Rh4CG396500

psbQ-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0012021
Physical Location & Seq
Forward (+)
64608495 .. 64609374
880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG396500.1

Sequence Viewer

Length: 555 bp
ATGAGCGGCAGCTTCACCACCACCACCACCACCCTCCTCCATGCCCGCATTACCAAGCCCCGAACCAGTCGTTGCCGGAACTCGGTCATCCGAGCATCGTTTCCCCGAGAGGAGGATGCGGCGAGTCGTAGGAAAGTTGTGACAACATTTTTGGCTACTACACTGGGGATTGGGGTAGCTCAACATGGCATTGCTACTCCGCTAGGACTAGCTCAGAATTGGGGGACTCGTTCATTTATAAGGGAACGTTTCTTTGAGCCTGGATTGTCTCCGGAAGATGCGGTGCTTCGGATTAGGCAAACTGCTGAAGGGTTACATAGTATTAGGGACATGTTGGAGGCCATGGCTTGGAGGTACCTCATCTTTTACATTCGCTTAAAGTCGGCTTATCTTTCTCAAGATTTGAAGAATGCAATGACTTTGGTGCCGGAAGTTAACCGAAAAGATTATGCCAAGACGGCCAATGAGTTGGTGGATAACATGGCAGAGATGGAACTCTCAGAATTTAGGAGAATTGTCCTAGATTCATTGCAAAAGGAGTCGGTTTTAGTGTAA

Protein Analysis

184

Amino Acids

20.87

Weight (kDa)

9.76

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbQ PF05757 10 - 165 2e-23 Oxygen evolving enhancer protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14150 AT1G14150
fragaria_vesca FvH4_4g31100
malus_domestica MD13G1069500.v1.1 MD16G1069900.v1.1
prunus_persica Prupe.1G277200_v2.0.a1
pyrus_communis pycom13g06240 pycom16g06090
rosa_chinensis RchiOBHm_Chr4g0439481
rosa_laevigata RLG00000006267
rosa_multiflora Rmu_sc0007276.1_g000007 Rmu_sc0032911.1_g000001
rosa_roxburghii Rroxscaffold_5G00380390
rosa_rugosa Rorug04G0318600
rosa_samantha Rh4AG370100 Rh4BG381900 Rh4CG396500 Rh4DG376600
rosa_wichuraiana Rw4G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 239
Acc65I GGTACC 1 cut(s) 354
AccB1I GGYRCC 2 cut(s) 354, 424
AccB7I CCANNNNNTGG 1 cut(s) 348
AccBSI CCGCTC 1 cut(s) 6
AccIII TCCGGA 1 cut(s) 271
AciI CCGC 5 cut(s) 6, 46, 119, 200, 281
AclI AACGTT 1 cut(s) 247
AcoI YGGCCR 1 cut(s) 459
AcsI RAATTY 1 cut(s) 503
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 3 cut(s) 82, 112, 348
AflIII ACRYGT 1 cut(s) 330
AgsI TTSAA 1 cut(s) 406
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 3 cut(s) 12, 179, 212
AluI AGCT 3 cut(s) 12, 179, 212
Alw26I GTCTC 1 cut(s) 273
Ama87I CYCGRG 1 cut(s) 105
Aor13HI TCCGGA 1 cut(s) 271
AoxI GGCC 2 cut(s) 339, 459
ApeKI GCWGC 1 cut(s) 9
ApoI RAATTY 1 cut(s) 503
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
Asp718I GGTACC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 7
AvaI CYCGRG 1 cut(s) 105
BanI GGYRCC 2 cut(s) 354, 424
BbvI GCAGC 1 cut(s) 21
BccI CCATC 1 cut(s) 484
BceAI ACGGC 1 cut(s) 474
BciT130I CCWGG 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 3 cut(s) 203, 209, 521
BglI GCCNNNNNGGC 1 cut(s) 458
BisI GCNGC 3 cut(s) 7, 10, 120
BlsI GCNGC 3 cut(s) 8, 11, 121
Bme1390I CCNGG 1 cut(s) 261
BmeT110I CYCGRG 1 cut(s) 105
BmiI GGNNCC 2 cut(s) 356, 426
BmrFI CCNGG 1 cut(s) 261
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 3 cut(s) 104, 106, 268
BmuI ACTGGG 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 342
BsaWI WCCGGW 1 cut(s) 271
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 112, 348
Bse1I ACTGG 2 cut(s) 66, 168
Bse3DI GCAATG 3 cut(s) 189, 420, 527
BseAI TCCGGA 1 cut(s) 271
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 2 cut(s) 87, 121
BseLI CCNNNNNNNGG 3 cut(s) 82, 112, 348
BseMI GCAATG 3 cut(s) 189, 420, 527
BseMII CTCAG 2 cut(s) 227, 513
BseNI ACTGG 2 cut(s) 66, 168
BseRI GAGGAG 2 cut(s) 26, 125
BseXI GCAGC 1 cut(s) 21
BshFI GGCC 2 cut(s) 341, 461
BshNI GGYRCC 2 cut(s) 354, 424
BsiHKCI CYCGRG 1 cut(s) 105
BsiSI CCGG 3 cut(s) 76, 272, 428
BslFI GGGAC 2 cut(s) 238, 341
BslI CCNNNNNNNGG 3 cut(s) 82, 112, 348
BsmAI GTCTC 1 cut(s) 273
BsmFI GGGAC 2 cut(s) 238, 341
BsmI GAATGC 1 cut(s) 415
BsnI GGCC 2 cut(s) 341, 461
BsoBI CYCGRG 1 cut(s) 105
Bsp13I TCCGGA 1 cut(s) 271
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 5 cut(s) 6, 46, 119, 200, 281
BspANI GGCC 2 cut(s) 341, 461
BspCNI CTCAG 2 cut(s) 226, 512
BspEI TCCGGA 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 356, 426
BspT107I GGYRCC 2 cut(s) 354, 424
BsrBI CCGCTC 1 cut(s) 6
BsrDI GCAATG 3 cut(s) 189, 420, 527
BsrI ACTGG 2 cut(s) 66, 168
BssECI CCNNGG 1 cut(s) 342
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 213, 499
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 2 cut(s) 87, 121
BstMAI GTCTC 1 cut(s) 273
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 21
BstXI CCANNNNNNTGG 1 cut(s) 469
BsuRI GGCC 2 cut(s) 341, 461
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 2 cut(s) 87, 121
BtsIMutI CAGTG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 355
CviAII CATG 5 cut(s) 41, 185, 331, 343, 481
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 2 cut(s) 213, 499
EaeI YGGCCR 1 cut(s) 459
Eco130I CCWWGG 1 cut(s) 342
Eco57I CTGAAG 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 5 cut(s) 44, 188, 334, 346, 484
FaiI YATR 8 cut(s) 42, 186, 239, 318, 332, 344, 450, 482
FaqI GGGAC 2 cut(s) 238, 341
FatI CATG 5 cut(s) 40, 184, 330, 342, 480
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 3 cut(s) 7, 10, 120
FokI GGATG 2 cut(s) 74, 128
Fsp4HI GCNGC 3 cut(s) 7, 10, 120
FspBI CTAG 3 cut(s) 203, 209, 521
GluI GCNGC 3 cut(s) 7, 10, 120
HaeIII GGCC 2 cut(s) 341, 461
HapII CCGG 3 cut(s) 76, 272, 428
Hin1II CATG 5 cut(s) 44, 188, 334, 346, 484
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 4 cut(s) 124, 226, 524, 539
HpaI GTTAAC 1 cut(s) 436
HpaII CCGG 3 cut(s) 76, 272, 428
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 4 cut(s) 92, 216, 291, 502
Hpy188III TCNNGA 2 cut(s) 272, 398
Hpy8I GTNNAC 1 cut(s) 436
HpyAV CCTTC 1 cut(s) 302
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 2 cut(s) 413, 532
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 2 cut(s) 213, 499
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 5 cut(s) 44, 188, 334, 346, 484
Kpn2I TCCGGA 1 cut(s) 271
KpnI GGTACC 1 cut(s) 358
KspAI GTTAAC 1 cut(s) 436
LpnPI CCDG 7 cut(s) 79, 89, 149, 246, 273, 285, 441
Lsp1109I GCAGC 1 cut(s) 21
LweI GCATC 3 cut(s) 104, 106, 268
MaeI CTAG 3 cut(s) 203, 209, 521
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 2 cut(s) 139, 312
MbiI CCGCTC 1 cut(s) 6
MboII GAAGA 2 cut(s) 287, 418
MluCI AATT 3 cut(s) 217, 503, 513
MlyI GAGTC 3 cut(s) 133, 220, 548
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 7 cut(s) 44, 47, 103, 106, 331, 345, 368
MroI TCCGGA 1 cut(s) 271
MseI TTAA 2 cut(s) 377, 435
MspI CCGG 3 cut(s) 76, 272, 428
MspR9I CCNGG 1 cut(s) 261
Mva1269I GAATGC 1 cut(s) 415
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 458
NcoI CCATGG 1 cut(s) 342
NlaIII CATG 5 cut(s) 44, 188, 334, 346, 484
NlaIV GGNNCC 2 cut(s) 356, 426
NmuCI GTSAC 1 cut(s) 139
NspI RCATGY 1 cut(s) 334
PciI ACATGT 1 cut(s) 330
PctI GAATGC 1 cut(s) 415
PfeI GAWTC 1 cut(s) 524
PflMI CCANNNNNTGG 1 cut(s) 348
PkrI GCNGC 3 cut(s) 8, 11, 121
PleI GAGTC 3 cut(s) 132, 220, 547
PpsI GAGTC 3 cut(s) 132, 220, 547
PscI ACATGT 1 cut(s) 330
PsiI TTATAA 1 cut(s) 239
Psp1406I AACGTT 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 356, 426
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SaqAI TTAA 2 cut(s) 377, 435
SatI GCNGC 3 cut(s) 7, 10, 120
SchI GAGTC 3 cut(s) 133, 220, 548
ScrFI CCNGG 1 cut(s) 261
SetI ASST 6 cut(s) 14, 181, 214, 250, 356, 360
SfaNI GCATC 3 cut(s) 104, 106, 268
SmlI CTYRAG 1 cut(s) 396
SmoI CTYRAG 1 cut(s) 396
Sse9I AATT 3 cut(s) 217, 503, 513
SsiI CCGC 5 cut(s) 6, 46, 119, 200, 281
SspMI CTAG 3 cut(s) 203, 209, 521
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 1 cut(s) 342
TaiI ACGT 1 cut(s) 250
TaqII GACCGA 1 cut(s) 73
TasI AATT 3 cut(s) 217, 503, 513
TauI GCSGC 2 cut(s) 9, 122
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 2 cut(s) 377, 435
Tru9I TTAA 2 cut(s) 377, 435
TscAI CASTG 1 cut(s) 168
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 2 cut(s) 222, 516
TspRI CASTG 1 cut(s) 168
Van91I CCANNNNNTGG 1 cut(s) 348
XapI RAATTY 1 cut(s) 503
XceI RCATGY 1 cut(s) 334
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
XspI CTAG 3 cut(s) 203, 209, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.