Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0012021

Physical Location & Seq

Genomic Coordinates Forward (+)

58664743 .. 58666147

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G031540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAGCAGCTTCACCACCACCACCACCACCACCCTCCTCCATGCCCGCATTACCAAGCCCCGAAACAGTCGTTGCGCGAACTCGGTAATCCGAGCATCGTTCCCCCGAGAGGAGGATGCGGCGAGTCGTAGGAAAGTCGTGACAACATTTTTGGCTACTACACTGGGGATTGGGGTAGCTCAACATGGCATTGCTACTCCACTCGGACTAGCTCAGAATTGGGGGACTCGTTCATTTATAAGGGAACGTTTCTTTGAGCCTGGATTGTCTCCGGAAGATGCAGTGCTTAGGATTAGGCAAACTGCTGAAGGGCTACATAGTATTAGGGACATGTTGGAGGCCATGGCTTGGAGGTACCTCATCTTTTACATTCGCTTAAAGTCGGCTTATCTTTCTCAAGATTTGAAGAATGCAATGACTTTGGTGCCGGAAGTTAACCGAAAAGATTATGCCAAGACGGCCAATGAGTTGGTGGATAACATGGCAGAGTTGGATTATTATATTCGGACACCAAAGGTGTATGAATCATACCTATTTTACGAGAAGACATTAAAATCAATAGATGAACTCGTGTTGCTGCTGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009344 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

195

Amino Acids

22.25

Weight (kDa)

9.35

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	3 - 193	3e-30	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14150 AT1G14150
fragaria_vesca	FvH4_4g31100
malus_domestica	MD13G1069500.v1.1 MD16G1069900.v1.1
prunus_persica	Prupe.1G277200_v2.0.a1
pyrus_communis	pycom13g06240 pycom16g06090
rosa_chinensis	RchiOBHm_Chr4g0439481
rosa_laevigata	RLG00000006267
rosa_multiflora	Rmu_sc0007276.1_g000007 Rmu_sc0032911.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380390
rosa_rugosa	Rorug04G0318600
rosa_samantha	Rh4AG370100 Rh4BG381900 Rh4CG396500 Rh4DG376600
rosa_wichuraiana	Rw4G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
Acc65I	GGTACC	1 cut(s)	354
AccB1I	GGYRCC	2 cut(s)	354, 424
AccB7I	CCANNNNNTGG	1 cut(s)	348
AccII	CGCG	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	271
AciI	CCGC	2 cut(s)	46, 119
AclI	AACGTT	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	459
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	3 cut(s)	109, 112, 348
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	3 cut(s)	9, 179, 212
AluI	AGCT	3 cut(s)	9, 179, 212
Alw26I	GTCTC	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	105
Aor13HI	TCCGGA	1 cut(s)	271
AoxI	GGCC	3 cut(s)	339, 459, 582
ApeKI	GCWGC	2 cut(s)	6, 577
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
Asp718I	GGTACC	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	4
AvaI	CYCGRG	1 cut(s)	105
BanI	GGYRCC	2 cut(s)	354, 424
BauI	CACGAG	1 cut(s)	569
BbsI	GAAGAC	1 cut(s)	551
BbvI	GCAGC	2 cut(s)	18, 564
BceAI	ACGGC	1 cut(s)	474
BciT130I	CCWGG	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	2 cut(s)	209, 586
BglI	GCCNNNNNGGC	1 cut(s)	458
BisI	GCNGC	3 cut(s)	7, 120, 578
BlsI	GCNGC	3 cut(s)	8, 121, 579
Bme1390I	CCNGG	1 cut(s)	261
BmeT110I	CYCGRG	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	356, 426
BmrFI	CCNGG	1 cut(s)	261
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	3 cut(s)	104, 106, 268
BmuI	ACTGGG	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	551
Bpu10I	CCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 112, 348
Bse1I	ACTGG	1 cut(s)	168
Bse3DI	GCAATG	2 cut(s)	189, 420
BseAI	TCCGGA	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	3 cut(s)	109, 112, 348
BseMI	GCAATG	2 cut(s)	189, 420
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	2 cut(s)	26, 125
BseXI	GCAGC	2 cut(s)	18, 564
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	3 cut(s)	341, 461, 584
BshNI	GGYRCC	2 cut(s)	354, 424
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	272, 428
BslFI	GGGAC	2 cut(s)	238, 341
BslI	CCNNNNNNNGG	3 cut(s)	109, 112, 348
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	2 cut(s)	238, 341
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	3 cut(s)	341, 461, 584
BsoBI	CYCGRG	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	271
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	2 cut(s)	46, 119
BspANI	GGCC	3 cut(s)	341, 461, 584
BspCNI	CTCAG	1 cut(s)	226
BspEI	TCCGGA	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	356, 426
BspT107I	GGYRCC	2 cut(s)	354, 424
BsrDI	GCAATG	2 cut(s)	189, 420
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	342
BssSI	CACGAG	1 cut(s)	569
BssT1I	CCWWGG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	569
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	46, 582
BstDEI	CTNAG	2 cut(s)	213, 287
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	121
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	77
BstMAI	GTCTC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	259
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	18, 564
BstV2I	GAAGAC	1 cut(s)	551
BstXI	CCANNNNNNTGG	1 cut(s)	469
BsuRI	GGCC	3 cut(s)	341, 461, 584
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	161, 288
Cac8I	GCNNGC	2 cut(s)	46, 582
CfoI	GCGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	5 cut(s)	41, 185, 331, 343, 481
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	2 cut(s)	213, 287
EaeI	YGGCCR	1 cut(s)	459
Eco130I	CCWWGG	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	5 cut(s)	44, 188, 334, 346, 484
FaqI	GGGAC	2 cut(s)	238, 341
FatI	CATG	5 cut(s)	40, 184, 330, 342, 480
FauI	CCCGC	1 cut(s)	53
Fnu4HI	GCNGC	3 cut(s)	7, 120, 578
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	3 cut(s)	7, 120, 578
FspBI	CTAG	2 cut(s)	209, 586
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	3 cut(s)	7, 120, 578
HaeIII	GGCC	3 cut(s)	341, 461, 584
HapII	CCGG	2 cut(s)	272, 428
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	5 cut(s)	44, 188, 334, 346, 484
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	3 cut(s)	124, 226, 524
HpaI	GTTAAC	1 cut(s)	436
HpaII	CCGG	2 cut(s)	272, 428
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	4 cut(s)	92, 206, 216, 507
Hpy188III	TCNNGA	3 cut(s)	139, 272, 398
Hpy8I	GTNNAC	1 cut(s)	436
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	2 cut(s)	281, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	2 cut(s)	213, 287
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	5 cut(s)	44, 188, 334, 346, 484
HspAI	GCGC	1 cut(s)	75
Kpn2I	TCCGGA	1 cut(s)	271
KpnI	GGTACC	1 cut(s)	358
KspAI	GTTAAC	1 cut(s)	436
LpnPI	CCDG	6 cut(s)	149, 246, 273, 285, 441, 566
Lsp1109I	GCAGC	2 cut(s)	18, 564
LweI	GCATC	3 cut(s)	104, 106, 268
MaeI	CTAG	2 cut(s)	209, 586
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	139
MboII	GAAGA	3 cut(s)	287, 418, 556
MluCI	AATT	1 cut(s)	217
MlyI	GAGTC	2 cut(s)	133, 220
MmeI	TCCRAC	2 cut(s)	315, 471
MnlI	CCTC	7 cut(s)	44, 47, 103, 106, 331, 345, 368
MroI	TCCGGA	1 cut(s)	271
MseI	TTAA	3 cut(s)	377, 435, 551
MspI	CCGG	2 cut(s)	272, 428
MspR9I	CCNGG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	261
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	458
NcoI	CCATGG	1 cut(s)	342
NlaIII	CATG	5 cut(s)	44, 188, 334, 346, 484
NlaIV	GGNNCC	2 cut(s)	356, 426
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	334
PciI	ACATGT	1 cut(s)	330
PctI	GAATGC	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	524
PflMI	CCANNNNNTGG	1 cut(s)	348
PkrI	GCNGC	3 cut(s)	8, 121, 579
PleI	GAGTC	2 cut(s)	132, 220
PpsI	GAGTC	2 cut(s)	132, 220
PscI	ACATGT	1 cut(s)	330
PsiI	TTATAA	1 cut(s)	239
Psp1406I	AACGTT	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	2 cut(s)	356, 426
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SaqAI	TTAA	3 cut(s)	377, 435, 551
SatI	GCNGC	3 cut(s)	7, 120, 578
SchI	GAGTC	2 cut(s)	133, 220
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	8 cut(s)	11, 181, 214, 250, 356, 360, 519, 534
SfaNI	GCATC	3 cut(s)	104, 106, 268
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	2 cut(s)	46, 119
SspMI	CTAG	2 cut(s)	209, 586
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	68
TaiI	ACGT	1 cut(s)	250
TasI	AATT	1 cut(s)	217
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	3 cut(s)	377, 435, 551
Tru9I	TTAA	3 cut(s)	377, 435, 551
TscAI	CASTG	2 cut(s)	168, 288
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	2 cut(s)	6, 577
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	3 cut(s)	222, 537, 579
TspRI	CASTG	2 cut(s)	168, 288
Van91I	CCANNNNNTGG	1 cut(s)	348
XceI	RCATGY	1 cut(s)	334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XspI	CTAG	2 cut(s)	209, 586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.