MD13G1172000.v1.1

Glucan endo-1,3-beta-glucosidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0007655
Physical Location & Seq
Reverse (-)
14080774 .. 14080947
174 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1172000.v1.1.491

Sequence Viewer

Length: 174 bp
ATGGCTGTTTTACTGTATATTGTGACCTTATTAGCCCTCACTGGCCACTCGAGTGCTACTTATTGCGTATGCAAAGATGAAGTCGGTGATGCAACACTTCAGAAGGCACTGGACTATGCCTGTGGAGCTAGAGCTAACTGCAGTCCAATCAACCAAAATGGTGCGTGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

58

Amino Acids

5.99

Weight (kDa)

5.41

Isoelectric Point (pI)

33.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 21 - 57 9.8e-08 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 43
AcuI CTGAAG 1 cut(s) 83
AleI CACNNNNGTG 1 cut(s) 51
AluBI AGCT 2 cut(s) 128, 134
AluI AGCT 2 cut(s) 128, 134
Ama87I CYCGRG 1 cut(s) 49
AoxI GGCC 1 cut(s) 43
ArsI GACNNNNNNTTYG 2 cut(s) 66, 98
AsuHPI GGTGA 1 cut(s) 98
AvaI CYCGRG 1 cut(s) 49
BalI TGGCCA 1 cut(s) 45
BfaI CTAG 2 cut(s) 129, 172
BfmI CTRYAG 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 49
BmsI GCATC 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 46, 114
BseNI ACTGG 2 cut(s) 46, 114
BshFI GGCC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 49
BsnI GGCC 1 cut(s) 45
BsoBI CYCGRG 1 cut(s) 49
BspANI GGCC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 143
BsrI ACTGG 2 cut(s) 46, 114
Bst4CI ACNGT 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstSFI CTRYAG 1 cut(s) 139
BsuRI GGCC 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 39, 107
CviJI RGCY 5 cut(s) 5, 35, 45, 128, 134
CviKI_1 RGCY 5 cut(s) 5, 35, 45, 128, 134
EaeI YGGCCR 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 49
FaiI YATR 3 cut(s) 18, 70, 117
FspBI CTAG 2 cut(s) 129, 172
HaeIII GGCC 1 cut(s) 45
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 72, 92, 141
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 3 cut(s) 27, 95, 133
LweI GCATC 1 cut(s) 79
MaeI CTAG 2 cut(s) 129, 172
MaeIII GTNAC 2 cut(s) 22, 167
MlsI TGGCCA 1 cut(s) 45
MluNI TGGCCA 1 cut(s) 45
MnlI CCTC 1 cut(s) 47
Mox20I TGGCCA 1 cut(s) 45
MscI TGGCCA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 51
Msp20I TGGCCA 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 22
OliI CACNNNNGTG 1 cut(s) 51
PaeR7I CTCGAG 1 cut(s) 49
PspXI VCTCGAGB 1 cut(s) 49
PstI CTGCAG 1 cut(s) 143
RseI CAYNNNNRTG 1 cut(s) 51
SetI ASST 3 cut(s) 29, 130, 136
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 139
Sfr274I CTCGAG 1 cut(s) 49
SgeI CNNG 6 cut(s) 54, 61, 63, 122, 132, 141
SlaI CTCGAG 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
SspMI CTAG 2 cut(s) 129, 172
TaaI ACNGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 50
TscAI CASTG 2 cut(s) 46, 114
TseFI GTSAC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 93
TspRI CASTG 2 cut(s) 46, 114
XhoI CTCGAG 1 cut(s) 49
XspI CTAG 2 cut(s) 129, 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.