Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002327.1

Orthogroup ID

OG0007655

Physical Location & Seq

Genomic Coordinates Forward (+)

60616 .. 62155

Gene Structure 1540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002327.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atggctgctttagtatatatagtacttttcttggccctcactgggcattcaagtgctacttattgcatatgtaaagatggggttggtgatgctactcttcagaaggcactggactatgcttgtggagcgggagctgactgtacaccaatccttcaaaacggtgcgtgttacaaccccaacacagtcaaagaccactgcaactgggctgttaatagctatttccagaagaagggtcaaacccaaatgagctgtgactttgcaggagctgccactattacccaaactcctccaactaccacgagttccacttgtgtttatcctgcaagtggcagtacttccaccacaaactcaagcaccactactccaagcacaacaccaagcacaactccaaccacaggcacaacgccaaccacaactccaaccacaggcacaacaacccccagtacaactccctcagtctttggaataagtccaacagggagttcactcactgattcaagccctgatatggctcctcacttcatcgcagcagcagcagctttctccttttcagtgttcttgttgctgtggggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

191

Amino Acids

19.52

Weight (kDa)

5.25

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13830 AT1G13830 AT2G03505 AT2G03505 AT2G03505 AT2G03505
fragaria_vesca	FvH4_4g30140
malus_domestica	MD13G1063300.v1.1 MD13G1172000.v1.1 MD16G1061700.v1.1
prunus_persica	Prupe.1G286200_v2.0.a1
pyrus_communis	pycom13g05560 pycom16g05380
rosa_chinensis	RchiOBHm_Chr4g0438481
rosa_laevigata	RLG00000006360
rosa_multiflora	Rmu_sc0002327.1_g000020
rosa_roxburghii	Rroxscaffold_5G00379490
rosa_rugosa	Rorug04G0310200
rosa_samantha	Rh4AG361000 Rh4BG372300 Rh4CG386300 Rh4DG367100
rosa_wichuraiana	Rw0G006580 Rw0G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	128
AciI	CCGC	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	4 cut(s)	24, 142, 334, 445
AfiI	CCNNNNNNNGG	6 cut(s)	42, 229, 326, 395, 425, 508
AgsI	TTSAA	3 cut(s)	51, 155, 498
AjuI	GAANNNNNNNTTGG	2 cut(s)	466, 498
AluBI	AGCT	5 cut(s)	134, 216, 249, 266, 539
AluI	AGCT	5 cut(s)	134, 216, 249, 266, 539
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	6 cut(s)	5, 266, 527, 530, 533, 536
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	98
BauI	CACGAG	1 cut(s)	298
BbvI	GCAGC	5 cut(s)	253, 539, 542, 545, 548
BccI	CCATC	1 cut(s)	71
BisI	GCNGC	6 cut(s)	6, 267, 528, 531, 534, 537
BlsI	GCNGC	6 cut(s)	7, 268, 529, 532, 535, 538
BmcAI	AGTACT	2 cut(s)	24, 334
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	513
BmrI	ACTGGG	3 cut(s)	51, 211, 435
BmsI	GCATC	1 cut(s)	79
BmuI	ACTGGG	3 cut(s)	51, 211, 435
BpuEI	CTTGAG	1 cut(s)	334
BsaXI	ACNNNNNCTCC	6 cut(s)	268, 298, 346, 376, 400, 430
Bsc4I	CCNNNNNNNGG	6 cut(s)	42, 229, 326, 395, 425, 508
Bse1I	ACTGG	4 cut(s)	46, 114, 206, 441
BseLI	CCNNNNNNNGG	6 cut(s)	42, 229, 326, 395, 425, 508
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	4 cut(s)	46, 114, 206, 441
BseRI	GAGGAG	2 cut(s)	276, 504
BseXI	GCAGC	5 cut(s)	253, 539, 542, 545, 548
BshFI	GGCC	1 cut(s)	35
BslI	CCNNNNNNNGG	6 cut(s)	42, 229, 326, 395, 425, 508
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	35
Bsp1407I	TGTACA	1 cut(s)	140
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	467
BspLI	GGNNCC	1 cut(s)	513
BsrBI	CCGCTC	1 cut(s)	128
BsrGI	TGTACA	1 cut(s)	140
BsrI	ACTGG	4 cut(s)	46, 114, 206, 441
BssSI	CACGAG	1 cut(s)	298
Bst2BI	CACGAG	1 cut(s)	298
Bst4CI	ACNGT	3 cut(s)	140, 161, 184
Bst6I	CTCTTC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstAUI	TGTACA	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	454
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 266, 533, 536
BstV1I	GCAGC	5 cut(s)	253, 539, 542, 545, 548
BsuRI	GGCC	1 cut(s)	35
BtgZI	GCGATG	1 cut(s)	508
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	5 cut(s)	39, 107, 193, 489, 558
CaiI	CAGNNNCTG	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	4 cut(s)	23, 141, 333, 444
CviQI	GTAC	4 cut(s)	23, 141, 333, 444
DdeI	CTNAG	1 cut(s)	454
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	83
FaiI	YATR	7 cut(s)	16, 18, 20, 68, 70, 117, 509
FalI	AAGNNNNNCTT	2 cut(s)	43, 75
FauI	CCCGC	1 cut(s)	121
FauNDI	CATATG	1 cut(s)	68
Fnu4HI	GCNGC	6 cut(s)	6, 267, 528, 531, 534, 537
Fsp4HI	GCNGC	6 cut(s)	6, 267, 528, 531, 534, 537
GluI	GCNGC	6 cut(s)	6, 267, 528, 531, 534, 537
HaeIII	GGCC	1 cut(s)	35
HinfI	GANTC	1 cut(s)	494
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	143, 485
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	2 cut(s)	143, 485
HpyAV	CCTTC	3 cut(s)	97, 161, 223
HpyCH4III	ACNGT	3 cut(s)	140, 161, 184
HpyCH4V	TGCA	4 cut(s)	66, 198, 260, 323
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 266, 533, 536
HpyF3I	CTNAG	1 cut(s)	454
LmnI	GCTCC	4 cut(s)	125, 131, 263, 517
Lsp1109I	GCAGC	5 cut(s)	253, 539, 542, 545, 548
LweI	GCATC	1 cut(s)	79
MaeIII	GTNAC	2 cut(s)	167, 251
MbiI	CCGCTC	1 cut(s)	128
MboII	GAAGA	2 cut(s)	89, 238
MmeI	TCCRAC	4 cut(s)	314, 413, 443, 497
MnlI	CCTC	4 cut(s)	47, 297, 463, 525
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	46
MwoI	GCNNNNNNNGC	4 cut(s)	125, 266, 533, 536
NdeI	CATATG	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	1 cut(s)	251
PctI	GAATGC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	494
PkrI	GCNGC	6 cut(s)	7, 268, 529, 532, 535, 538
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	266
RsaI	GTAC	4 cut(s)	24, 142, 334, 445
RsaNI	GTAC	4 cut(s)	23, 141, 333, 444
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	6 cut(s)	6, 267, 528, 531, 534, 537
Sau96I	GGNCC	1 cut(s)	34
ScaI	AGTACT	2 cut(s)	24, 334
SetI	ASST	5 cut(s)	136, 218, 251, 268, 541
SfaNI	GCATC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
SsiI	CCGC	1 cut(s)	128
TaaI	ACNGT	3 cut(s)	140, 161, 184
TatI	WGTACW	4 cut(s)	22, 140, 332, 443
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	5 cut(s)	46, 114, 200, 496, 558
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	6 cut(s)	5, 266, 527, 530, 533, 536
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	511
TspRI	CASTG	5 cut(s)	46, 114, 200, 496, 558
ZrmI	AGTACT	2 cut(s)	24, 334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.