNNCTT	4 cut(s)	43, 75, 292, 324
Fnu4HI	GCNGC	5 cut(s)	6, 199, 267, 577, 597
Fsp4HI	GCNGC	5 cut(s)	6, 199, 267, 577, 597
FspBI	CTAG	1 cut(s)	617
FspI	TGCGCA	1 cut(s)	243
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	5 cut(s)	6, 199, 267, 577, 597
GsuI	CTGGAG	2 cut(s)	150, 492
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	6 cut(s)	372, 432, 489, 495, 518, 546
HhaI	GCGC	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	81, 277
HpaII	CCGG	6 cut(s)	372, 432, 489, 495, 518, 546
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	211, 377
Hpy188I	TCNGA	3 cut(s)	102, 276, 533
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	2 cut(s)	211, 377
HpyAV	CCTTC	2 cut(s)	97, 223
HpyCH4III	ACNGT	4 cut(s)	161, 184, 215, 421
HpyCH4V	TGCA	5 cut(s)	72, 141, 198, 260, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 266
HpyF3I	CTNAG	2 cut(s)	10, 273
HspAI	GCGC	1 cut(s)	242
Kzo9I	GATC	3 cut(s)	24, 88, 190
LmnI	GCTCC	3 cut(s)	125, 131, 292
Lsp1109I	GCAGC	2 cut(s)	210, 253
LweI	GCATC	2 cut(s)	507, 530
MaeI	CTAG	1 cut(s)	617
MaeIII	GTNAC	2 cut(s)	167, 421
MalI	GATC	3 cut(s)	26, 90, 192
MboI	GATC	3 cut(s)	24, 88, 190
MboII	GAAGA	1 cut(s)	601
MhlI	GDGCHC	2 cut(s)	461, 479
MlsI	TGGCCA	1 cut(s)	45
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	2 cut(s)	90, 286
MmeI	TCCRAC	2 cut(s)	116, 491
MnlI	CCTC	4 cut(s)	47, 161, 219, 617
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	51
Msp20I	TGGCCA	1 cut(s)	45
MspI	CCGG	6 cut(s)	372, 432, 489, 495, 518, 546
MspR9I	CCNGG	2 cut(s)	510, 547
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	2 cut(s)	125, 266
NciI	CCSGG	1 cut(s)	547
NdeII	GATC	3 cut(s)	24, 88, 190
NlaIV	GGNNCC	1 cut(s)	493
NmuCI	GTSAC	1 cut(s)	421
NsbI	TGCGCA	1 cut(s)	243
OliI	CACNNNNGTG	1 cut(s)	51
PaqCI	CACCTGC	1 cut(s)	251
PinAI	ACCGGT	1 cut(s)	371
PkrI	GCNGC	5 cut(s)	7, 200, 268, 578, 598
PleI	GAGTC	2 cut(s)	89, 285
PpsI	GAGTC	2 cut(s)	89, 285
PshAI	GACNNNNGTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	1 cut(s)	493
PsrI	GAACNNNNNNTAC	2 cut(s)	286, 318
PstI	CTGCAG	2 cut(s)	143, 200
PstNI	CAGNNNCTG	2 cut(s)	266, 344
RsaI	GTAC	2 cut(s)	295, 376
RsaNI	GTAC	2 cut(s)	294, 375
RseI	CAYNNNNRTG	1 cut(s)	51
SatI	GCNGC	5 cut(s)	6, 199, 267, 577, 597
Sau3AI	GATC	3 cut(s)	24, 88, 190
SchI	GAGTC	2 cut(s)	90, 286
ScrFI	CCNGG	2 cut(s)	510, 547
SduI	GDGCHC	2 cut(s)	461, 479
SetI	ASST	7 cut(s)	130, 136, 203, 251, 265, 590, 622
SfaNI	GCATC	2 cut(s)	507, 530
SfcI	CTRYAG	2 cut(s)	139, 196
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
SsiI	CCGC	6 cut(s)	123, 297, 357, 576, 597, 604
SspMI	CTAG	1 cut(s)	617
StyD4I	CCNGG	2 cut(s)	508, 545
StyI	CCWWGG	1 cut(s)	588
TaaI	ACNGT	4 cut(s)	161, 184, 215, 421
TaqI	TCGA	1 cut(s)	305
TauI	GCSGC	2 cut(s)	579, 599
TscAI	CASTG	5 cut(s)	46, 114, 200, 531, 562
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	3 cut(s)	5, 198, 266
Tsp45I	GTSAC	1 cut(s)	421
TspRI	CASTG	5 cut(s)	46, 114, 200, 531, 562
XspI	CTAG	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.