Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032911.1

Orthogroup ID

OG0012021

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 276

Gene Structure 275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032911.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 275 bp

atgagcagcttcactaacaccaccaccaccctcctccatgcccgcattaccaagccccgaaacagtcgttgccggaactcggtaatccgagcatcgttcccccgagaggaggatgcggcgagtcgtagaaaagtcgtgacaacatttttggctactacactggggattggggtagctcaacatggcattgctaccccactaggactagctcagaattgggggactcgttcatttataagggaacgtttctttgagcctggattgtctccggaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009344 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

91

Amino Acids

10.1

Weight (kDa)

11.58

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14150 AT1G14150
fragaria_vesca	FvH4_4g31100
malus_domestica	MD13G1069500.v1.1 MD16G1069900.v1.1
prunus_persica	Prupe.1G277200_v2.0.a1
pyrus_communis	pycom13g06240 pycom16g06090
rosa_chinensis	RchiOBHm_Chr4g0439481
rosa_laevigata	RLG00000006267
rosa_multiflora	Rmu_sc0007276.1_g000007 Rmu_sc0032911.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380390
rosa_rugosa	Rorug04G0318600
rosa_samantha	Rh4AG370100 Rh4BG381900 Rh4CG396500 Rh4DG376600
rosa_wichuraiana	Rw4G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	2 cut(s)	43, 116
AclI	AACGTT	1 cut(s)	244
AfiI	CCNNNNNNNGG	3 cut(s)	79, 106, 109
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	3 cut(s)	9, 176, 209
AluI	AGCT	3 cut(s)	9, 176, 209
Alw26I	GTCTC	1 cut(s)	270
Ama87I	CYCGRG	1 cut(s)	102
Aor13HI	TCCGGA	1 cut(s)	268
ApeKI	GCWGC	1 cut(s)	6
ArsI	GACNNNNNNTTYG	2 cut(s)	130, 162
AvaI	CYCGRG	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	18
BciT130I	CCWGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	2 cut(s)	200, 206
BisI	GCNGC	2 cut(s)	7, 117
BlsI	GCNGC	2 cut(s)	8, 118
Bme1390I	CCNGG	1 cut(s)	258
BmeT110I	CYCGRG	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	258
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	2 cut(s)	101, 103
BmuI	ACTGGG	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 106, 109
Bse1I	ACTGG	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	186
BseAI	TCCGGA	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	3 cut(s)	79, 106, 109
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	165
BseRI	GAGGAG	2 cut(s)	23, 122
BseXI	GCAGC	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	73, 269
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	3 cut(s)	79, 106, 109
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	102
Bsp13I	TCCGGA	1 cut(s)	268
BspACI	CCGC	2 cut(s)	43, 116
BspCNI	CTCAG	1 cut(s)	223
BspEI	TCCGGA	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	270
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	43
CviAII	CATG	2 cut(s)	38, 182
CviJI	RGCY	6 cut(s)	9, 55, 152, 176, 209, 256
CviKI_1	RGCY	6 cut(s)	9, 55, 152, 176, 209, 256
DdeI	CTNAG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	256
FaeI	CATG	2 cut(s)	41, 185
FaiI	YATR	3 cut(s)	39, 183, 236
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	2 cut(s)	37, 181
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	2 cut(s)	7, 117
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	7, 117
FspBI	CTAG	2 cut(s)	200, 206
GluI	GCNGC	2 cut(s)	7, 117
HapII	CCGG	2 cut(s)	73, 269
Hin1II	CATG	2 cut(s)	41, 185
HinfI	GANTC	2 cut(s)	121, 223
HpaII	CCGG	2 cut(s)	73, 269
Hpy188I	TCNGA	2 cut(s)	89, 213
Hpy188III	TCNNGA	2 cut(s)	136, 269
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	244
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	2 cut(s)	41, 185
Kpn2I	TCCGGA	1 cut(s)	268
LpnPI	CCDG	4 cut(s)	86, 146, 243, 270
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	101, 103
MaeI	CTAG	2 cut(s)	200, 206
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	136
MluCI	AATT	1 cut(s)	214
MlyI	GAGTC	2 cut(s)	130, 217
MnlI	CCTC	4 cut(s)	41, 44, 100, 103
MroI	TCCGGA	1 cut(s)	268
MspI	CCGG	2 cut(s)	73, 269
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
NlaIII	CATG	2 cut(s)	41, 185
NmuCI	GTSAC	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	8, 118
PleI	GAGTC	2 cut(s)	129, 217
PpsI	GAGTC	2 cut(s)	129, 217
PsiI	TTATAA	1 cut(s)	236
Psp1406I	AACGTT	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
SatI	GCNGC	2 cut(s)	7, 117
SchI	GAGTC	2 cut(s)	130, 217
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	4 cut(s)	11, 178, 211, 247
SfaNI	GCATC	2 cut(s)	101, 103
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	2 cut(s)	43, 116
SspMI	CTAG	2 cut(s)	200, 206
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	1 cut(s)	247
TasI	AATT	1 cut(s)	214
TauI	GCSGC	1 cut(s)	119
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	165
XspI	CTAG	2 cut(s)	200, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.