Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0012021

Physical Location & Seq

Genomic Coordinates Reverse (-)

5738562 .. 5739352

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006267

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAGCAGCTTCACTAACACCACCACCACCACCACCACCACCACCCTCCTCCATGCCCGCATTACCAAGCCCCGAAACAGTCGTTGCCAGAACTCAGTAATCCGAGCATCGTTTCCCAGAGAGGAGGATGCGACGAGTCGTAGGAAAGTTGTGACAACATTTTTGGCTACCACACTGGGGATTGGGGTAGCTCAACATGGCATTGCTACTCCACTAGGACTAGCTCAGAATTGGGGGACTCGTTCATTTATAAGGGAACGTTTCTTTGAGCCTGGATTGTCTCCCGAAGATGCGGTGCTTCGGATTAGGCAAACTGCTGAAGGGTTACATAGTATTAGGGACATGTTGGAGGCCATGGCTTGGAGGTACCTCATCTTTTACATTCGCTTAAAGTCGGCTTATCTTTCTCAAGATTTGAAGAATGCAATGACTTTGGTGCCGGAAGTTAACCGAAAAGATTATGCCAAGACGGCCAATGAGTTGGTGGATAACATGGCAGAGTTGGATTATTATATTCGGACGCCAAAAGTGTATGAATCATACCTATTTTACGAGAAGACGTTAAAATCAATAGATGATCTGGTGTTGTTGCTGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009344 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

200

Amino Acids

22.74

Weight (kDa)

9.35

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	9 - 198	1.1e-30	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14150 AT1G14150
fragaria_vesca	FvH4_4g31100
malus_domestica	MD13G1069500.v1.1 MD16G1069900.v1.1
prunus_persica	Prupe.1G277200_v2.0.a1
pyrus_communis	pycom13g06240 pycom16g06090
rosa_chinensis	RchiOBHm_Chr4g0439481
rosa_laevigata	RLG00000006267
rosa_multiflora	Rmu_sc0007276.1_g000007 Rmu_sc0032911.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380390
rosa_rugosa	Rorug04G0318600
rosa_samantha	Rh4AG370100 Rh4BG381900 Rh4CG396500 Rh4DG376600
rosa_wichuraiana	Rw4G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
Acc65I	GGTACC	1 cut(s)	366
AccB1I	GGYRCC	2 cut(s)	366, 436
AccB7I	CCANNNNNTGG	1 cut(s)	360
AciI	CCGC	2 cut(s)	58, 293
AclI	AACGTT	1 cut(s)	259
AcoI	YGGCCR	1 cut(s)	471
AcuI	CTGAAG	1 cut(s)	339
AcyI	GRCGYC	1 cut(s)	521
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	2 cut(s)	177, 360
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	3 cut(s)	9, 191, 224
AluI	AGCT	3 cut(s)	9, 191, 224
Alw26I	GTCTC	1 cut(s)	285
AoxI	GGCC	3 cut(s)	351, 471, 594
ApeKI	GCWGC	1 cut(s)	6
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
Asp718I	GGTACC	1 cut(s)	366
BanI	GGYRCC	2 cut(s)	366, 436
BbsI	GAAGAC	1 cut(s)	563
BbvI	GCAGC	1 cut(s)	18
BceAI	ACGGC	1 cut(s)	486
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	285
BfaI	CTAG	3 cut(s)	215, 221, 598
BglI	GCCNNNNNGGC	1 cut(s)	470
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	273
BmiI	GGNNCC	2 cut(s)	368, 438
BmrFI	CCNGG	1 cut(s)	273
BmrI	ACTGGG	1 cut(s)	185
BmsI	GCATC	3 cut(s)	116, 118, 280
BmuI	ACTGGG	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	563
BpuEI	CTTGAG	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	521
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 360
Bse1I	ACTGG	1 cut(s)	180
Bse3DI	GCAATG	2 cut(s)	201, 432
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	2 cut(s)	177, 360
BseMI	GCAATG	2 cut(s)	201, 432
BseMII	CTCAG	2 cut(s)	108, 239
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	2 cut(s)	38, 137
BseXI	GCAGC	1 cut(s)	18
BshFI	GGCC	3 cut(s)	353, 473, 596
BshNI	GGYRCC	2 cut(s)	366, 436
BsiSI	CCGG	1 cut(s)	440
BslFI	GGGAC	2 cut(s)	250, 353
BslI	CCNNNNNNNGG	2 cut(s)	177, 360
BsmAI	GTCTC	1 cut(s)	285
BsmFI	GGGAC	2 cut(s)	250, 353
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	3 cut(s)	353, 473, 596
Bsp143I	GATC	1 cut(s)	577
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	2 cut(s)	58, 293
BspANI	GGCC	3 cut(s)	353, 473, 596
BspCNI	CTCAG	2 cut(s)	107, 238
BspLI	GGNNCC	2 cut(s)	368, 438
BspT107I	GGYRCC	2 cut(s)	366, 436
BsrDI	GCAATG	2 cut(s)	201, 432
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	1 cut(s)	577
BssNI	GRCGYC	1 cut(s)	521
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	521
BstC8I	GCNNGC	2 cut(s)	58, 594
BstDEI	CTNAG	2 cut(s)	94, 225
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	1 cut(s)	580
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	577
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	563
BstXI	CCANNNNNNTGG	1 cut(s)	481
BsuRI	GGCC	3 cut(s)	353, 473, 596
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	2 cut(s)	58, 594
CseI	GACGC	1 cut(s)	529
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	5 cut(s)	53, 197, 343, 355, 493
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	2 cut(s)	94, 225
DpnI	GATC	1 cut(s)	579
DpnII	GATC	1 cut(s)	577
EaeI	YGGCCR	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	5 cut(s)	56, 200, 346, 358, 496
FaqI	GGGAC	2 cut(s)	250, 353
FatI	CATG	5 cut(s)	52, 196, 342, 354, 492
FauI	CCCGC	1 cut(s)	65
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	7
FspBI	CTAG	3 cut(s)	215, 221, 598
GluI	GCNGC	1 cut(s)	7
HaeIII	GGCC	3 cut(s)	353, 473, 596
HapII	CCGG	1 cut(s)	440
HgaI	GACGC	1 cut(s)	529
Hin1I	GRCGYC	1 cut(s)	521
Hin1II	CATG	5 cut(s)	56, 200, 346, 358, 496
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	3 cut(s)	136, 238, 536
HpaI	GTTAAC	1 cut(s)	448
HpaII	CCGG	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	4 cut(s)	104, 228, 303, 519
Hpy188III	TCNNGA	2 cut(s)	284, 410
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	2 cut(s)	259, 560
HpyCH4V	TGCA	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpyF3I	CTNAG	2 cut(s)	94, 225
HpySE526I	ACGT	2 cut(s)	259, 560
Hsp92I	GRCGYC	1 cut(s)	521
Hsp92II	CATG	5 cut(s)	56, 200, 346, 358, 496
KpnI	GGTACC	1 cut(s)	370
KspAI	GTTAAC	1 cut(s)	448
Kzo9I	GATC	1 cut(s)	577
LpnPI	CCDG	8 cut(s)	101, 130, 161, 258, 285, 453, 566, 578
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	3 cut(s)	116, 118, 280
MaeI	CTAG	3 cut(s)	215, 221, 598
MaeII	ACGT	2 cut(s)	259, 560
MaeIII	GTNAC	2 cut(s)	151, 324
MalI	GATC	1 cut(s)	579
MboI	GATC	1 cut(s)	577
MboII	GAAGA	3 cut(s)	299, 430, 568
MluCI	AATT	1 cut(s)	229
MlyI	GAGTC	2 cut(s)	145, 232
MmeI	TCCRAC	2 cut(s)	327, 483
MnlI	CCTC	7 cut(s)	56, 59, 115, 118, 343, 357, 380
MseI	TTAA	3 cut(s)	389, 447, 563
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	427
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	470
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	1 cut(s)	577
NlaIII	CATG	5 cut(s)	56, 200, 346, 358, 496
NlaIV	GGNNCC	2 cut(s)	368, 438
NmuCI	GTSAC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	346
PciI	ACATGT	1 cut(s)	342
PctI	GAATGC	1 cut(s)	427
PfeI	GAWTC	1 cut(s)	536
PflMI	CCANNNNNTGG	1 cut(s)	360
PkrI	GCNGC	1 cut(s)	8
PleI	GAGTC	2 cut(s)	144, 232
PpsI	GAGTC	2 cut(s)	144, 232
PscI	ACATGT	1 cut(s)	342
PsiI	TTATAA	1 cut(s)	251
Psp1406I	AACGTT	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	368, 438
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SaqAI	TTAA	3 cut(s)	389, 447, 563
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	1 cut(s)	577
SchI	GAGTC	2 cut(s)	145, 232
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	8 cut(s)	11, 193, 226, 262, 368, 372, 546, 563
SfaNI	GCATC	3 cut(s)	116, 118, 280
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	2 cut(s)	58, 293
SspMI	CTAG	3 cut(s)	215, 221, 598
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	2 cut(s)	262, 563
TasI	AATT	1 cut(s)	229
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	3 cut(s)	389, 447, 563
Tru9I	TTAA	3 cut(s)	389, 447, 563
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	2 cut(s)	234, 549
TspRI	CASTG	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	360
XceI	RCATGY	1 cut(s)	346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XspI	CTAG	3 cut(s)	215, 221, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.