MD13G1069500.v1.1

psbQ-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0012021
Physical Location & Seq
Forward (+)
4879093 .. 4880108
1016 bp
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UTR
Exon/CDS
Intron
MD13G1069500.v1.1.491

Sequence Viewer

Length: 609 bp
ATGGGCAGCTTCACTAACACCACCACATCCTTCCTCCAATTCCACATCGTCACCAAACCCCAGAATTTCCGCCACAAAATCTCACTCCCCGTAATCAGAGCATCCCTTCCAGGAGAAGAGCACGACCAAGAAAATAATGCCACGAGTCGAAGAAAAATTGTGACAGCATTTTTGGTCACTACAATGGCGCTTGGGGCACATCAACACGGGGTTGCCACCCCGCTTGGACTAGCCGAAAATTGGGGCGTTCGTTCGTTTATAAGGGAACGTTTTTTCGAGCCTGGACTTTCTCCCGAAGATGCAGTGGCTAGGATTAGGCAGACCGCCGAAGGGCTACATAGCATGAGGGACATGTTGGAGGCCATGGCTTGGAGGTACGTCATATTTTACATTCGTCTAAAGTCGGCCTATCTTTCGCAAGACTTGAAAAATGCTGTGAATTTGGTGCCGGAAGCTCGCCGGAGTGAGTATGCTAAGACGGCCAATGAGTTGGTGGATAACATGGCAGAGCTTGATTATTATGTTCGAACGCCGAAGGTATACGAATCGTACTTGTACTACGAGAAGACATTGAAATCGATCGATGATTTGGTTGCGCTACTGGCATAG

Protein Analysis

203

Amino Acids

23.09

Weight (kDa)

7.95

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbQ PF05757 43 - 202 1.3e-31 Oxygen evolving enhancer protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14150 AT1G14150
fragaria_vesca FvH4_4g31100
malus_domestica MD13G1069500.v1.1 MD16G1069900.v1.1
prunus_persica Prupe.1G277200_v2.0.a1
pyrus_communis pycom13g06240 pycom16g06090
rosa_chinensis RchiOBHm_Chr4g0439481
rosa_laevigata RLG00000006267
rosa_multiflora Rmu_sc0007276.1_g000007 Rmu_sc0032911.1_g000001
rosa_roxburghii Rroxscaffold_5G00380390
rosa_rugosa Rorug04G0318600
rosa_samantha Rh4AG370100 Rh4BG381900 Rh4CG396500 Rh4DG376600
rosa_wichuraiana Rw4G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 445
AccB7I CCANNNNNTGG 1 cut(s) 369
AccI GTMKAC 1 cut(s) 540
AciI CCGC 3 cut(s) 70, 221, 324
AclI AACGTT 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 2 cut(s) 64, 439
AfaI GTAC 3 cut(s) 377, 551, 557
AfiI CCNNNNNNNGG 3 cut(s) 240, 330, 369
AflIII ACRYGT 1 cut(s) 351
AgsI TTSAA 2 cut(s) 427, 574
AjnI CCWGG 2 cut(s) 109, 280
AluBI AGCT 3 cut(s) 9, 455, 511
AluI AGCT 3 cut(s) 9, 455, 511
Alw21I GWGCWC 1 cut(s) 123
AoxI GGCC 3 cut(s) 360, 405, 480
ApeKI GCWGC 1 cut(s) 6
ApoI RAATTY 2 cut(s) 64, 439
ArsI GACNNNNNNTTYG 2 cut(s) 154, 186
AspLEI GCGC 2 cut(s) 190, 598
AsuHPI GGTGA 1 cut(s) 43
AsuII TTCGAA 1 cut(s) 526
BaeGI GKGCMC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 445
BauI CACGAG 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 572
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 18
BceAI ACGGC 1 cut(s) 495
BciT130I CCWGG 2 cut(s) 111, 282
BfaI CTAG 2 cut(s) 230, 309
BfoI RGCGCY 1 cut(s) 191
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
Bme1390I CCNGG 2 cut(s) 111, 282
BmiI GGNNCC 1 cut(s) 447
BmrFI CCNGG 2 cut(s) 111, 282
BmsI GCATC 2 cut(s) 110, 289
BpiI GAAGAC 1 cut(s) 572
Bpu14I TTCGAA 1 cut(s) 526
Bsa29I ATCGAT 2 cut(s) 578, 582
BsaJI CCNNGG 1 cut(s) 363
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 330, 369
Bse1I ACTGG 1 cut(s) 606
BseBI CCWGG 2 cut(s) 111, 282
BseCI ATCGAT 2 cut(s) 578, 582
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 2 cut(s) 26, 101
BseLI CCNNNNNNNGG 3 cut(s) 240, 330, 369
BseNI ACTGG 1 cut(s) 606
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 1 cut(s) 18
Bsh1285I CGRYCG 1 cut(s) 582
BshFI GGCC 3 cut(s) 362, 407, 482
BshNI GGYRCC 1 cut(s) 445
BshVI ATCGAT 2 cut(s) 578, 582
BsiEI CGRYCG 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 2 cut(s) 449, 460
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 3 cut(s) 240, 330, 369
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 3 cut(s) 362, 407, 482
Bsp119I TTCGAA 1 cut(s) 526
Bsp1286I GDGCHC 2 cut(s) 123, 199
Bsp143I GATC 1 cut(s) 579
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 3 cut(s) 70, 221, 324
BspANI GGCC 3 cut(s) 362, 407, 482
BspDI ATCGAT 2 cut(s) 578, 582
BspLI GGNNCC 1 cut(s) 447
BspQI GCTCTTC 1 cut(s) 111
BspT104I TTCGAA 1 cut(s) 526
BspT107I GGYRCC 1 cut(s) 445
BsrI ACTGG 1 cut(s) 606
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 1 cut(s) 579
BssNAI GTATAC 1 cut(s) 541
BssSI CACGAG 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 363
Bst1107I GTATAC 1 cut(s) 541
Bst2BI CACGAG 1 cut(s) 142
Bst2UI CCWGG 2 cut(s) 111, 282
Bst6I CTCTTC 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 526
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 1 cut(s) 474
BstDSI CCRYGG 1 cut(s) 363
BstF5I GGATG 2 cut(s) 26, 101
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 2 cut(s) 190, 598
BstKTI GATC 1 cut(s) 582
BstMBI GATC 1 cut(s) 579
BstMCI CGRYCG 1 cut(s) 582
BstMWI GCNNNNNNNGC 3 cut(s) 194, 479, 602
BstNI CCWGG 2 cut(s) 111, 282
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 2 cut(s) 109, 280
BstSLI GKGCMC 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 18
BstV2I GAAGAC 1 cut(s) 572
BstXI CCANNNNNNTGG 1 cut(s) 490
BstZ17I GTATAC 1 cut(s) 541
Bsu15I ATCGAT 2 cut(s) 578, 582
BsuRI GGCC 3 cut(s) 362, 407, 482
BsuTUI ATCGAT 2 cut(s) 578, 582
BtgI CCRYGG 1 cut(s) 363
BtsCI GGATG 2 cut(s) 26, 101
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 457
CfoI GCGC 2 cut(s) 190, 598
ClaI ATCGAT 2 cut(s) 578, 582
Csp6I GTAC 3 cut(s) 376, 550, 556
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 4 cut(s) 343, 352, 364, 502
CviQI GTAC 3 cut(s) 376, 550, 556
DdeI CTNAG 1 cut(s) 474
DpnI GATC 1 cut(s) 581
DpnII GATC 1 cut(s) 579
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EciI GGCGGA 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 363
EcoRII CCWGG 2 cut(s) 109, 280
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 4 cut(s) 346, 355, 367, 505
FaqI GGGAC 1 cut(s) 362
FatI CATG 4 cut(s) 342, 351, 363, 501
FauI CCCGC 1 cut(s) 228
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 1 cut(s) 7
FokI GGATG 2 cut(s) 13, 88
Fsp4HI GCNGC 1 cut(s) 7
FspBI CTAG 2 cut(s) 230, 309
GlaI GCGC 2 cut(s) 189, 597
GluI GCNGC 1 cut(s) 7
HaeII RGCGCY 1 cut(s) 191
HaeIII GGCC 3 cut(s) 362, 407, 482
HapII CCGG 2 cut(s) 449, 460
HhaI GCGC 2 cut(s) 190, 598
Hin1II CATG 4 cut(s) 346, 355, 367, 505
Hin6I GCGC 2 cut(s) 188, 596
HinP1I GCGC 2 cut(s) 188, 596
HinfI GANTC 2 cut(s) 145, 545
HpaII CCGG 2 cut(s) 449, 460
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 541
Hpy188I TCNGA 1 cut(s) 98
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 541
HpyAV CCTTC 4 cut(s) 40, 116, 323, 529
HpyCH4IV ACGT 2 cut(s) 268, 378
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 479, 602
HpyF3I CTNAG 1 cut(s) 474
HpySE526I ACGT 2 cut(s) 268, 378
Hsp92II CATG 4 cut(s) 346, 355, 367, 505
HspAI GCGC 2 cut(s) 188, 596
Kzo9I GATC 1 cut(s) 579
LguI GCTCTTC 1 cut(s) 111
LpnPI CCDG 8 cut(s) 74, 96, 123, 267, 294, 462, 473, 587
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 2 cut(s) 110, 289
MaeI CTAG 2 cut(s) 230, 309
MaeII ACGT 2 cut(s) 268, 378
MaeIII GTNAC 3 cut(s) 49, 160, 175
MalI GATC 1 cut(s) 581
MboI GATC 1 cut(s) 579
MboII GAAGA 4 cut(s) 128, 162, 308, 577
MhlI GDGCHC 2 cut(s) 123, 199
MluCI AATT 5 cut(s) 38, 64, 156, 238, 439
MlyI GAGTC 1 cut(s) 154
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 4 cut(s) 44, 339, 352, 366
MslI CAYNNNNRTG 1 cut(s) 182
MspI CCGG 2 cut(s) 449, 460
MspR9I CCNGG 2 cut(s) 111, 282
MvaI CCWGG 2 cut(s) 111, 282
MwoI GCNNNNNNNGC 3 cut(s) 194, 479, 602
NcoI CCATGG 1 cut(s) 363
NdeII GATC 1 cut(s) 579
NlaIII CATG 4 cut(s) 346, 355, 367, 505
NlaIV GGNNCC 1 cut(s) 447
NmuCI GTSAC 3 cut(s) 49, 160, 175
NspI RCATGY 1 cut(s) 355
NspV TTCGAA 1 cut(s) 526
PciI ACATGT 1 cut(s) 351
PciSI GCTCTTC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 545
PflMI CCANNNNNTGG 1 cut(s) 369
PfoI TCCNGGA 1 cut(s) 109
PkrI GCNGC 1 cut(s) 8
Ple19I CGATCG 1 cut(s) 582
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
PscI ACATGT 1 cut(s) 351
PsiI TTATAA 1 cut(s) 260
Psp1406I AACGTT 1 cut(s) 268
Psp6I CCWGG 2 cut(s) 109, 280
PspGI CCWGG 2 cut(s) 109, 280
PspN4I GGNNCC 1 cut(s) 447
PvuI CGATCG 1 cut(s) 582
RsaI GTAC 3 cut(s) 377, 551, 557
RsaNI GTAC 3 cut(s) 376, 550, 556
RseI CAYNNNNRTG 1 cut(s) 182
SapI GCTCTTC 1 cut(s) 111
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 1 cut(s) 579
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 2 cut(s) 111, 282
SduI GDGCHC 2 cut(s) 123, 199
SetI ASST 7 cut(s) 11, 271, 377, 381, 457, 513, 540
SfaNI GCATC 2 cut(s) 110, 289
SfuI TTCGAA 1 cut(s) 526
SmiMI CAYNNNNRTG 1 cut(s) 182
Sse9I AATT 5 cut(s) 38, 64, 156, 238, 439
SsiI CCGC 3 cut(s) 70, 221, 324
SspMI CTAG 2 cut(s) 230, 309
StyD4I CCNGG 2 cut(s) 109, 280
StyI CCWWGG 1 cut(s) 363
TaiI ACGT 2 cut(s) 271, 381
TaqI TCGA 5 cut(s) 148, 276, 526, 578, 582
TasI AATT 5 cut(s) 38, 64, 156, 238, 439
TatI WGTACW 1 cut(s) 555
TfiI GAWTC 1 cut(s) 545
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 3 cut(s) 49, 160, 175
TseI GCWGC 1 cut(s) 6
Tsp45I GTSAC 3 cut(s) 49, 160, 175
TspRI CASTG 1 cut(s) 309
Van91I CCANNNNNTGG 1 cut(s) 369
XapI RAATTY 2 cut(s) 64, 439
XceI RCATGY 1 cut(s) 355
XcmI CCANNNNNNNNNTGG 1 cut(s) 490
XmiI GTMKAC 1 cut(s) 540
XspI CTAG 2 cut(s) 230, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.