MD16G1069900.v1.1

psbQ-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0012021
Physical Location & Seq
Forward (+)
4915748 .. 4916623
876 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1069900.v1.1.491

Sequence Viewer

Length: 606 bp
ATGAGCAGCCTCACTAACACCACCACAACCTTCCTCCAATCCCACATCGTCGCCAAACCCCAAAATTTCCGTCACAAAATCTCACTCCCGGTAATCAGAGCCTCATTTCCAGGAGAAAACGATCAAGAAAATAACGCCGCGAGTCGAAGAAAAATTGTGACAACATTCTTGGCCACTACATTGGCACTTGGGGCGCATCAACACGGGGTTGCCACCCCGCTCGGGCTAGCTGAAAATTGGGGTGTTCGTTCGTTTATAAGGGAACGTTTTTTCGAGCCCGGACTTTCGCCCGAAGATGCCGTTGCTAGGATAAGGCAAACAGCTGAAGGGCTACATAGCATGAGGGACATGTTGGAGGCCATGGCTTGGAGGTACGTCATATTTTACATCCGTCTGAAGTCGGCCTATCTATCCCAAGATTTGAAAAATGCCGTGACCTTGGTGCCAGAAGGTCGCCGGAACGAGTATGCTAAGACGGCCAATGAATTGGTGGATAACATGGCAGAGCTTGACTATTACGTTCGAACGCCAAAAGTGTATGAATCGTACTTATACTACGAGAAGACATTGAAATCGTTGGATGATTTGGTTGCGCTGTTGGCCTAG

Protein Analysis

202

Amino Acids

22.85

Weight (kDa)

8.75

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbQ PF05757 28 - 201 3e-33 Oxygen evolving enhancer protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14150 AT1G14150
fragaria_vesca FvH4_4g31100
malus_domestica MD13G1069500.v1.1 MD16G1069900.v1.1
prunus_persica Prupe.1G277200_v2.0.a1
pyrus_communis pycom13g06240 pycom16g06090
rosa_chinensis RchiOBHm_Chr4g0439481
rosa_laevigata RLG00000006267
rosa_multiflora Rmu_sc0007276.1_g000007 Rmu_sc0032911.1_g000001
rosa_roxburghii Rroxscaffold_5G00380390
rosa_rugosa Rorug04G0318600
rosa_samantha Rh4AG370100 Rh4BG381900 Rh4CG396500 Rh4DG376600
rosa_wichuraiana Rw4G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 442
AccB7I CCANNNNNTGG 1 cut(s) 366
AccBSI CCGCTC 1 cut(s) 220
AccII CGCG 1 cut(s) 140
AciI CCGC 2 cut(s) 138, 218
AclI AACGTT 1 cut(s) 265
AcoI YGGCCR 2 cut(s) 171, 477
AcsI RAATTY 1 cut(s) 64
AcuI CTGAAG 2 cut(s) 345, 416
AfaI GTAC 2 cut(s) 374, 548
AfiI CCNNNNNNNGG 3 cut(s) 222, 306, 366
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 2 cut(s) 424, 571
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 3 cut(s) 230, 323, 508
AluI AGCT 3 cut(s) 230, 323, 508
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 5 cut(s) 171, 357, 402, 477, 600
ApeKI GCWGC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 64
ArsI GACNNNNNNTTYG 2 cut(s) 55, 87
AspLEI GCGC 2 cut(s) 196, 595
AsuC2I CCSGG 2 cut(s) 89, 279
AsuII TTCGAA 1 cut(s) 523
AsuNHI GCTAGC 1 cut(s) 226
AvaI CYCGRG 1 cut(s) 221
BalI TGGCCA 1 cut(s) 173
BanI GGYRCC 1 cut(s) 442
BanII GRGCYC 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 569
BbvI GCAGC 1 cut(s) 18
BceAI ACGGC 3 cut(s) 284, 416, 492
BciT130I CCWGG 1 cut(s) 111
BcnI CCSGG 2 cut(s) 89, 279
BfaI CTAG 3 cut(s) 227, 306, 604
BisI GCNGC 2 cut(s) 7, 138
BlsI GCNGC 2 cut(s) 8, 139
Bme1390I CCNGG 3 cut(s) 89, 111, 279
BmeT110I CYCGRG 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 444
BmrFI CCNGG 3 cut(s) 89, 111, 279
BmsI GCATC 2 cut(s) 205, 286
BmtI GCTAGC 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 569
Bpu14I TTCGAA 1 cut(s) 523
BpuMI CCSGG 2 cut(s) 89, 279
BsaJI CCNNGG 2 cut(s) 360, 438
Bsc4I CCNNNNNNNGG 3 cut(s) 222, 306, 366
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 360, 438
BseGI GGATG 2 cut(s) 387, 586
BseLI CCNNNNNNNGG 3 cut(s) 222, 306, 366
BseXI GCAGC 1 cut(s) 18
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 5 cut(s) 173, 359, 404, 479, 602
BshNI GGYRCC 1 cut(s) 442
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 3 cut(s) 89, 279, 457
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 3 cut(s) 222, 306, 366
BsmFI GGGAC 1 cut(s) 359
BsnI GGCC 5 cut(s) 173, 359, 404, 479, 602
BsoBI CYCGRG 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 523
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 1 cut(s) 121
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 2 cut(s) 138, 218
BspANI GGCC 5 cut(s) 173, 359, 404, 479, 602
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 444
BspOI GCTAGC 1 cut(s) 230
BspT104I TTCGAA 1 cut(s) 523
BspT107I GGYRCC 1 cut(s) 442
BsrBI CCGCTC 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 360, 438
BssMI GATC 1 cut(s) 121
BssT1I CCWWGG 2 cut(s) 360, 438
Bst2UI CCWGG 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 523
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 471
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 2 cut(s) 387, 586
BstFNI CGCG 1 cut(s) 140
BstHHI GCGC 2 cut(s) 196, 595
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 3 cut(s) 191, 476, 599
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 1 cut(s) 352
BstSCI CCNGG 3 cut(s) 87, 109, 277
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 18
BstV2I GAAGAC 1 cut(s) 569
BstXI CCANNNNNNTGG 2 cut(s) 181, 487
BsuRI GGCC 5 cut(s) 173, 359, 404, 479, 602
BtgI CCRYGG 1 cut(s) 360
BtsCI GGATG 2 cut(s) 387, 586
Cac8I GCNNGC 1 cut(s) 228
CfoI GCGC 2 cut(s) 196, 595
Csp6I GTAC 2 cut(s) 373, 547
CviAII CATG 4 cut(s) 340, 349, 361, 499
CviQI GTAC 2 cut(s) 373, 547
DdeI CTNAG 1 cut(s) 471
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
EaeI YGGCCR 2 cut(s) 171, 477
Eco130I CCWWGG 2 cut(s) 360, 438
Eco24I GRGCYC 1 cut(s) 279
Eco57I CTGAAG 2 cut(s) 345, 416
Eco88I CYCGRG 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 360, 438
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 2 cut(s) 360, 438
FaeI CATG 4 cut(s) 343, 352, 364, 502
FaqI GGGAC 1 cut(s) 359
FatI CATG 4 cut(s) 339, 348, 360, 498
FauI CCCGC 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 7, 138
FokI GGATG 2 cut(s) 374, 593
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 2 cut(s) 7, 138
FspBI CTAG 3 cut(s) 227, 306, 604
GlaI GCGC 2 cut(s) 195, 594
GluI GCNGC 2 cut(s) 7, 138
HaeIII GGCC 5 cut(s) 173, 359, 404, 479, 602
HapII CCGG 3 cut(s) 89, 279, 457
HhaI GCGC 2 cut(s) 196, 595
Hin1II CATG 4 cut(s) 343, 352, 364, 502
Hin6I GCGC 2 cut(s) 194, 593
HinP1I GCGC 2 cut(s) 194, 593
HinfI GANTC 2 cut(s) 142, 542
HpaII CCGG 3 cut(s) 89, 279, 457
Hpy188I TCNGA 2 cut(s) 98, 396
Hpy188III TCNNGA 1 cut(s) 125
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 40, 320, 443
HpyCH4IV ACGT 3 cut(s) 265, 375, 519
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 476, 599
HpyF3I CTNAG 1 cut(s) 471
HpySE526I ACGT 3 cut(s) 265, 375, 519
Hsp92II CATG 4 cut(s) 343, 352, 364, 502
HspAI GCGC 2 cut(s) 194, 593
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 6 cut(s) 96, 102, 123, 292, 459, 470
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 2 cut(s) 205, 286
MaeI CTAG 3 cut(s) 227, 306, 604
MaeII ACGT 3 cut(s) 265, 375, 519
MaeIII GTNAC 3 cut(s) 71, 157, 433
MalI GATC 1 cut(s) 123
MbiI CCGCTC 1 cut(s) 220
MboI GATC 1 cut(s) 121
MboII GAAGA 3 cut(s) 159, 305, 574
MhlI GDGCHC 1 cut(s) 279
MlsI TGGCCA 1 cut(s) 173
MluCI AATT 4 cut(s) 64, 153, 235, 485
MluNI TGGCCA 1 cut(s) 173
MlyI GAGTC 1 cut(s) 151
MmeI TCCRAC 2 cut(s) 333, 558
MnlI CCTC 6 cut(s) 20, 44, 112, 336, 349, 363
Mox20I TGGCCA 1 cut(s) 173
MscI TGGCCA 1 cut(s) 173
Msp20I TGGCCA 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 3 cut(s) 89, 279, 457
MspR9I CCNGG 3 cut(s) 89, 111, 279
MvaI CCWGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 3 cut(s) 191, 476, 599
NciI CCSGG 2 cut(s) 89, 279
NcoI CCATGG 1 cut(s) 360
NdeII GATC 1 cut(s) 121
NheI GCTAGC 1 cut(s) 226
NlaIII CATG 4 cut(s) 343, 352, 364, 502
NlaIV GGNNCC 1 cut(s) 444
NmuCI GTSAC 3 cut(s) 71, 157, 433
NspI RCATGY 1 cut(s) 352
NspV TTCGAA 1 cut(s) 523
PciI ACATGT 1 cut(s) 348
PfeI GAWTC 1 cut(s) 542
PflMI CCANNNNNTGG 1 cut(s) 366
PfoI TCCNGGA 1 cut(s) 109
PkrI GCNGC 2 cut(s) 8, 139
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
PscI ACATGT 1 cut(s) 348
PsiI TTATAA 1 cut(s) 257
Psp1406I AACGTT 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 444
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 2 cut(s) 374, 548
RsaNI GTAC 2 cut(s) 373, 547
SatI GCNGC 2 cut(s) 7, 138
Sau3AI GATC 1 cut(s) 121
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 3 cut(s) 89, 111, 279
SduI GDGCHC 1 cut(s) 279
SfaNI GCATC 2 cut(s) 205, 286
SfuI TTCGAA 1 cut(s) 523
Sse9I AATT 4 cut(s) 64, 153, 235, 485
SsiI CCGC 2 cut(s) 138, 218
SspMI CTAG 3 cut(s) 227, 306, 604
StyD4I CCNGG 3 cut(s) 87, 109, 277
StyI CCWWGG 2 cut(s) 360, 438
TaiI ACGT 3 cut(s) 268, 378, 522
TaqI TCGA 3 cut(s) 145, 273, 523
TasI AATT 4 cut(s) 64, 153, 235, 485
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 1 cut(s) 542
TseFI GTSAC 3 cut(s) 71, 157, 433
TseI GCWGC 1 cut(s) 6
Tsp45I GTSAC 3 cut(s) 71, 157, 433
TspDTI ATGAA 2 cut(s) 498, 555
TspGWI ACGGA 2 cut(s) 59, 380
Van91I CCANNNNNTGG 1 cut(s) 366
XapI RAATTY 1 cut(s) 64
XceI RCATGY 1 cut(s) 352
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XspI CTAG 3 cut(s) 227, 306, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.