Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0012021

Physical Location & Seq

Genomic Coordinates Forward (+)

59431986 .. 59433446

Gene Structure 1461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG376600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAGCAGCTTCACTAACACCACCACCACCACCAACCTCCTCCATGCCCGCATTACCACGCCCCGAAACAGTCGTTGCCGGAACTCGGTAATCCGAGCATCGTTCCCCCGAGAGGAGGATGCGGCGAGTCGTAGGAAAGTCGTGACAACATTTTTGGCTACTACACTGGGGATTGGGGTAGCTCAACATGGCATTGCTACTCCACTAGGACTAGCTCAGAATTGGGGGACTCGTTCATTTATAAGGGAACGTTTCTTTGAGCCTGGATTGTCTCCGGAAGATGCAGTGCTTAGGATTAGGCAAACTGCTGAAGGGCTACATAGTATTAGGGACATGTTGGAGGCCATGGCTTGGAGGTACCTCATCTTTTACATTCGCTTAAAGTCGGCTTATCTTTCTCAAGATTTGAAGAATGCAATGACTTTGGTGCCGGAAGTTAACCGAAAAGATTATGCCAAGACGGCCAATGAGTTGGTGGATAACATGGCAGAGTTGGATTATTATATTCGGACGCCAAAGGTGTATGAATCATACCTATTTTACGAGAAGACATTAAAATCAATAGATGATCTGGTGTTGTTGCTGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009344 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

196

Amino Acids

22.42

Weight (kDa)

9.38

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	7 - 195	2.2e-30	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0012021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14150 AT1G14150
fragaria_vesca	FvH4_4g31100
malus_domestica	MD13G1069500.v1.1 MD16G1069900.v1.1
prunus_persica	Prupe.1G277200_v2.0.a1
pyrus_communis	pycom13g06240 pycom16g06090
rosa_chinensis	RchiOBHm_Chr4g0439481
rosa_laevigata	RLG00000006267
rosa_multiflora	Rmu_sc0007276.1_g000007 Rmu_sc0032911.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380390
rosa_rugosa	Rorug04G0318600
rosa_samantha	Rh4AG370100 Rh4BG381900 Rh4CG396500 Rh4DG376600
rosa_wichuraiana	Rw4G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	242
Acc65I	GGTACC	1 cut(s)	357
AccB1I	GGYRCC	2 cut(s)	357, 427
AccB7I	CCANNNNNTGG	1 cut(s)	351
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	2 cut(s)	49, 122
AclI	AACGTT	1 cut(s)	250
AcoI	YGGCCR	1 cut(s)	462
AcuI	CTGAAG	1 cut(s)	330
AcyI	GRCGYC	1 cut(s)	512
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	4 cut(s)	85, 112, 115, 351
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	409
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	3 cut(s)	9, 182, 215
AluI	AGCT	3 cut(s)	9, 182, 215
Alw26I	GTCTC	1 cut(s)	276
Ama87I	CYCGRG	1 cut(s)	108
Aor13HI	TCCGGA	1 cut(s)	274
AoxI	GGCC	3 cut(s)	342, 462, 585
ApeKI	GCWGC	1 cut(s)	6
ArsI	GACNNNNNNTTYG	2 cut(s)	136, 168
Asp718I	GGTACC	1 cut(s)	357
AvaI	CYCGRG	1 cut(s)	108
BanI	GGYRCC	2 cut(s)	357, 427
BbsI	GAAGAC	1 cut(s)	554
BbvI	GCAGC	1 cut(s)	18
BceAI	ACGGC	1 cut(s)	477
BciT130I	CCWGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	3 cut(s)	206, 212, 589
BglI	GCCNNNNNGGC	1 cut(s)	461
BisI	GCNGC	2 cut(s)	7, 123
BlsI	GCNGC	2 cut(s)	8, 124
Bme1390I	CCNGG	1 cut(s)	264
BmeT110I	CYCGRG	1 cut(s)	108
BmiI	GGNNCC	2 cut(s)	359, 429
BmrFI	CCNGG	1 cut(s)	264
BmrI	ACTGGG	1 cut(s)	176
BmsI	GCATC	3 cut(s)	107, 109, 271
BmuI	ACTGGG	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	554
Bpu10I	CCTNAGC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	512
BsaJI	CCNNGG	1 cut(s)	345
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 112, 115, 351
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	2 cut(s)	192, 423
BseAI	TCCGGA	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	4 cut(s)	85, 112, 115, 351
BseMI	GCAATG	2 cut(s)	192, 423
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	2 cut(s)	29, 128
BseXI	GCAGC	1 cut(s)	18
BshFI	GGCC	3 cut(s)	344, 464, 587
BshNI	GGYRCC	2 cut(s)	357, 427
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	3 cut(s)	79, 275, 431
BslFI	GGGAC	2 cut(s)	241, 344
BslI	CCNNNNNNNGG	4 cut(s)	85, 112, 115, 351
BsmAI	GTCTC	1 cut(s)	276
BsmFI	GGGAC	2 cut(s)	241, 344
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	3 cut(s)	344, 464, 587
BsoBI	CYCGRG	1 cut(s)	108
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	1 cut(s)	568
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	2 cut(s)	49, 122
BspANI	GGCC	3 cut(s)	344, 464, 587
BspCNI	CTCAG	1 cut(s)	229
BspEI	TCCGGA	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	359, 429
BspT107I	GGYRCC	2 cut(s)	357, 427
BsrDI	GCAATG	2 cut(s)	192, 423
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	1 cut(s)	568
BssNI	GRCGYC	1 cut(s)	512
BssT1I	CCWWGG	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	512
BstC8I	GCNNGC	2 cut(s)	49, 585
BstDEI	CTNAG	2 cut(s)	216, 290
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	1 cut(s)	571
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	568
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	554
BstXI	CCANNNNNNTGG	1 cut(s)	472
BsuRI	GGCC	3 cut(s)	344, 464, 587
BtgI	CCRYGG	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	164, 291
Cac8I	GCNNGC	2 cut(s)	49, 585
CseI	GACGC	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	5 cut(s)	44, 188, 334, 346, 484
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	2 cut(s)	216, 290
DpnI	GATC	1 cut(s)	570
DpnII	GATC	1 cut(s)	568
EaeI	YGGCCR	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	5 cut(s)	47, 191, 337, 349, 487
FaqI	GGGAC	2 cut(s)	241, 344
FatI	CATG	5 cut(s)	43, 187, 333, 345, 483
FauI	CCCGC	1 cut(s)	56
Fnu4HI	GCNGC	2 cut(s)	7, 123
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	7, 123
FspBI	CTAG	3 cut(s)	206, 212, 589
GluI	GCNGC	2 cut(s)	7, 123
HaeIII	GGCC	3 cut(s)	344, 464, 587
HapII	CCGG	3 cut(s)	79, 275, 431
HgaI	GACGC	1 cut(s)	520
Hin1I	GRCGYC	1 cut(s)	512
Hin1II	CATG	5 cut(s)	47, 191, 337, 349, 487
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	3 cut(s)	127, 229, 527
HpaI	GTTAAC	1 cut(s)	439
HpaII	CCGG	3 cut(s)	79, 275, 431
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	3 cut(s)	95, 219, 510
Hpy188III	TCNNGA	3 cut(s)	142, 275, 401
Hpy8I	GTNNAC	1 cut(s)	439
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	2 cut(s)	284, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	2 cut(s)	216, 290
HpySE526I	ACGT	1 cut(s)	250
Hsp92I	GRCGYC	1 cut(s)	512
Hsp92II	CATG	5 cut(s)	47, 191, 337, 349, 487
Kpn2I	TCCGGA	1 cut(s)	274
KpnI	GGTACC	1 cut(s)	361
KspAI	GTTAAC	1 cut(s)	439
Kzo9I	GATC	1 cut(s)	568
LpnPI	CCDG	8 cut(s)	92, 152, 249, 276, 288, 444, 557, 569
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	3 cut(s)	107, 109, 271
MaeI	CTAG	3 cut(s)	206, 212, 589
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	1 cut(s)	570
MboI	GATC	1 cut(s)	568
MboII	GAAGA	3 cut(s)	290, 421, 559
MluCI	AATT	1 cut(s)	220
MlyI	GAGTC	2 cut(s)	136, 223
MmeI	TCCRAC	2 cut(s)	318, 474
MnlI	CCTC	7 cut(s)	47, 50, 106, 109, 334, 348, 371
MroI	TCCGGA	1 cut(s)	274
MseI	TTAA	3 cut(s)	380, 438, 554
MspI	CCGG	3 cut(s)	79, 275, 431
MspR9I	CCNGG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	461
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	1 cut(s)	568
NlaIII	CATG	5 cut(s)	47, 191, 337, 349, 487
NlaIV	GGNNCC	2 cut(s)	359, 429
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	337
PciI	ACATGT	1 cut(s)	333
PctI	GAATGC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	527
PflMI	CCANNNNNTGG	1 cut(s)	351
PkrI	GCNGC	2 cut(s)	8, 124
PleI	GAGTC	2 cut(s)	135, 223
PpsI	GAGTC	2 cut(s)	135, 223
PscI	ACATGT	1 cut(s)	333
PsiI	TTATAA	1 cut(s)	242
Psp1406I	AACGTT	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	2 cut(s)	359, 429
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SaqAI	TTAA	3 cut(s)	380, 438, 554
SatI	GCNGC	2 cut(s)	7, 123
Sau3AI	GATC	1 cut(s)	568
SchI	GAGTC	2 cut(s)	136, 223
ScrFI	CCNGG	1 cut(s)	264
SetI	ASST	9 cut(s)	11, 39, 184, 217, 253, 359, 363, 522, 537
SfaNI	GCATC	3 cut(s)	107, 109, 271
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	2 cut(s)	49, 122
SspMI	CTAG	3 cut(s)	206, 212, 589
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	1 cut(s)	253
TasI	AATT	1 cut(s)	220
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	3 cut(s)	380, 438, 554
Tru9I	TTAA	3 cut(s)	380, 438, 554
TscAI	CASTG	2 cut(s)	171, 291
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	225, 540
TspRI	CASTG	2 cut(s)	171, 291
Van91I	CCANNNNNTGG	1 cut(s)	351
XceI	RCATGY	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XspI	CTAG	3 cut(s)	206, 212, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.