Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0012021

Physical Location & Seq

Genomic Coordinates Forward (+)

53706978 .. 53707752

Gene Structure 775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG381900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAGCGGCAGCTTCACCACCACCACCACCACCCTCCTCCATGCCCGCATTACCAAGCCCCGAACCAGTCGTTGCCGGAACTCGGTCATCCGAGCATCGTTTCCCCGAGAGGAGGATGCGGCGAGTCGTAGGAAAGTTGTGACAACATTTTTGGCTACTACACTGGGGATTGGGGTAGCTCAACATGGCATTGCTACTCCGCTAGGACTAGCTCAGAATTGGGGGACTCGTTCATTTATAAGGGAACGTTTCTTTGAGCCTGGATTGTCTCCGGAAGATGCGGTGCTTCGGATTAGGCAAACTGCTGAAGGGTTACATAGTATTAGGGACATGTTGGAGGCCATGGCTTGGAGGTACCTCATCTTTTACATTCGCTTAAAGTCGGCTTATCTTTCTCAAGATTTGAAGAATGCAATGACTTTGGTGCCGGAAGTTAACCGAAAAGATTATGCCAAGACGGCCAATGAGTTGGTGGATAACATGGCAGAGTTGGATTATTATATTCGGACGCCAAAGGTGTATGAATCATACCTATTTTATGAGAAGACGTTAAAATCAATAGATGATCTGGTGTTGTTGCTGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009344 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

195

Amino Acids

22.26

Weight (kDa)

9.48

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	10 - 194	2.4e-30	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14150 AT1G14150
fragaria_vesca	FvH4_4g31100
malus_domestica	MD13G1069500.v1.1 MD16G1069900.v1.1
prunus_persica	Prupe.1G277200_v2.0.a1
pyrus_communis	pycom13g06240 pycom16g06090
rosa_chinensis	RchiOBHm_Chr4g0439481
rosa_laevigata	RLG00000006267
rosa_multiflora	Rmu_sc0007276.1_g000007 Rmu_sc0032911.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380390
rosa_rugosa	Rorug04G0318600
rosa_samantha	Rh4AG370100 Rh4BG381900 Rh4CG396500 Rh4DG376600
rosa_wichuraiana	Rw4G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
Acc65I	GGTACC	1 cut(s)	354
AccB1I	GGYRCC	2 cut(s)	354, 424
AccB7I	CCANNNNNTGG	1 cut(s)	348
AccBSI	CCGCTC	1 cut(s)	6
AccIII	TCCGGA	1 cut(s)	271
AciI	CCGC	5 cut(s)	6, 46, 119, 200, 281
AclI	AACGTT	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	459
AcuI	CTGAAG	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	509
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	3 cut(s)	82, 112, 348
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	3 cut(s)	12, 179, 212
AluI	AGCT	3 cut(s)	12, 179, 212
Alw26I	GTCTC	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	105
Aor13HI	TCCGGA	1 cut(s)	271
AoxI	GGCC	3 cut(s)	339, 459, 582
ApeKI	GCWGC	1 cut(s)	9
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
Asp718I	GGTACC	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	7
AvaI	CYCGRG	1 cut(s)	105
BanI	GGYRCC	2 cut(s)	354, 424
BbsI	GAAGAC	1 cut(s)	551
BbvI	GCAGC	1 cut(s)	21
BceAI	ACGGC	1 cut(s)	474
BciT130I	CCWGG	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	3 cut(s)	203, 209, 586
BglI	GCCNNNNNGGC	1 cut(s)	458
BisI	GCNGC	3 cut(s)	7, 10, 120
BlsI	GCNGC	3 cut(s)	8, 11, 121
Bme1390I	CCNGG	1 cut(s)	261
BmeT110I	CYCGRG	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	356, 426
BmrFI	CCNGG	1 cut(s)	261
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	3 cut(s)	104, 106, 268
BmuI	ACTGGG	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	551
BpuEI	CTTGAG	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 112, 348
Bse1I	ACTGG	2 cut(s)	66, 168
Bse3DI	GCAATG	2 cut(s)	189, 420
BseAI	TCCGGA	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	2 cut(s)	87, 121
BseLI	CCNNNNNNNGG	3 cut(s)	82, 112, 348
BseMI	GCAATG	2 cut(s)	189, 420
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	2 cut(s)	66, 168
BseRI	GAGGAG	2 cut(s)	26, 125
BseXI	GCAGC	1 cut(s)	21
BshFI	GGCC	3 cut(s)	341, 461, 584
BshNI	GGYRCC	2 cut(s)	354, 424
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	3 cut(s)	76, 272, 428
BslFI	GGGAC	2 cut(s)	238, 341
BslI	CCNNNNNNNGG	3 cut(s)	82, 112, 348
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	2 cut(s)	238, 341
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	3 cut(s)	341, 461, 584
BsoBI	CYCGRG	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	565
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	5 cut(s)	6, 46, 119, 200, 281
BspANI	GGCC	3 cut(s)	341, 461, 584
BspCNI	CTCAG	1 cut(s)	226
BspEI	TCCGGA	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	356, 426
BspT107I	GGYRCC	2 cut(s)	354, 424
BsrBI	CCGCTC	1 cut(s)	6
BsrDI	GCAATG	2 cut(s)	189, 420
BsrI	ACTGG	2 cut(s)	66, 168
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	565
BssNI	GRCGYC	1 cut(s)	509
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	46, 582
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	87, 121
BstKTI	GATC	1 cut(s)	568
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	565
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	551
BstXI	CCANNNNNNTGG	1 cut(s)	469
BsuRI	GGCC	3 cut(s)	341, 461, 584
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	87, 121
BtsIMutI	CAGTG	1 cut(s)	161
Cac8I	GCNNGC	2 cut(s)	46, 582
CseI	GACGC	1 cut(s)	517
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	5 cut(s)	41, 185, 331, 343, 481
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	1 cut(s)	567
DpnII	GATC	1 cut(s)	565
EaeI	YGGCCR	1 cut(s)	459
Eco130I	CCWWGG	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	5 cut(s)	44, 188, 334, 346, 484
FaqI	GGGAC	2 cut(s)	238, 341
FatI	CATG	5 cut(s)	40, 184, 330, 342, 480
FauI	CCCGC	1 cut(s)	53
Fnu4HI	GCNGC	3 cut(s)	7, 10, 120
FokI	GGATG	2 cut(s)	74, 128
Fsp4HI	GCNGC	3 cut(s)	7, 10, 120
FspBI	CTAG	3 cut(s)	203, 209, 586
GluI	GCNGC	3 cut(s)	7, 10, 120
HaeIII	GGCC	3 cut(s)	341, 461, 584
HapII	CCGG	3 cut(s)	76, 272, 428
HgaI	GACGC	1 cut(s)	517
Hin1I	GRCGYC	1 cut(s)	509
Hin1II	CATG	5 cut(s)	44, 188, 334, 346, 484
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	3 cut(s)	124, 226, 524
HpaI	GTTAAC	1 cut(s)	436
HpaII	CCGG	3 cut(s)	76, 272, 428
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	4 cut(s)	92, 216, 291, 507
Hpy188III	TCNNGA	2 cut(s)	272, 398
Hpy8I	GTNNAC	1 cut(s)	436
HpyAV	CCTTC	1 cut(s)	302
HpyCH4IV	ACGT	2 cut(s)	247, 548
HpyCH4V	TGCA	1 cut(s)	413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	2 cut(s)	247, 548
Hsp92I	GRCGYC	1 cut(s)	509
Hsp92II	CATG	5 cut(s)	44, 188, 334, 346, 484
Kpn2I	TCCGGA	1 cut(s)	271
KpnI	GGTACC	1 cut(s)	358
KspAI	GTTAAC	1 cut(s)	436
Kzo9I	GATC	1 cut(s)	565
LpnPI	CCDG	9 cut(s)	79, 89, 149, 246, 273, 285, 441, 554, 566
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	3 cut(s)	104, 106, 268
MaeI	CTAG	3 cut(s)	203, 209, 586
MaeII	ACGT	2 cut(s)	247, 548
MaeIII	GTNAC	2 cut(s)	139, 312
MalI	GATC	1 cut(s)	567
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	1 cut(s)	565
MboII	GAAGA	3 cut(s)	287, 418, 556
MluCI	AATT	1 cut(s)	217
MlyI	GAGTC	2 cut(s)	133, 220
MmeI	TCCRAC	2 cut(s)	315, 471
MnlI	CCTC	7 cut(s)	44, 47, 103, 106, 331, 345, 368
MroI	TCCGGA	1 cut(s)	271
MseI	TTAA	3 cut(s)	377, 435, 551
MspI	CCGG	3 cut(s)	76, 272, 428
MspR9I	CCNGG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	458
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	1 cut(s)	565
NlaIII	CATG	5 cut(s)	44, 188, 334, 346, 484
NlaIV	GGNNCC	2 cut(s)	356, 426
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	334
PciI	ACATGT	1 cut(s)	330
PctI	GAATGC	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	524
PflMI	CCANNNNNTGG	1 cut(s)	348
PkrI	GCNGC	3 cut(s)	8, 11, 121
PleI	GAGTC	2 cut(s)	132, 220
PpsI	GAGTC	2 cut(s)	132, 220
PscI	ACATGT	1 cut(s)	330
PsiI	TTATAA	1 cut(s)	239
Psp1406I	AACGTT	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	2 cut(s)	356, 426
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SaqAI	TTAA	3 cut(s)	377, 435, 551
SatI	GCNGC	3 cut(s)	7, 10, 120
Sau3AI	GATC	1 cut(s)	565
SchI	GAGTC	2 cut(s)	133, 220
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	9 cut(s)	14, 181, 214, 250, 356, 360, 519, 534, 551
SfaNI	GCATC	3 cut(s)	104, 106, 268
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	5 cut(s)	6, 46, 119, 200, 281
SspMI	CTAG	3 cut(s)	203, 209, 586
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	342
TaiI	ACGT	2 cut(s)	250, 551
TaqII	GACCGA	1 cut(s)	73
TasI	AATT	1 cut(s)	217
TauI	GCSGC	2 cut(s)	9, 122
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	3 cut(s)	377, 435, 551
Tru9I	TTAA	3 cut(s)	377, 435, 551
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	9
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	222, 537
TspRI	CASTG	1 cut(s)	168
Van91I	CCANNNNNTGG	1 cut(s)	348
XceI	RCATGY	1 cut(s)	334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XspI	CTAG	3 cut(s)	203, 209, 586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.