Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007276.1

Orthogroup ID

OG0012021

Physical Location & Seq

Genomic Coordinates Forward (+)

27228 .. 27988

Gene Structure 761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007276.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgagcagcttcactaacaccaccaccaccaccaccaccctcctccatgcccgcattaccaagccccgaaacagtcgttgccggaactcggtaatccgagcatcgttcccccgagaggaggatgcggcgagtcgtaggaaagtcgtgacaacatttttggctactacactggggattggggtagctcaacatggcattgctactccactaggactagctcagaattgggggactcgttcatttataagggaacgtttctttgagcctggattgtctccggaagatgcggtgcttaggattaggcaaaccgctgaagggctacatagtattagggacatgttggaggccatggcttggaggtacctcatcttttacattcgcttaaagtcggcttatctttctcaagatttgaagaatgcaatgactttggtgccggaagttaaccgaaaagattatgccaagacggccaatgagttggtggataacatggcagagttggattattatattcggacgccaaaggtgtatgaatcatacctattttacgagaagacattaaaatcaatagatgatctggtgttgttgctggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009344 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

197

Amino Acids

22.53

Weight (kDa)

9.48

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14150 AT1G14150
fragaria_vesca	FvH4_4g31100
malus_domestica	MD13G1069500.v1.1 MD16G1069900.v1.1
prunus_persica	Prupe.1G277200_v2.0.a1
pyrus_communis	pycom13g06240 pycom16g06090
rosa_chinensis	RchiOBHm_Chr4g0439481
rosa_laevigata	RLG00000006267
rosa_multiflora	Rmu_sc0007276.1_g000007 Rmu_sc0032911.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380390
rosa_rugosa	Rorug04G0318600
rosa_samantha	Rh4AG370100 Rh4BG381900 Rh4CG396500 Rh4DG376600
rosa_wichuraiana	Rw4G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
Acc65I	GGTACC	1 cut(s)	360
AccB1I	GGYRCC	2 cut(s)	360, 430
AccB7I	CCANNNNNTGG	1 cut(s)	354
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	4 cut(s)	52, 125, 287, 309
AclI	AACGTT	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	465
AcuI	CTGAAG	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	515
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	5 cut(s)	88, 115, 118, 315, 354
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	412
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	3 cut(s)	9, 185, 218
AluI	AGCT	3 cut(s)	9, 185, 218
Alw26I	GTCTC	1 cut(s)	279
Ama87I	CYCGRG	1 cut(s)	111
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	3 cut(s)	345, 465, 588
ApeKI	GCWGC	1 cut(s)	6
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
Asp718I	GGTACC	1 cut(s)	360
AvaI	CYCGRG	1 cut(s)	111
BanI	GGYRCC	2 cut(s)	360, 430
BbsI	GAAGAC	1 cut(s)	557
BbvI	GCAGC	1 cut(s)	18
BceAI	ACGGC	1 cut(s)	480
BciT130I	CCWGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	3 cut(s)	209, 215, 592
BglI	GCCNNNNNGGC	1 cut(s)	464
BisI	GCNGC	2 cut(s)	7, 126
BlsI	GCNGC	2 cut(s)	8, 127
Bme1390I	CCNGG	1 cut(s)	267
BmeT110I	CYCGRG	1 cut(s)	111
BmiI	GGNNCC	2 cut(s)	362, 432
BmrFI	CCNGG	1 cut(s)	267
BmrI	ACTGGG	1 cut(s)	179
BmsI	GCATC	3 cut(s)	110, 112, 274
BmuI	ACTGGG	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	557
Bpu10I	CCTNAGC	1 cut(s)	293
BpuEI	CTTGAG	1 cut(s)	387
BsaHI	GRCGYC	1 cut(s)	515
BsaJI	CCNNGG	1 cut(s)	348
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 115, 118, 315, 354
Bse1I	ACTGG	1 cut(s)	174
Bse3DI	GCAATG	2 cut(s)	195, 426
BseAI	TCCGGA	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	5 cut(s)	88, 115, 118, 315, 354
BseMI	GCAATG	2 cut(s)	195, 426
BseMII	CTCAG	1 cut(s)	233
BseNI	ACTGG	1 cut(s)	174
BseRI	GAGGAG	2 cut(s)	32, 131
BseXI	GCAGC	1 cut(s)	18
BshFI	GGCC	3 cut(s)	347, 467, 590
BshNI	GGYRCC	2 cut(s)	360, 430
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	3 cut(s)	82, 278, 434
BslFI	GGGAC	2 cut(s)	244, 347
BslI	CCNNNNNNNGG	5 cut(s)	88, 115, 118, 315, 354
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	2 cut(s)	244, 347
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	3 cut(s)	347, 467, 590
BsoBI	CYCGRG	1 cut(s)	111
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	571
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	4 cut(s)	52, 125, 287, 309
BspANI	GGCC	3 cut(s)	347, 467, 590
BspCNI	CTCAG	1 cut(s)	232
BspEI	TCCGGA	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	362, 432
BspT107I	GGYRCC	2 cut(s)	360, 430
BsrDI	GCAATG	2 cut(s)	195, 426
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	1 cut(s)	571
BssNI	GRCGYC	1 cut(s)	515
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	74
BstACI	GRCGYC	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	52, 588
BstDEI	CTNAG	2 cut(s)	219, 293
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	1 cut(s)	574
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	571
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	557
BstXI	CCANNNNNNTGG	1 cut(s)	475
BsuRI	GGCC	3 cut(s)	347, 467, 590
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	2 cut(s)	52, 588
CseI	GACGC	1 cut(s)	523
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	5 cut(s)	47, 191, 337, 349, 487
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	2 cut(s)	219, 293
DpnI	GATC	1 cut(s)	573
DpnII	GATC	1 cut(s)	571
EaeI	YGGCCR	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	348
Eco57I	CTGAAG	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	5 cut(s)	50, 194, 340, 352, 490
FaqI	GGGAC	2 cut(s)	244, 347
FatI	CATG	5 cut(s)	46, 190, 336, 348, 486
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	2 cut(s)	7, 126
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	2 cut(s)	7, 126
FspBI	CTAG	3 cut(s)	209, 215, 592
GluI	GCNGC	2 cut(s)	7, 126
HaeIII	GGCC	3 cut(s)	347, 467, 590
HapII	CCGG	3 cut(s)	82, 278, 434
HgaI	GACGC	1 cut(s)	523
Hin1I	GRCGYC	1 cut(s)	515
Hin1II	CATG	5 cut(s)	50, 194, 340, 352, 490
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	3 cut(s)	130, 232, 530
HpaI	GTTAAC	1 cut(s)	442
HpaII	CCGG	3 cut(s)	82, 278, 434
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	3 cut(s)	98, 222, 513
Hpy188III	TCNNGA	3 cut(s)	145, 278, 404
Hpy8I	GTNNAC	1 cut(s)	442
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	2 cut(s)	219, 293
HpySE526I	ACGT	1 cut(s)	253
Hsp92I	GRCGYC	1 cut(s)	515
Hsp92II	CATG	5 cut(s)	50, 194, 340, 352, 490
Kpn2I	TCCGGA	1 cut(s)	277
KpnI	GGTACC	1 cut(s)	364
KspAI	GTTAAC	1 cut(s)	442
Kzo9I	GATC	1 cut(s)	571
LpnPI	CCDG	8 cut(s)	95, 155, 252, 279, 291, 447, 560, 572
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	3 cut(s)	110, 112, 274
MaeI	CTAG	3 cut(s)	209, 215, 592
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	1 cut(s)	573
MboI	GATC	1 cut(s)	571
MboII	GAAGA	3 cut(s)	293, 424, 562
MluCI	AATT	1 cut(s)	223
MlyI	GAGTC	2 cut(s)	139, 226
MmeI	TCCRAC	2 cut(s)	321, 477
MnlI	CCTC	7 cut(s)	50, 53, 109, 112, 337, 351, 374
MroI	TCCGGA	1 cut(s)	277
MseI	TTAA	3 cut(s)	383, 441, 557
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	3 cut(s)	82, 278, 434
MspR9I	CCNGG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	464
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	1 cut(s)	571
NlaIII	CATG	5 cut(s)	50, 194, 340, 352, 490
NlaIV	GGNNCC	2 cut(s)	362, 432
NmuCI	GTSAC	1 cut(s)	145
NspI	RCATGY	1 cut(s)	340
PciI	ACATGT	1 cut(s)	336
PctI	GAATGC	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	530
PflMI	CCANNNNNTGG	1 cut(s)	354
PkrI	GCNGC	2 cut(s)	8, 127
PleI	GAGTC	2 cut(s)	138, 226
PpsI	GAGTC	2 cut(s)	138, 226
PscI	ACATGT	1 cut(s)	336
PsiI	TTATAA	1 cut(s)	245
Psp1406I	AACGTT	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	362, 432
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SaqAI	TTAA	3 cut(s)	383, 441, 557
SatI	GCNGC	2 cut(s)	7, 126
Sau3AI	GATC	1 cut(s)	571
SchI	GAGTC	2 cut(s)	139, 226
ScrFI	CCNGG	1 cut(s)	267
SetI	ASST	8 cut(s)	11, 187, 220, 256, 362, 366, 525, 540
SfaNI	GCATC	3 cut(s)	110, 112, 274
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
Sse9I	AATT	1 cut(s)	223
SsiI	CCGC	4 cut(s)	52, 125, 287, 309
SspMI	CTAG	3 cut(s)	209, 215, 592
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	256
TasI	AATT	1 cut(s)	223
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	3 cut(s)	383, 441, 557
Tru9I	TTAA	3 cut(s)	383, 441, 557
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	228, 543
TspRI	CASTG	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	354
XceI	RCATGY	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	475
XspI	CTAG	3 cut(s)	209, 215, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.