Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012021

Physical Location & Seq

Genomic Coordinates Forward (+)

30393054 .. 30393973

Gene Structure 920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAGCAGCTTCACTAACGCCACCACCACCGCCGTCCTCCTTCATGCCCGTATTACCAAGCCTCGGAACACTTTCCGGGGCTCTGTAATCCGAGCATCGTTTACGGGGGAGGAAGACGGGACGAGTCGTAGAAAAGTTGTGACAACATTTTTGGCTACAACACTAGGGATGGGGGTGGTTCAGCATGGCATTGCTACTCCGCTTGGACTAGCTCAGAACTGGGGGACTCGTTCATTTATAAGGGAACGTTTCTTTGAGCCTGGATTGTCTCCAGAAGATGCAGTGCTTAGGATTAGGCAAACTGCTGAAGGGTTACATAGTATTAGGGACATGTTGGAGGCCATGGCTTGGAGGTACCTCCTCTTTTACGTTCGCCTGAAGTCGGCATATCTTTCTCAAGATTTGAAGAATGCAATGACTTTGGTGCCGGAAGTTAACCGAAAAGACTATGCCAAGACGGCCAATGAGTTGGTGGATAACATGAAAGAGTTGGATTATTATATCCGGACGCCAAAGGTGTATGAATCGTACCTATATTACGAGAAGACATTGAAATCAATAGATGATCTGGTGTTGTTGCTGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009344 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

196

Amino Acids

22.24

Weight (kDa)

9.39

Isoelectric Point (pI)

29.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	2 - 194	1.1e-30	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14150 AT1G14150
fragaria_vesca	FvH4_4g31100
malus_domestica	MD13G1069500.v1.1 MD16G1069900.v1.1
prunus_persica	Prupe.1G277200_v2.0.a1
pyrus_communis	pycom13g06240 pycom16g06090
rosa_chinensis	RchiOBHm_Chr4g0439481
rosa_laevigata	RLG00000006267
rosa_multiflora	Rmu_sc0007276.1_g000007 Rmu_sc0032911.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380390
rosa_rugosa	Rorug04G0318600
rosa_samantha	Rh4AG370100 Rh4BG381900 Rh4CG396500 Rh4DG376600
rosa_wichuraiana	Rw4G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
Acc65I	GGTACC	1 cut(s)	354
AccB1I	GGYRCC	2 cut(s)	354, 424
AccB7I	CCANNNNNTGG	1 cut(s)	348
AccIII	TCCGGA	1 cut(s)	504
AciI	CCGC	2 cut(s)	30, 200
AclI	AACGTT	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	459
AcuI	CTGAAG	2 cut(s)	327, 398
AcyI	GRCGYC	1 cut(s)	509
AfaI	GTAC	2 cut(s)	356, 530
AfiI	CCNNNNNNNGG	3 cut(s)	63, 348, 382
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	2 cut(s)	406, 553
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	2 cut(s)	9, 212
AluI	AGCT	2 cut(s)	9, 212
Alw26I	GTCTC	1 cut(s)	273
Aor13HI	TCCGGA	1 cut(s)	504
AoxI	GGCC	3 cut(s)	339, 459, 582
ApeKI	GCWGC	1 cut(s)	6
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
Asp700I	GAANNNNTTC	1 cut(s)	71
Asp718I	GGTACC	1 cut(s)	354
AsuC2I	CCSGG	1 cut(s)	77
BanI	GGYRCC	2 cut(s)	354, 424
BanII	GRGCYC	1 cut(s)	83
BbsI	GAAGAC	2 cut(s)	120, 551
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	2 cut(s)	17, 474
BciT130I	CCWGG	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	3 cut(s)	164, 209, 586
BglI	GCCNNNNNGGC	1 cut(s)	458
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme1390I	CCNGG	2 cut(s)	77, 261
BmiI	GGNNCC	2 cut(s)	356, 426
BmrFI	CCNGG	2 cut(s)	77, 261
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	2 cut(s)	104, 268
BmuI	ACTGGG	1 cut(s)	229
BpiI	GAAGAC	2 cut(s)	120, 551
BpmI	CTGGAG	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	509
BsaJI	CCNNGG	3 cut(s)	62, 76, 342
BsaWI	WCCGGW	1 cut(s)	504
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 348, 382
Bse1I	ACTGG	1 cut(s)	224
Bse3DI	GCAATG	2 cut(s)	189, 420
BseAI	TCCGGA	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	3 cut(s)	62, 76, 342
BseGI	GGATG	1 cut(s)	174
BseLI	CCNNNNNNNGG	3 cut(s)	63, 348, 382
BseMI	GCAATG	2 cut(s)	189, 420
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	18
BshFI	GGCC	3 cut(s)	341, 461, 584
BshNI	GGYRCC	2 cut(s)	354, 424
BsiSI	CCGG	3 cut(s)	76, 428, 505
BslFI	GGGAC	3 cut(s)	133, 238, 341
BslI	CCNNNNNNNGG	3 cut(s)	63, 348, 382
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	3 cut(s)	133, 238, 341
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	3 cut(s)	341, 461, 584
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp13I	TCCGGA	1 cut(s)	504
Bsp143I	GATC	1 cut(s)	565
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	2 cut(s)	30, 200
BspANI	GGCC	3 cut(s)	341, 461, 584
BspCNI	CTCAG	1 cut(s)	226
BspEI	TCCGGA	1 cut(s)	504
BspLI	GGNNCC	2 cut(s)	356, 426
BspT107I	GGYRCC	2 cut(s)	354, 424
BsrDI	GCAATG	2 cut(s)	189, 420
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	3 cut(s)	62, 76, 342
BssMI	GATC	1 cut(s)	565
BssNI	GRCGYC	1 cut(s)	509
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	582
BstDEI	CTNAG	2 cut(s)	213, 287
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	174
BstKTI	GATC	1 cut(s)	568
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	565
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	2 cut(s)	75, 259
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	2 cut(s)	120, 551
BstXI	CCANNNNNNTGG	1 cut(s)	469
BsuRI	GGCC	3 cut(s)	341, 461, 584
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	174
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	582
CseI	GACGC	1 cut(s)	517
Csp6I	GTAC	2 cut(s)	355, 529
CviAII	CATG	5 cut(s)	44, 185, 331, 343, 481
CviQI	GTAC	2 cut(s)	355, 529
DdeI	CTNAG	2 cut(s)	213, 287
DpnI	GATC	1 cut(s)	567
DpnII	GATC	1 cut(s)	565
EaeI	YGGCCR	1 cut(s)	459
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	83
Eco57I	CTGAAG	2 cut(s)	327, 398
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	5 cut(s)	47, 188, 334, 346, 484
FaqI	GGGAC	3 cut(s)	133, 238, 341
FatI	CATG	5 cut(s)	43, 184, 330, 342, 480
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	7
FspBI	CTAG	3 cut(s)	164, 209, 586
GluI	GCNGC	1 cut(s)	7
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	341, 461, 584
HapII	CCGG	3 cut(s)	76, 428, 505
HgaI	GACGC	1 cut(s)	517
Hin1I	GRCGYC	1 cut(s)	509
Hin1II	CATG	5 cut(s)	47, 188, 334, 346, 484
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	3 cut(s)	124, 226, 524
HpaI	GTTAAC	1 cut(s)	436
HpaII	CCGG	3 cut(s)	76, 428, 505
Hpy166II	GTNNAC	2 cut(s)	102, 436
Hpy188I	TCNGA	3 cut(s)	66, 92, 216
Hpy188III	TCNNGA	3 cut(s)	272, 398, 505
Hpy8I	GTNNAC	2 cut(s)	102, 436
HpyAV	CCTTC	2 cut(s)	50, 302
HpyCH4IV	ACGT	2 cut(s)	247, 369
HpyCH4V	TGCA	2 cut(s)	281, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	2 cut(s)	213, 287
HpySE526I	ACGT	2 cut(s)	247, 369
Hsp92I	GRCGYC	1 cut(s)	509
Hsp92II	CATG	5 cut(s)	47, 188, 334, 346, 484
Kpn2I	TCCGGA	1 cut(s)	504
KpnI	GGTACC	1 cut(s)	358
KspAI	GTTAAC	1 cut(s)	436
Kzo9I	GATC	1 cut(s)	565
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	104, 268
MaeI	CTAG	3 cut(s)	164, 209, 586
MaeII	ACGT	2 cut(s)	247, 369
MaeIII	GTNAC	2 cut(s)	139, 312
MalI	GATC	1 cut(s)	567
MboI	GATC	1 cut(s)	565
MboII	GAAGA	4 cut(s)	125, 287, 418, 556
MhlI	GDGCHC	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	133, 220
MmeI	TCCRAC	2 cut(s)	315, 471
MnlI	CCTC	7 cut(s)	47, 72, 103, 331, 345, 368, 371
MroI	TCCGGA	1 cut(s)	504
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	1 cut(s)	435
MspI	CCGG	3 cut(s)	76, 428, 505
MspR9I	CCNGG	2 cut(s)	77, 261
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	458
NciI	CCSGG	1 cut(s)	77
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	1 cut(s)	565
NlaIII	CATG	5 cut(s)	47, 188, 334, 346, 484
NlaIV	GGNNCC	2 cut(s)	356, 426
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	334
PciI	ACATGT	1 cut(s)	330
PctI	GAATGC	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	524
PflMI	CCANNNNNTGG	1 cut(s)	348
PkrI	GCNGC	1 cut(s)	8
PleI	GAGTC	2 cut(s)	132, 220
PpsI	GAGTC	2 cut(s)	132, 220
PscI	ACATGT	1 cut(s)	330
PsiI	TTATAA	1 cut(s)	239
Psp1406I	AACGTT	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	2 cut(s)	356, 426
RsaI	GTAC	2 cut(s)	356, 530
RsaNI	GTAC	2 cut(s)	355, 529
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	1 cut(s)	565
SchI	GAGTC	2 cut(s)	133, 220
ScrFI	CCNGG	2 cut(s)	77, 261
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	8 cut(s)	11, 214, 250, 356, 360, 372, 519, 534
SfaNI	GCATC	2 cut(s)	104, 268
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
SsiI	CCGC	2 cut(s)	30, 200
SspMI	CTAG	3 cut(s)	164, 209, 586
StyD4I	CCNGG	2 cut(s)	75, 259
StyI	CCWWGG	1 cut(s)	342
TaiI	ACGT	2 cut(s)	250, 372
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	4 cut(s)	32, 222, 497, 537
TspRI	CASTG	1 cut(s)	288
Van91I	CCANNNNNTGG	1 cut(s)	348
XceI	RCATGY	1 cut(s)	334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	3 cut(s)	164, 209, 586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.