RLG00000006360

Glucan endo-1,3-beta-glucosidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007655
Physical Location & Seq
Forward (+)
6499069 .. 6500599
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006360

Sequence Viewer

Length: 570 bp
ATGGCTGCTTTAGTATATATAGTGCTTTTCTTGGCCCTCACTGGGCATTCAAGTGCTACTTATTGCATATGTAAAGATGGGGTTGGTGATGCTGCTCTTCAGAAGGCACTGGACTATGCTTGTGGAGCGGGAGCTGACTGTACACCAATCCTTCAAAACGGTGCGTGTTACAACCCCAACACAGTTAAAGACCACTGCAACTGGGCTGTTAATAGCTATTACCAGAAGAAGGGTCAAACCCAAATGAGCTGTGACTTTGCAGGAGCTGCCACTATTAGCCAAACTCCTCCAAGTACCACGAGTTCCAGTTGTGTTTATCCTGCAAGTGGCAGTACTTCCACCACAAACTCAAGCACCACAACTCCAAGCACAACACCAACCACAACTCCAACCACCGGCGGCACGACAACTCCAACCACAGGCACAACAACCCCCAGTACAACTCCCTCAGTCTTTGGAATAAGCCCAACAGGGAGTTCACTCACTGATTCAAGCCCTGATATGGTTCCTCACTTCATCGCAGCAGCAGCAGCTTTCTCCTTTTCAGTGTTTTTGTTGCTGTGGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

190

Amino Acids

19.26

Weight (kDa)

5.25

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 21 - 91 3.7e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 128
AciI CCGC 2 cut(s) 128, 399
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 4 cut(s) 142, 295, 334, 439
AfiI CCNNNNNNNGG 6 cut(s) 42, 229, 326, 395, 419, 502
AgsI TTSAA 3 cut(s) 51, 155, 492
AjuI GAANNNNNNNTTGG 2 cut(s) 460, 492
AluBI AGCT 5 cut(s) 134, 216, 249, 266, 533
AluI AGCT 5 cut(s) 134, 216, 249, 266, 533
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 7 cut(s) 5, 92, 266, 521, 524, 527, 530
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 98
BauI CACGAG 1 cut(s) 298
BbvI GCAGC 6 cut(s) 79, 253, 533, 536, 539, 542
BccI CCATC 1 cut(s) 71
BisI GCNGC 8 cut(s) 6, 93, 267, 400, 522, 525, 528, 531
BlsI GCNGC 8 cut(s) 7, 94, 268, 401, 523, 526, 529, 532
BmcAI AGTACT 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 507
BmrI ACTGGG 3 cut(s) 51, 211, 429
BmsI GCATC 1 cut(s) 79
BmuI ACTGGG 3 cut(s) 51, 211, 429
BpuEI CTTGAG 1 cut(s) 334
BsaXI ACNNNNNCTCC 6 cut(s) 346, 370, 376, 394, 400, 424
Bsc4I CCNNNNNNNGG 6 cut(s) 42, 229, 326, 395, 419, 502
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 5 cut(s) 46, 114, 206, 306, 435
BseLI CCNNNNNNNGG 6 cut(s) 42, 229, 326, 395, 419, 502
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 5 cut(s) 46, 114, 206, 306, 435
BseRI GAGGAG 1 cut(s) 276
BseXI GCAGC 6 cut(s) 79, 253, 533, 536, 539, 542
BshFI GGCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 396
BslI CCNNNNNNNGG 6 cut(s) 42, 229, 326, 395, 419, 502
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 1 cut(s) 35
Bsp1407I TGTACA 1 cut(s) 140
BspACI CCGC 2 cut(s) 128, 399
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 461
BspLI GGNNCC 1 cut(s) 507
BspQI GCTCTTC 1 cut(s) 102
BsrBI CCGCTC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 395
BsrGI TGTACA 1 cut(s) 140
BsrI ACTGG 5 cut(s) 46, 114, 206, 306, 435
BssAI RCCGGY 1 cut(s) 395
BssSI CACGAG 1 cut(s) 298
Bst2BI CACGAG 1 cut(s) 298
Bst4CI ACNGT 3 cut(s) 140, 161, 184
Bst6I CTCTTC 1 cut(s) 102
BstAPI GCANNNNNTGC 1 cut(s) 266
BstAUI TGTACA 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 448
BstMWI GCNNNNNNNGC 4 cut(s) 125, 266, 527, 530
BstV1I GCAGC 6 cut(s) 79, 253, 533, 536, 539, 542
BsuRI GGCC 1 cut(s) 35
BtgZI GCGATG 1 cut(s) 502
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 5 cut(s) 39, 107, 193, 483, 552
CaiI CAGNNNCTG 1 cut(s) 266
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 4 cut(s) 141, 294, 333, 438
CviQI GTAC 4 cut(s) 141, 294, 333, 438
DdeI CTNAG 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 83
FaiI YATR 7 cut(s) 16, 18, 20, 68, 70, 117, 503
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FauI CCCGC 1 cut(s) 121
FauNDI CATATG 1 cut(s) 68
Fnu4HI GCNGC 8 cut(s) 6, 93, 267, 400, 522, 525, 528, 531
Fsp4HI GCNGC 8 cut(s) 6, 93, 267, 400, 522, 525, 528, 531
GluI GCNGC 8 cut(s) 6, 93, 267, 400, 522, 525, 528, 531
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 396
HinfI GANTC 1 cut(s) 488
HpaII CCGG 1 cut(s) 396
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 2 cut(s) 143, 479
Hpy188I TCNGA 1 cut(s) 102
Hpy8I GTNNAC 2 cut(s) 143, 479
HpyAV CCTTC 3 cut(s) 97, 161, 223
HpyCH4III ACNGT 3 cut(s) 140, 161, 184
HpyCH4V TGCA 4 cut(s) 66, 198, 260, 323
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 266, 527, 530
HpyF3I CTNAG 1 cut(s) 448
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 3 cut(s) 125, 131, 263
Lsp1109I GCAGC 6 cut(s) 79, 253, 533, 536, 539, 542
LweI GCATC 1 cut(s) 79
MaeIII GTNAC 2 cut(s) 167, 251
MbiI CCGCTC 1 cut(s) 128
MboII GAAGA 2 cut(s) 89, 238
MmeI TCCRAC 2 cut(s) 413, 437
MnlI CCTC 4 cut(s) 47, 297, 457, 519
MseI TTAA 2 cut(s) 186, 210
MslI CAYNNNNRTG 1 cut(s) 51
MspI CCGG 1 cut(s) 396
Mva1269I GAATGC 1 cut(s) 46
MwoI GCNNNNNNNGC 4 cut(s) 125, 266, 527, 530
NdeI CATATG 1 cut(s) 68
NlaIV GGNNCC 1 cut(s) 507
NmuCI GTSAC 1 cut(s) 251
PciSI GCTCTTC 1 cut(s) 102
PctI GAATGC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 488
PkrI GCNGC 8 cut(s) 7, 94, 268, 401, 523, 526, 529, 532
PspN4I GGNNCC 1 cut(s) 507
PspPI GGNCC 1 cut(s) 34
PsrI GAACNNNNNNTAC 2 cut(s) 286, 318
PstNI CAGNNNCTG 1 cut(s) 266
RsaI GTAC 4 cut(s) 142, 295, 334, 439
RsaNI GTAC 4 cut(s) 141, 294, 333, 438
RseI CAYNNNNRTG 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 186, 210
SatI GCNGC 8 cut(s) 6, 93, 267, 400, 522, 525, 528, 531
Sau96I GGNCC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 334
SetI ASST 5 cut(s) 136, 218, 251, 268, 535
SfaNI GCATC 1 cut(s) 79
SgrAI CRCCGGYG 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
SsiI CCGC 2 cut(s) 128, 399
TaaI ACNGT 3 cut(s) 140, 161, 184
TatI WGTACW 3 cut(s) 140, 332, 437
TauI GCSGC 1 cut(s) 402
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 2 cut(s) 186, 210
Tru9I TTAA 2 cut(s) 186, 210
TscAI CASTG 5 cut(s) 46, 114, 200, 490, 552
TseFI GTSAC 1 cut(s) 251
TseI GCWGC 7 cut(s) 5, 92, 266, 521, 524, 527, 530
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 505
TspRI CASTG 5 cut(s) 46, 114, 200, 490, 552
ZrmI AGTACT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.