Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007655

Physical Location & Seq

Genomic Coordinates Reverse (-)

59844887 .. 59846957

Gene Structure 2071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTGCTTTAGCATATATAGTGCTTTTCTTGGCCCTCTCTGGGCATTCAAGTGCTACTTATTGCATATGTAAAGATGGGGTTGGTGATGCTACTCTTCAGAAGGCACTGGACTATGCTTGTGGAGCGGGAGCTGACTGTACACCAATTCTTCAAAACGGTGCGTGTTACAACCCCAACACAGTCAAAGACCACTGCAACTGGGCTGTTAATAGCTATTTCCAGAAGAAGGGTCAAACCCAAATGAGCTGTGACTTTGCAGGAGCTGCCACTATTAGCCAAACTCCTCCAAGTACCACGAGTTCCAGTTGTGTTTATCCTGCAAGTGGCAATACTTCCAGCACAACACCAAGCACAACTCCAACCACAGGCGCAACCCCAACCACAACTCCAACCACCGGCACGACGACTCCAACCACAGGCACAACAACCCCCAGTACAACTCCCTCAGTCTTTGGAATAAGCCCAACAGGGAGTTCACTCACTGATTCAAGCCCTGATATGGCTCCTCACTTCATCGCAGCAGCAGCAGCTTTCTCCTTTTCAGTGTTTTTGTTGCTGTGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

189

Amino Acids

19.2

Weight (kDa)

5.25

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	21 - 91	1.2e-21	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13830 AT1G13830 AT2G03505 AT2G03505 AT2G03505 AT2G03505
fragaria_vesca	FvH4_4g30140
malus_domestica	MD13G1063300.v1.1 MD13G1172000.v1.1 MD16G1061700.v1.1
prunus_persica	Prupe.1G286200_v2.0.a1
pyrus_communis	pycom13g05560 pycom16g05380
rosa_chinensis	RchiOBHm_Chr4g0438481
rosa_laevigata	RLG00000006360
rosa_multiflora	Rmu_sc0002327.1_g000020
rosa_roxburghii	Rroxscaffold_5G00379490
rosa_rugosa	Rorug04G0310200
rosa_samantha	Rh4AG361000 Rh4BG372300 Rh4CG386300 Rh4DG367100
rosa_wichuraiana	Rw0G006580 Rw0G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	128
AciI	CCGC	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	3 cut(s)	142, 295, 439
AfiI	CCNNNNNNNGG	7 cut(s)	42, 229, 326, 368, 398, 419, 502
AgsI	TTSAA	3 cut(s)	51, 155, 492
AjuI	GAANNNNNNNTTGG	2 cut(s)	460, 492
AluBI	AGCT	5 cut(s)	134, 216, 249, 266, 533
AluI	AGCT	5 cut(s)	134, 216, 249, 266, 533
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	6 cut(s)	5, 266, 521, 524, 527, 530
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	98
BauI	CACGAG	1 cut(s)	298
BbvI	GCAGC	5 cut(s)	253, 533, 536, 539, 542
BccI	CCATC	1 cut(s)	71
BisI	GCNGC	6 cut(s)	6, 267, 522, 525, 528, 531
BlsI	GCNGC	6 cut(s)	7, 268, 523, 526, 529, 532
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	507
BmrI	ACTGGG	2 cut(s)	211, 429
BmsI	GCATC	1 cut(s)	79
BmuI	ACTGGG	2 cut(s)	211, 429
BsaXI	ACNNNNNCTCC	4 cut(s)	373, 394, 403, 424
Bsc4I	CCNNNNNNNGG	7 cut(s)	42, 229, 326, 368, 398, 419, 502
Bse118I	RCCGGY	1 cut(s)	398
Bse1I	ACTGG	4 cut(s)	114, 206, 306, 435
BseLI	CCNNNNNNNGG	7 cut(s)	42, 229, 326, 368, 398, 419, 502
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	4 cut(s)	114, 206, 306, 435
BseRI	GAGGAG	2 cut(s)	276, 498
BseXI	GCAGC	5 cut(s)	253, 533, 536, 539, 542
BshFI	GGCC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	399
BslI	CCNNNNNNNGG	7 cut(s)	42, 229, 326, 368, 398, 419, 502
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	35
Bsp1407I	TGTACA	1 cut(s)	140
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	461
BspLI	GGNNCC	1 cut(s)	507
BsrBI	CCGCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	140
BsrI	ACTGG	4 cut(s)	114, 206, 306, 435
BssAI	RCCGGY	1 cut(s)	398
BssSI	CACGAG	1 cut(s)	298
Bst2BI	CACGAG	1 cut(s)	298
Bst4CI	ACNGT	3 cut(s)	140, 161, 184
Bst6I	CTCTTC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstAUI	TGTACA	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	374
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 125, 266, 527, 530
BstV1I	GCAGC	5 cut(s)	253, 533, 536, 539, 542
BsuRI	GGCC	1 cut(s)	35
BtgZI	GCGATG	1 cut(s)	502
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	4 cut(s)	107, 193, 483, 552
CaiI	CAGNNNCTG	1 cut(s)	266
CfoI	GCGC	1 cut(s)	374
Cfr10I	RCCGGY	1 cut(s)	398
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	3 cut(s)	141, 294, 438
CviQI	GTAC	3 cut(s)	141, 294, 438
DdeI	CTNAG	1 cut(s)	448
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	83
FaiI	YATR	7 cut(s)	16, 18, 20, 68, 70, 117, 503
FalI	AAGNNNNNCTT	2 cut(s)	43, 75
FauI	CCCGC	1 cut(s)	121
FauNDI	CATATG	1 cut(s)	68
Fnu4HI	GCNGC	6 cut(s)	6, 267, 522, 525, 528, 531
Fsp4HI	GCNGC	6 cut(s)	6, 267, 522, 525, 528, 531
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	6 cut(s)	6, 267, 522, 525, 528, 531
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	399
HhaI	GCGC	1 cut(s)	374
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HinfI	GANTC	2 cut(s)	409, 488
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	143, 479
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	2 cut(s)	143, 479
Hpy99I	CGWCG	1 cut(s)	409
HpyAV	CCTTC	2 cut(s)	97, 223
HpyCH4III	ACNGT	3 cut(s)	140, 161, 184
HpyCH4V	TGCA	4 cut(s)	66, 198, 260, 323
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 125, 266, 527, 530
HpyF3I	CTNAG	1 cut(s)	448
HspAI	GCGC	1 cut(s)	372
LmnI	GCTCC	4 cut(s)	125, 131, 263, 511
Lsp1109I	GCAGC	5 cut(s)	253, 533, 536, 539, 542
LweI	GCATC	1 cut(s)	79
MaeIII	GTNAC	2 cut(s)	167, 251
MbiI	CCGCTC	1 cut(s)	128
MboII	GAAGA	3 cut(s)	89, 143, 238
MluCI	AATT	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	403
MmeI	TCCRAC	3 cut(s)	386, 416, 437
MnlI	CCTC	4 cut(s)	47, 297, 457, 519
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	51
MspI	CCGG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	46
MwoI	GCNNNNNNNGC	5 cut(s)	11, 125, 266, 527, 530
NdeI	CATATG	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	507
NmuCI	GTSAC	1 cut(s)	251
PctI	GAATGC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	488
PkrI	GCNGC	6 cut(s)	7, 268, 523, 526, 529, 532
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	507
PspPI	GGNCC	1 cut(s)	34
PsrI	GAACNNNNNNTAC	2 cut(s)	286, 318
PstNI	CAGNNNCTG	1 cut(s)	266
RsaI	GTAC	3 cut(s)	142, 295, 439
RsaNI	GTAC	3 cut(s)	141, 294, 438
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	6 cut(s)	6, 267, 522, 525, 528, 531
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	403
SetI	ASST	5 cut(s)	136, 218, 251, 268, 535
SfaNI	GCATC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	51
Sse9I	AATT	1 cut(s)	147
SsiI	CCGC	1 cut(s)	128
TaaI	ACNGT	3 cut(s)	140, 161, 184
TasI	AATT	1 cut(s)	147
TatI	WGTACW	2 cut(s)	140, 437
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	4 cut(s)	114, 200, 490, 552
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	6 cut(s)	5, 266, 521, 524, 527, 530
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	505
TspRI	CASTG	4 cut(s)	114, 200, 490, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.