Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012021

Physical Location & Seq

Genomic Coordinates Forward (+)

60584012 .. 60584961

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAGCAGCTTCACTAACACCACCACCACCCTCCTCCATGCCCGCATTACCAAGCCCCGAAACAGTCGTTGCCGGAACTCGGTAATCCGAGCATTGTTTCCCCGGGAGGAGGATGCGACGAGTCGTAGGAAAGTTGTGACAACATTTTTGGCTACTACACTGGGGATTGGGGTAGCTCAACATGTCATTGCTACTCCACTAGGACTAGCTCAGAATTGGGGGACTCGTTCATTTATAAGGGAACGTTTCTTTGAGCCTGGATTGTCTCCGGAAGATGCGGTGCTTCGGATTAGGCAAACTGCTGAAGGGTTACATAGTATTAGGGACATGTTGGAGGCCATGGCTTGGAGGTACCTCATCTTTTACATTCGCTTAAAGTCGGCTTATCTTTCTCAAGATTTGAAGAATGCAATGACTTTGGTGCCGGAAGGTAACCGAAAAGATTATGCCAAGACGGCCAATGAGTTGGTGGATAACATGGCAGAGTTGGATTATTATATTCGGACGCCAAAGGTGTATGAATCATACCTATTTTACGAGAAGACGTTAAAATCAATAGATGATCTGGTGTTGTTGCTGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009344 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

194

Amino Acids

22.29

Weight (kDa)

9.48

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	3 - 193	1.7e-30	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14150 AT1G14150
fragaria_vesca	FvH4_4g31100
malus_domestica	MD13G1069500.v1.1 MD16G1069900.v1.1
prunus_persica	Prupe.1G277200_v2.0.a1
pyrus_communis	pycom13g06240 pycom16g06090
rosa_chinensis	RchiOBHm_Chr4g0439481
rosa_laevigata	RLG00000006267
rosa_multiflora	Rmu_sc0007276.1_g000007 Rmu_sc0032911.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380390
rosa_rugosa	Rorug04G0318600
rosa_samantha	Rh4AG370100 Rh4BG381900 Rh4CG396500 Rh4DG376600
rosa_wichuraiana	Rw4G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
Acc65I	GGTACC	1 cut(s)	351
AccB1I	GGYRCC	2 cut(s)	351, 421
AccB7I	CCANNNNNTGG	1 cut(s)	345
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	2 cut(s)	43, 278
AclI	AACGTT	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	506
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	79, 109, 345
AflIII	ACRYGT	2 cut(s)	181, 327
AgsI	TTSAA	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	3 cut(s)	9, 176, 209
AluI	AGCT	3 cut(s)	9, 176, 209
Alw26I	GTCTC	1 cut(s)	270
Ama87I	CYCGRG	1 cut(s)	102
Aor13HI	TCCGGA	1 cut(s)	268
AoxI	GGCC	3 cut(s)	336, 456, 579
ApeKI	GCWGC	1 cut(s)	6
ArsI	GACNNNNNNTTYG	2 cut(s)	130, 162
Asp718I	GGTACC	1 cut(s)	351
AsuC2I	CCSGG	2 cut(s)	103, 104
AvaI	CYCGRG	1 cut(s)	102
BanI	GGYRCC	2 cut(s)	351, 421
BbsI	GAAGAC	1 cut(s)	548
BbvI	GCAGC	1 cut(s)	18
BceAI	ACGGC	1 cut(s)	471
BciT130I	CCWGG	1 cut(s)	258
BcnI	CCSGG	2 cut(s)	103, 104
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	3 cut(s)	200, 206, 583
BglI	GCCNNNNNGGC	1 cut(s)	455
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme1390I	CCNGG	3 cut(s)	103, 104, 258
BmeT110I	CYCGRG	1 cut(s)	102
BmiI	GGNNCC	2 cut(s)	353, 423
BmrFI	CCNGG	3 cut(s)	103, 104, 258
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	2 cut(s)	103, 265
BmuI	ACTGGG	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	378
BpuMI	CCSGG	2 cut(s)	103, 104
BsaHI	GRCGYC	1 cut(s)	506
BsaJI	CCNNGG	3 cut(s)	101, 102, 339
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 109, 345
Bse1I	ACTGG	1 cut(s)	165
Bse3DI	GCAATG	2 cut(s)	186, 417
BseAI	TCCGGA	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	3 cut(s)	101, 102, 339
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	3 cut(s)	79, 109, 345
BseMI	GCAATG	2 cut(s)	186, 417
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	165
BseRI	GAGGAG	2 cut(s)	23, 122
BseXI	GCAGC	1 cut(s)	18
BshFI	GGCC	3 cut(s)	338, 458, 581
BshNI	GGYRCC	2 cut(s)	351, 421
BsiHKCI	CYCGRG	1 cut(s)	102
BsiSI	CCGG	4 cut(s)	73, 103, 269, 425
BslFI	GGGAC	2 cut(s)	235, 338
BslI	CCNNNNNNNGG	3 cut(s)	79, 109, 345
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	2 cut(s)	235, 338
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	3 cut(s)	338, 458, 581
BsoBI	CYCGRG	1 cut(s)	102
Bsp13I	TCCGGA	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	562
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	2 cut(s)	43, 278
BspANI	GGCC	3 cut(s)	338, 458, 581
BspCNI	CTCAG	1 cut(s)	223
BspEI	TCCGGA	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	353, 423
BspT107I	GGYRCC	2 cut(s)	351, 421
BsrDI	GCAATG	2 cut(s)	186, 417
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	3 cut(s)	101, 102, 339
BssMI	GATC	1 cut(s)	562
BssNI	GRCGYC	1 cut(s)	506
BssT1I	CCWWGG	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	506
BstC8I	GCNNGC	2 cut(s)	43, 579
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	339
BstEII	GGTNACC	1 cut(s)	431
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	565
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	1 cut(s)	562
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNI	CCWGG	1 cut(s)	258
BstNSI	RCATGY	2 cut(s)	185, 331
BstPI	GGTNACC	1 cut(s)	431
BstSCI	CCNGG	3 cut(s)	101, 102, 256
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	548
BstXI	CCANNNNNNTGG	1 cut(s)	466
BsuRI	GGCC	3 cut(s)	338, 458, 581
BtgI	CCRYGG	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	158
Cac8I	GCNNGC	2 cut(s)	43, 579
Cfr9I	CCCGGG	1 cut(s)	102
CseI	GACGC	1 cut(s)	514
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	5 cut(s)	38, 182, 328, 340, 478
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	564
DpnII	GATC	1 cut(s)	562
EaeI	YGGCCR	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	102
Eco91I	GGTNACC	1 cut(s)	431
EcoO65I	GGTNACC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	5 cut(s)	41, 185, 331, 343, 481
FaqI	GGGAC	2 cut(s)	235, 338
FatI	CATG	5 cut(s)	37, 181, 327, 339, 477
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	7
FspBI	CTAG	3 cut(s)	200, 206, 583
GluI	GCNGC	1 cut(s)	7
HaeIII	GGCC	3 cut(s)	338, 458, 581
HapII	CCGG	4 cut(s)	73, 103, 269, 425
HgaI	GACGC	1 cut(s)	514
Hin1I	GRCGYC	1 cut(s)	506
Hin1II	CATG	5 cut(s)	41, 185, 331, 343, 481
HinfI	GANTC	3 cut(s)	121, 223, 521
HpaII	CCGG	4 cut(s)	73, 103, 269, 425
Hpy188I	TCNGA	4 cut(s)	89, 213, 288, 504
Hpy188III	TCNNGA	2 cut(s)	269, 395
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	2 cut(s)	299, 422
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	2 cut(s)	244, 545
HpyCH4V	TGCA	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	2 cut(s)	244, 545
Hsp92I	GRCGYC	1 cut(s)	506
Hsp92II	CATG	5 cut(s)	41, 185, 331, 343, 481
Kpn2I	TCCGGA	1 cut(s)	268
KpnI	GGTACC	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	562
LpnPI	CCDG	9 cut(s)	86, 116, 146, 243, 270, 282, 438, 551, 563
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	103, 265
MaeI	CTAG	3 cut(s)	200, 206, 583
MaeII	ACGT	2 cut(s)	244, 545
MaeIII	GTNAC	3 cut(s)	136, 309, 431
MalI	GATC	1 cut(s)	564
MboI	GATC	1 cut(s)	562
MboII	GAAGA	3 cut(s)	284, 415, 553
MluCI	AATT	1 cut(s)	214
MlyI	GAGTC	2 cut(s)	130, 217
MmeI	TCCRAC	2 cut(s)	312, 468
MnlI	CCTC	7 cut(s)	41, 44, 100, 103, 328, 342, 365
MroI	TCCGGA	1 cut(s)	268
MseI	TTAA	2 cut(s)	374, 548
MspI	CCGG	4 cut(s)	73, 103, 269, 425
MspR9I	CCNGG	3 cut(s)	103, 104, 258
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	455
NciI	CCSGG	2 cut(s)	103, 104
NcoI	CCATGG	1 cut(s)	339
NdeII	GATC	1 cut(s)	562
NlaIII	CATG	5 cut(s)	41, 185, 331, 343, 481
NlaIV	GGNNCC	2 cut(s)	353, 423
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	2 cut(s)	185, 331
PciI	ACATGT	2 cut(s)	181, 327
PctI	GAATGC	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	521
PflMI	CCANNNNNTGG	1 cut(s)	345
PkrI	GCNGC	1 cut(s)	8
PleI	GAGTC	2 cut(s)	129, 217
PpsI	GAGTC	2 cut(s)	129, 217
PscI	ACATGT	2 cut(s)	181, 327
PsiI	TTATAA	1 cut(s)	236
Psp1406I	AACGTT	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	256
PspEI	GGTNACC	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	353, 423
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SaqAI	TTAA	2 cut(s)	374, 548
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	1 cut(s)	562
SchI	GAGTC	2 cut(s)	130, 217
ScrFI	CCNGG	3 cut(s)	103, 104, 258
SfaNI	GCATC	2 cut(s)	103, 265
SmaI	CCCGGG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	2 cut(s)	43, 278
SspMI	CTAG	3 cut(s)	200, 206, 583
StyD4I	CCNGG	3 cut(s)	101, 102, 256
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	2 cut(s)	247, 548
TasI	AATT	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	2 cut(s)	374, 548
Tru9I	TTAA	2 cut(s)	374, 548
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	219, 534
TspMI	CCCGGG	1 cut(s)	102
TspRI	CASTG	1 cut(s)	165
Van91I	CCANNNNNTGG	1 cut(s)	345
XceI	RCATGY	2 cut(s)	185, 331
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XmaI	CCCGGG	1 cut(s)	102
XspI	CTAG	3 cut(s)	200, 206, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.