pycom16g06090

psbQ-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012021
Physical Location & Seq
Forward (+)
3891481 .. 3892282
802 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g06090.1

Sequence Viewer

Length: 690 bp
ATGAAGGCCACGTGGCGGCAAGCAGGTAAGGTCCATGTCGGATTGACGGGCAACACGGTCAGCCACAAAAATCTGCCCAAGGAATCCACAATGACAACAATCCTCATCAGCCAGCCCATCACCACCATAGACATTCATGAAAAATTCGAACTTGTTCATATTTTCCCCAAAGCCATGAGCAGCTTCACTAACACCACCACAACCTTCCTCCAATCCCACATCGTCGCCAAACCCCAAAACTTCCGTCACAAAATCTCACTCCCGGTAATCAGAGCCTCATTTCCAGGAGAAGACGATCAAGAAAATAACGCCGCAAGTCGAAGAAAAATCGTGACAACATTCTTGACCACTACATTGGCACTTGGGGCGCATCAACACGGGGTTGCCACCCCGCTCGGGCTAGCTGAAAATTGGGGTGTTCGTTCGTTTATAAGGGAACGTTTTTTCGAGCCCGGACTTTCGCCTGAAGATGCCGTTGCTAGGATAAGGCAAACAGCTGAAGGGCTACATAGCATGAGGGACATGTTGGAGGCCATGGCTTGGAGGTACGTCATATTTTACATCCGTCTGAAGTCAGCCTATCTATCCCAAGATTTGAAAAATGCCGTGACTTTGGTGCCAGAAGGTCGCCGGAACGAGTATGCTAAGACGGCCAATGAATTGGTGGATAACATGGCAGAGCTTGACTAA

Protein Analysis

230

Amino Acids

25.79

Weight (kDa)

9.36

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbQ PF05757 97 - 229 2.1e-23 Oxygen evolving enhancer protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14150 AT1G14150
fragaria_vesca FvH4_4g31100
malus_domestica MD13G1069500.v1.1 MD16G1069900.v1.1
prunus_persica Prupe.1G277200_v2.0.a1
pyrus_communis pycom13g06240 pycom16g06090
rosa_chinensis RchiOBHm_Chr4g0439481
rosa_laevigata RLG00000006267
rosa_multiflora Rmu_sc0007276.1_g000007 Rmu_sc0032911.1_g000001
rosa_roxburghii Rroxscaffold_5G00380390
rosa_rugosa Rorug04G0318600
rosa_samantha Rh4AG370100 Rh4BG381900 Rh4CG396500 Rh4DG376600
rosa_wichuraiana Rw4G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
Acc36I ACCTGC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 616
AccB7I CCANNNNNTGG 1 cut(s) 540
AccBSI CCGCTC 1 cut(s) 394
AciI CCGC 3 cut(s) 16, 312, 392
AclI AACGTT 1 cut(s) 439
AcoI YGGCCR 1 cut(s) 651
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 3 cut(s) 486, 519, 590
AcvI CACGTG 1 cut(s) 12
AfaI GTAC 1 cut(s) 548
AfiI CCNNNNNNNGG 4 cut(s) 15, 396, 480, 540
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 1 cut(s) 598
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 4 cut(s) 183, 404, 497, 682
AluI AGCT 4 cut(s) 183, 404, 497, 682
Ama87I CYCGRG 1 cut(s) 395
AoxI GGCC 3 cut(s) 6, 531, 651
ApeKI GCWGC 1 cut(s) 180
ApoI RAATTY 1 cut(s) 143
ArsI GACNNNNNNTTYG 2 cut(s) 229, 261
Asp700I GAANNNNTTC 1 cut(s) 153
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 31
AsuC2I CCSGG 2 cut(s) 263, 453
AsuHPI GGTGA 1 cut(s) 112
AsuII TTCGAA 1 cut(s) 147
AsuNHI GCTAGC 1 cut(s) 400
AvaI CYCGRG 1 cut(s) 395
AvaII GGWCC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 616
BanII GRGCYC 1 cut(s) 453
BbrPI CACGTG 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 192
BccI CCATC 1 cut(s) 125
BceAI ACGGC 3 cut(s) 458, 590, 666
BciT130I CCWGG 1 cut(s) 285
BcnI CCSGG 2 cut(s) 263, 453
BfaI CTAG 2 cut(s) 401, 480
BfuAI ACCTGC 1 cut(s) 14
BisI GCNGC 3 cut(s) 17, 181, 312
BlsI GCNGC 3 cut(s) 18, 182, 313
Bme1390I CCNGG 3 cut(s) 263, 285, 453
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 618
BmrFI CCNGG 3 cut(s) 263, 285, 453
BmsI GCATC 2 cut(s) 379, 460
BmtI GCTAGC 1 cut(s) 404
BpiI GAAGAC 1 cut(s) 297
Bpu14I TTCGAA 1 cut(s) 147
BpuMI CCSGG 2 cut(s) 263, 453
BsaAI YACGTR 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 78, 534
Bsc4I CCNNNNNNNGG 4 cut(s) 15, 396, 480, 540
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 78, 534
BseGI GGATG 1 cut(s) 561
BseLI CCNNNNNNNGG 4 cut(s) 15, 396, 480, 540
BseXI GCAGC 1 cut(s) 192
BshFI GGCC 3 cut(s) 8, 533, 653
BshNI GGYRCC 1 cut(s) 616
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 3 cut(s) 263, 453, 631
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 4 cut(s) 15, 396, 480, 540
BsmFI GGGAC 1 cut(s) 533
BsnI GGCC 3 cut(s) 8, 533, 653
BsoBI CYCGRG 1 cut(s) 395
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 453
Bsp143I GATC 1 cut(s) 295
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 3 cut(s) 16, 312, 392
BspANI GGCC 3 cut(s) 8, 533, 653
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 618
BspMI ACCTGC 1 cut(s) 14
BspOI GCTAGC 1 cut(s) 404
BspT104I TTCGAA 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 616
BsrBI CCGCTC 1 cut(s) 394
BssECI CCNNGG 2 cut(s) 78, 534
BssMI GATC 1 cut(s) 295
BssT1I CCWWGG 2 cut(s) 78, 534
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 58
BstBAI YACGTR 1 cut(s) 12
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 3 cut(s) 21, 113, 402
BstDEI CTNAG 1 cut(s) 645
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 1 cut(s) 561
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 2 cut(s) 365, 650
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 3 cut(s) 261, 283, 451
BstV1I GCAGC 1 cut(s) 192
BstV2I GAAGAC 1 cut(s) 297
BstXI CCANNNNNNTGG 2 cut(s) 355, 661
BsuRI GGCC 3 cut(s) 8, 533, 653
BtgI CCRYGG 1 cut(s) 534
BtsCI GGATG 1 cut(s) 561
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 3 cut(s) 21, 113, 402
CciI TCATGA 1 cut(s) 136
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 547
CviAII CATG 7 cut(s) 35, 137, 175, 514, 523, 535, 673
CviQI GTAC 1 cut(s) 547
DdeI CTNAG 1 cut(s) 645
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 651
Eco130I CCWWGG 2 cut(s) 78, 534
Eco24I GRGCYC 1 cut(s) 453
Eco47I GGWCC 1 cut(s) 31
Eco57I CTGAAG 3 cut(s) 486, 519, 590
Eco72I CACGTG 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 395
EcoRII CCWGG 1 cut(s) 283
EcoT14I CCWWGG 2 cut(s) 78, 534
EcoT38I GRGCYC 1 cut(s) 453
ErhI CCWWGG 2 cut(s) 78, 534
FaeI CATG 7 cut(s) 38, 140, 178, 517, 526, 538, 676
FaqI GGGAC 1 cut(s) 533
FatI CATG 7 cut(s) 34, 136, 174, 513, 522, 534, 672
FauI CCCGC 1 cut(s) 399
Fnu4HI GCNGC 3 cut(s) 17, 181, 312
FokI GGATG 1 cut(s) 548
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 3 cut(s) 17, 181, 312
FspBI CTAG 2 cut(s) 401, 480
GlaI GCGC 1 cut(s) 369
GluI GCNGC 3 cut(s) 17, 181, 312
HaeIII GGCC 3 cut(s) 8, 533, 653
HapII CCGG 3 cut(s) 263, 453, 631
HhaI GCGC 1 cut(s) 370
Hin1II CATG 7 cut(s) 38, 140, 178, 517, 526, 538, 676
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HinfI GANTC 1 cut(s) 83
HpaII CCGG 3 cut(s) 263, 453, 631
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 3 cut(s) 41, 272, 570
Hpy188III TCNNGA 4 cut(s) 137, 299, 331, 343
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 3 cut(s) 214, 494, 617
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 3 cut(s) 11, 439, 549
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 650
HpyF3I CTNAG 1 cut(s) 645
HpySE526I ACGT 3 cut(s) 11, 439, 549
Hsp92II CATG 7 cut(s) 38, 140, 178, 517, 526, 538, 676
HspAI GCGC 1 cut(s) 368
Kzo9I GATC 1 cut(s) 295
LpnPI CCDG 9 cut(s) 9, 125, 270, 276, 297, 466, 477, 633, 644
Lsp1109I GCAGC 1 cut(s) 192
LweI GCATC 2 cut(s) 379, 460
MaeI CTAG 2 cut(s) 401, 480
MaeII ACGT 3 cut(s) 11, 439, 549
MaeIII GTNAC 3 cut(s) 245, 331, 607
MalI GATC 1 cut(s) 297
MbiI CCGCTC 1 cut(s) 394
MboI GATC 1 cut(s) 295
MboII GAAGA 3 cut(s) 302, 333, 479
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 3 cut(s) 143, 409, 659
MmeI TCCRAC 2 cut(s) 19, 507
MnlI CCTC 6 cut(s) 113, 218, 286, 510, 523, 537
MroXI GAANNNNTTC 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 3 cut(s) 263, 453, 631
MspR9I CCNGG 3 cut(s) 263, 285, 453
MvaI CCWGG 1 cut(s) 285
MwoI GCNNNNNNNGC 2 cut(s) 365, 650
NciI CCSGG 2 cut(s) 263, 453
NcoI CCATGG 1 cut(s) 534
NdeII GATC 1 cut(s) 295
NheI GCTAGC 1 cut(s) 400
NlaIII CATG 7 cut(s) 38, 140, 178, 517, 526, 538, 676
NlaIV GGNNCC 1 cut(s) 618
NmuCI GTSAC 3 cut(s) 245, 331, 607
NspI RCATGY 1 cut(s) 526
NspV TTCGAA 1 cut(s) 147
PagI TCATGA 1 cut(s) 136
PciI ACATGT 1 cut(s) 522
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 83
PflMI CCANNNNNTGG 1 cut(s) 540
PfoI TCCNGGA 1 cut(s) 283
PkrI GCNGC 3 cut(s) 18, 182, 313
PmaCI CACGTG 1 cut(s) 12
PmlI CACGTG 1 cut(s) 12
Ppu21I YACGTR 1 cut(s) 12
PscI ACATGT 1 cut(s) 522
PsiI TTATAA 1 cut(s) 431
Psp1406I AACGTT 1 cut(s) 439
Psp6I CCWGG 1 cut(s) 283
PspCI CACGTG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 618
PspPI GGNCC 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 1 cut(s) 548
RsaNI GTAC 1 cut(s) 547
SatI GCNGC 3 cut(s) 17, 181, 312
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 1 cut(s) 31
ScrFI CCNGG 3 cut(s) 263, 285, 453
SduI GDGCHC 1 cut(s) 453
SfaNI GCATC 2 cut(s) 379, 460
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 1 cut(s) 31
Sse9I AATT 3 cut(s) 143, 409, 659
SsiI CCGC 3 cut(s) 16, 312, 392
SspMI CTAG 2 cut(s) 401, 480
StyD4I CCNGG 3 cut(s) 261, 283, 451
StyI CCWWGG 2 cut(s) 78, 534
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 3 cut(s) 14, 442, 552
TaqI TCGA 3 cut(s) 147, 319, 447
TasI AATT 3 cut(s) 143, 409, 659
TauI GCSGC 2 cut(s) 19, 314
TfiI GAWTC 1 cut(s) 83
TseFI GTSAC 3 cut(s) 245, 331, 607
TseI GCWGC 1 cut(s) 180
Tsp45I GTSAC 3 cut(s) 245, 331, 607
TspDTI ATGAA 5 cut(s) 17, 125, 146, 153, 672
TspGWI ACGGA 2 cut(s) 233, 554
Van91I CCANNNNNTGG 1 cut(s) 540
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 526
XcmI CCANNNNNNNNNTGG 1 cut(s) 661
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 2 cut(s) 401, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.