AT1G14150

Oxygen evolving enhancer protein 3 (PsbQ)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012021
Physical Location & Seq
Forward (+)
4839801 .. 4840823
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14150.1

Sequence Viewer

Length: 573 bp
ATGAGCTCCTTCACCACCACCAACACTCCGCCACCGTATCTCCTCCGGAAAATTTATCATCGCCGTGTAAACCAACCGTTCTCCGTCGTATGTTGCACCGGAGAACCCCAACAAGACATCTTCACCCGCCGGAGAACCTTGACTTCACTAATAACATTCACGGTCATCGGCGGTGCTACGTCATCAGCATTAGCACAGGAGAAATGGGGGACAAGGTCATTCATAAAGGAGAAATATTTTATGCCGGGACTATCACCTGAGGATGCGGCGGCGCGTATAAAACAGACGGCTGAAGGATTAAGAGACATGAGGGAGATGTTGGACCACATGTCGTGGAGGTACGTTATATTCTACATAAGATTGAAACAGGCTTATCTGTCTCAGGATCTCACCAACGCCATGAACATCTTGCCGGAGAGTCGCCGGAATGATTACGTTCAGGCGGCAAACGAGCTTGTCGAAAACATGAGTGAGTTGGATTTCTATGTACGGACGCCAAAGGTGTACGAGTCCTATCTTTACTACGAGAAGACATTGAAATCGATAGACAATGTTGTGGAGTTTCTTGCTTAA

Protein Analysis

190

Amino Acids

22.16

Weight (kDa)

8.8

Isoelectric Point (pI)

63.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbQ PF05757 20 - 190 1.2e-33 Oxygen evolving enhancer protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14150 AT1G14150
fragaria_vesca FvH4_4g31100
malus_domestica MD13G1069500.v1.1 MD16G1069900.v1.1
prunus_persica Prupe.1G277200_v2.0.a1
pyrus_communis pycom13g06240 pycom16g06090
rosa_chinensis RchiOBHm_Chr4g0439481
rosa_laevigata RLG00000006267
rosa_multiflora Rmu_sc0007276.1_g000007 Rmu_sc0032911.1_g000001
rosa_roxburghii Rroxscaffold_5G00380390
rosa_rugosa Rorug04G0318600
rosa_samantha Rh4AG370100 Rh4BG381900 Rh4CG396500 Rh4DG376600
rosa_wichuraiana Rw4G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 274
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 6 cut(s) 29, 127, 171, 266, 269, 443
AclWI GGATC 1 cut(s) 393
AcsI RAATTY 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 494
AfaI GTAC 3 cut(s) 341, 489, 506
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 2 cut(s) 364, 538
AhdI GACNNNNNGTC 1 cut(s) 328
AluBI AGCT 2 cut(s) 6, 454
AluI AGCT 2 cut(s) 6, 454
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 297, 384
AlwI GGATC 1 cut(s) 393
Aor13HI TCCGGA 1 cut(s) 45
ApoI RAATTY 1 cut(s) 51
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 322
AsuC2I CCSGG 1 cut(s) 246
AsuHPI GGTGA 4 cut(s) 4, 115, 246, 382
AvaII GGWCC 1 cut(s) 322
AxyI CCTNAGG 1 cut(s) 258
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 536
Bbv12I GWGCWC 1 cut(s) 8
BceAI ACGGC 2 cut(s) 48, 303
BcnI CCSGG 1 cut(s) 246
BcoDI GTCTC 2 cut(s) 297, 384
BisI GCNGC 3 cut(s) 267, 270, 444
BlsI GCNGC 3 cut(s) 268, 271, 445
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 1 cut(s) 322
BmeRI GACNNNNNGTC 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 536
BpuMI CCSGG 1 cut(s) 246
Bsa29I ATCGAT 1 cut(s) 542
BsaHI GRCGYC 1 cut(s) 494
BsaWI WCCGGW 2 cut(s) 45, 98
BsaXI ACNNNNNCTCC 4 cut(s) 10, 24, 40, 54
Bse21I CCTNAGG 1 cut(s) 258
BseAI TCCGGA 1 cut(s) 45
BseCI ATCGAT 1 cut(s) 542
BseGI GGATG 1 cut(s) 268
BseMII CTCAG 2 cut(s) 249, 395
BseRI GAGGAG 1 cut(s) 32
Bsh1236I CGCG 1 cut(s) 274
BshVI ATCGAT 1 cut(s) 542
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 6 cut(s) 46, 99, 130, 245, 413, 424
BslFI GGGAC 2 cut(s) 223, 261
BsmAI GTCTC 2 cut(s) 297, 384
BsmFI GGGAC 2 cut(s) 223, 261
Bsp1286I GDGCHC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 45
Bsp143I GATC 1 cut(s) 385
BspACI CCGC 6 cut(s) 29, 127, 171, 266, 269, 443
BspCNI CTCAG 2 cut(s) 250, 394
BspDI ATCGAT 1 cut(s) 542
BspEI TCCGGA 1 cut(s) 45
BspFNI CGCG 1 cut(s) 274
BspPI GGATC 1 cut(s) 393
BssMI GATC 1 cut(s) 385
BssNI GRCGYC 1 cut(s) 494
Bst4CI ACNGT 3 cut(s) 36, 78, 163
BstACI GRCGYC 1 cut(s) 494
BstDEI CTNAG 2 cut(s) 258, 381
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 1 cut(s) 274
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 1 cut(s) 388
BstMAI GTCTC 2 cut(s) 297, 384
BstMBI GATC 1 cut(s) 385
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 1 cut(s) 244
BstUI CGCG 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 536
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
Bsu15I ATCGAT 1 cut(s) 542
Bsu36I CCTNAGG 1 cut(s) 258
BsuTUI ATCGAT 1 cut(s) 542
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 268
CfoI GCGC 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 322
ClaI ATCGAT 1 cut(s) 542
CseI GACGC 1 cut(s) 502
Csp6I GTAC 3 cut(s) 340, 488, 505
CviAII CATG 4 cut(s) 307, 328, 400, 466
CviJI RGCY 4 cut(s) 6, 290, 371, 454
CviKI_1 RGCY 4 cut(s) 6, 290, 371, 454
CviQI GTAC 3 cut(s) 340, 488, 505
DdeI CTNAG 2 cut(s) 258, 381
DpnI GATC 1 cut(s) 387
DpnII GATC 1 cut(s) 385
DriI GACNNNNNGTC 1 cut(s) 328
Eam1105I GACNNNNNGTC 1 cut(s) 328
EciI GGCGGA 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 322
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 312
Eco81I CCTNAGG 1 cut(s) 258
EcoICRI GAGCTC 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 4 cut(s) 310, 331, 403, 469
FaqI GGGAC 2 cut(s) 223, 261
FatI CATG 4 cut(s) 306, 327, 399, 465
FauI CCCGC 1 cut(s) 134
Fnu4HI GCNGC 3 cut(s) 267, 270, 444
FokI GGATG 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 267, 270, 444
GlaI GCGC 1 cut(s) 273
GluI GCNGC 3 cut(s) 267, 270, 444
HapII CCGG 6 cut(s) 46, 99, 130, 245, 413, 424
HgaI GACGC 1 cut(s) 502
HhaI GCGC 1 cut(s) 274
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 4 cut(s) 310, 331, 403, 469
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HinfI GANTC 2 cut(s) 418, 509
HpaII CCGG 6 cut(s) 46, 99, 130, 245, 413, 424
HphI GGTGA 4 cut(s) 4, 115, 246, 382
Hpy166II GTNNAC 2 cut(s) 70, 505
Hpy188III TCNNGA 2 cut(s) 46, 383
Hpy8I GTNNAC 2 cut(s) 70, 505
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 19, 287
HpyCH4III ACNGT 3 cut(s) 36, 78, 163
HpyCH4IV ACGT 3 cut(s) 179, 342, 435
HpyCH4V TGCA 1 cut(s) 96
HpyF3I CTNAG 2 cut(s) 258, 381
HpySE526I ACGT 3 cut(s) 179, 342, 435
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 4 cut(s) 310, 331, 403, 469
HspAI GCGC 1 cut(s) 272
Kpn2I TCCGGA 1 cut(s) 45
Kzo9I GATC 1 cut(s) 385
LmnI GCTCC 1 cut(s) 11
LweI GCATC 1 cut(s) 253
MaeII ACGT 3 cut(s) 179, 342, 435
MalI GATC 1 cut(s) 387
MboI GATC 1 cut(s) 385
MboII GAAGA 2 cut(s) 112, 541
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 51
MlyI GAGTC 2 cut(s) 427, 518
MmeI TCCRAC 2 cut(s) 300, 456
MnlI CCTC 4 cut(s) 53, 253, 303, 330
MroI TCCGGA 1 cut(s) 45
MseI TTAA 2 cut(s) 299, 571
MslI CAYNNNNRTG 1 cut(s) 63
MspI CCGG 6 cut(s) 46, 99, 130, 245, 413, 424
MspR9I CCNGG 1 cut(s) 246
MvnI CGCG 1 cut(s) 274
NciI CCSGG 1 cut(s) 246
NdeII GATC 1 cut(s) 385
NlaIII CATG 4 cut(s) 310, 331, 403, 469
NspI RCATGY 1 cut(s) 331
PciI ACATGT 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PflFI GACNNNGTC 1 cut(s) 214
PkrI GCNGC 3 cut(s) 268, 271, 445
PleI GAGTC 2 cut(s) 426, 517
PpsI GAGTC 2 cut(s) 426, 517
PscI ACATGT 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 8
PspPI GGNCC 1 cut(s) 322
PsuI RGATCY 1 cut(s) 385
PsyI GACNNNGTC 1 cut(s) 214
RsaI GTAC 3 cut(s) 341, 489, 506
RsaNI GTAC 3 cut(s) 340, 488, 505
RseI CAYNNNNRTG 1 cut(s) 63
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 299, 571
SatI GCNGC 3 cut(s) 267, 270, 444
Sau3AI GATC 1 cut(s) 385
Sau96I GGNCC 1 cut(s) 322
SchI GAGTC 2 cut(s) 427, 518
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 1 cut(s) 253
SinI GGWCC 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 63
Sse9I AATT 1 cut(s) 51
SsiI CCGC 6 cut(s) 29, 127, 171, 266, 269, 443
SspI AATATT 1 cut(s) 236
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 244
TaaI ACNGT 3 cut(s) 36, 78, 163
TaiI ACGT 3 cut(s) 182, 345, 438
TaqI TCGA 2 cut(s) 459, 542
TasI AATT 1 cut(s) 51
TauI GCSGC 3 cut(s) 269, 272, 446
Tru1I TTAA 2 cut(s) 299, 571
Tru9I TTAA 2 cut(s) 299, 571
TspDTI ATGAA 2 cut(s) 211, 416
TspGWI ACGGA 2 cut(s) 73, 505
Tth111I GACNNNGTC 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 322
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.