Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012021

Physical Location & Seq

Genomic Coordinates Reverse (-)

28208717 .. 28209710

Gene Structure 994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G277200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAGCAGCTTCACCAACACCACCACAACCTTCCTCCATGCCCAAATCACCAAACCCCAAAACTACCTCTGCAAAATCTCACTCCCAGCCATCAAAGCCTCACTTCCAGGAGCAGAAGAAGAAGAGAACAATGCCACAAGTCGAAGAAAAATTGTGACATCATTTTTAGGCACTTCCTTGGCACTTGGGGTGCACCAACATGGCATTGCCACCCCACTTGGACTAGCCGAGAATTGGGGCACTCGTTCGTTTATAAGGGAACGATTTTTTGAGCCTGGATTGTCTCCAGAAGATGCAGTGGCTAGAATTAAGCAAACAGCTGAAGGGCTGCACAGCATTAGGGACATGTTGGAGGCCATGGCTTGGAGGTATGTCATATTTTACATTCGCCTAAAGTCGGCCTATCTTTCTCAGGATCTGAAAAATGCTGCGACTCTGGTGCCGGATGTTCGCCGTCAAGAGTATGTTAAGACGGCCAATGAGTTGGTGAATAACATGACAGAGTTTGATTATTATGTTCGAACGCCGAAGGTGTATGAATCGTATCTATACTACGAGAAGACATTGAAATCAATAGATGATCTGGTGGCGTTGTTGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009344 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

201

Amino Acids

22.71

Weight (kDa)

7.81

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14150 AT1G14150
fragaria_vesca	FvH4_4g31100
malus_domestica	MD13G1069500.v1.1 MD16G1069900.v1.1
prunus_persica	Prupe.1G277200_v2.0.a1
pyrus_communis	pycom13g06240 pycom16g06090
rosa_chinensis	RchiOBHm_Chr4g0439481
rosa_laevigata	RLG00000006267
rosa_multiflora	Rmu_sc0007276.1_g000007 Rmu_sc0032911.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380390
rosa_rugosa	Rorug04G0318600
rosa_samantha	Rh4AG370100 Rh4BG381900 Rh4CG396500 Rh4DG376600
rosa_wichuraiana	Rw4G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	439
AccB7I	CCANNNNNTGG	1 cut(s)	363
AclWI	GGATC	1 cut(s)	423
AcoI	YGGCCR	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	342
AfiI	CCNNNNNNNGG	3 cut(s)	234, 363, 397
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	1 cut(s)	568
AjnI	CCWGG	2 cut(s)	106, 274
AluBI	AGCT	2 cut(s)	9, 320
AluI	AGCT	2 cut(s)	9, 320
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	288
Alw44I	GTGCAC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	423
AlwNI	CAGNNNCTG	1 cut(s)	418
AoxI	GGCC	4 cut(s)	354, 399, 474, 597
ApaLI	GTGCAC	1 cut(s)	191
ApeKI	GCWGC	3 cut(s)	6, 328, 428
AsuHPI	GGTGA	3 cut(s)	4, 40, 499
AsuII	TTCGAA	1 cut(s)	520
BaeGI	GKGCMC	2 cut(s)	195, 242
BanI	GGYRCC	1 cut(s)	439
BbsI	GAAGAC	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	18, 315, 415
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	2 cut(s)	438, 489
BcgI	CGANNNNNNTGC	2 cut(s)	421, 455
BciT130I	CCWGG	2 cut(s)	108, 276
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	3 cut(s)	224, 303, 601
BisI	GCNGC	3 cut(s)	7, 329, 429
BlsI	GCNGC	3 cut(s)	8, 330, 430
Bme1390I	CCNGG	2 cut(s)	108, 276
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	2 cut(s)	108, 276
BmsI	GCATC	1 cut(s)	283
BpiI	GAAGAC	1 cut(s)	566
BpmI	CTGGAG	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	520
BsaJI	CCNNGG	2 cut(s)	177, 357
Bsc4I	CCNNNNNNNGG	3 cut(s)	234, 363, 397
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	2 cut(s)	108, 276
BseDI	CCNNGG	2 cut(s)	177, 357
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	3 cut(s)	234, 363, 397
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	425
BseSI	GKGCMC	2 cut(s)	195, 242
BseXI	GCAGC	3 cut(s)	18, 315, 415
BseYI	CCCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	314
BshFI	GGCC	4 cut(s)	356, 401, 476, 599
BshNI	GGYRCC	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	3 cut(s)	234, 363, 397
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	4 cut(s)	356, 401, 476, 599
Bsp119I	TTCGAA	1 cut(s)	520
Bsp1286I	GDGCHC	2 cut(s)	195, 242
Bsp143I	GATC	2 cut(s)	415, 580
Bsp19I	CCATGG	1 cut(s)	357
BspANI	GGCC	4 cut(s)	356, 401, 476, 599
BspCNI	CTCAG	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	441
BspPI	GGATC	1 cut(s)	423
BspT104I	TTCGAA	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	177, 357
BssMI	GATC	2 cut(s)	415, 580
BssT1I	CCWWGG	2 cut(s)	177, 357
Bst2UI	CCWGG	2 cut(s)	108, 276
Bst6I	CTCTTC	1 cut(s)	117
BstBI	TTCGAA	1 cut(s)	520
BstDEI	CTNAG	1 cut(s)	411
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	451
BstKTI	GATC	2 cut(s)	418, 583
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	2 cut(s)	415, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 596
BstNI	CCWGG	2 cut(s)	108, 276
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	2 cut(s)	106, 274
BstSLI	GKGCMC	2 cut(s)	195, 242
BstV1I	GCAGC	3 cut(s)	18, 315, 415
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	1 cut(s)	415
BstXI	CCANNNNNNTGG	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	4 cut(s)	356, 401, 476, 599
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	451
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	303
CaiI	CAGNNNCTG	1 cut(s)	418
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CviAII	CATG	5 cut(s)	38, 200, 346, 358, 496
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	2 cut(s)	417, 582
DpnII	GATC	2 cut(s)	415, 580
EaeI	YGGCCR	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco130I	CCWWGG	2 cut(s)	177, 357
Eco57I	CTGAAG	1 cut(s)	342
EcoRII	CCWGG	2 cut(s)	106, 274
EcoT14I	CCWWGG	2 cut(s)	177, 357
ErhI	CCWWGG	2 cut(s)	177, 357
FaeI	CATG	5 cut(s)	41, 203, 349, 361, 499
FalI	AAGNNNNNCTT	2 cut(s)	87, 119
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	5 cut(s)	37, 199, 345, 357, 495
Fnu4HI	GCNGC	3 cut(s)	7, 329, 429
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	3 cut(s)	7, 329, 429
FspBI	CTAG	3 cut(s)	224, 303, 601
GluI	GCNGC	3 cut(s)	7, 329, 429
GsaI	CCCAGC	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	4 cut(s)	356, 401, 476, 599
HapII	CCGG	1 cut(s)	443
Hin1II	CATG	5 cut(s)	41, 203, 349, 361, 499
HinfI	GANTC	2 cut(s)	433, 539
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	3 cut(s)	4, 40, 499
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	3 cut(s)	287, 413, 458
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	3 cut(s)	40, 317, 523
HpyCH4V	TGCA	4 cut(s)	72, 193, 296, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 596
HpyF3I	CTNAG	1 cut(s)	411
Hsp92II	CATG	5 cut(s)	41, 203, 349, 361, 499
Kzo9I	GATC	2 cut(s)	415, 580
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	3 cut(s)	18, 315, 415
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	3 cut(s)	224, 303, 601
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	2 cut(s)	417, 582
MboI	GATC	2 cut(s)	415, 580
MboII	GAAGA	6 cut(s)	128, 131, 134, 156, 302, 571
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	2 cut(s)	195, 242
MluCI	AATT	3 cut(s)	150, 232, 306
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	5 cut(s)	44, 77, 109, 346, 360
MseI	TTAA	2 cut(s)	309, 468
MslI	CAYNNNNRTG	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	108, 276
MvaI	CCWGG	2 cut(s)	108, 276
MwoI	GCNNNNNNNGC	2 cut(s)	95, 596
NcoI	CCATGG	1 cut(s)	357
NdeII	GATC	2 cut(s)	415, 580
NlaIII	CATG	5 cut(s)	41, 203, 349, 361, 499
NlaIV	GGNNCC	1 cut(s)	441
NmeAIII	GCCGAG	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	349
NspV	TTCGAA	1 cut(s)	520
PciI	ACATGT	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	539
PflMI	CCANNNNNTGG	1 cut(s)	363
PfoI	TCCNGGA	1 cut(s)	106
PkrI	GCNGC	3 cut(s)	8, 330, 430
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PscI	ACATGT	1 cut(s)	345
PsiI	TTATAA	1 cut(s)	254
Psp6I	CCWGG	2 cut(s)	106, 274
PspFI	CCCAGC	1 cut(s)	85
PspGI	CCWGG	2 cut(s)	106, 274
PspN4I	GGNNCC	1 cut(s)	441
PstNI	CAGNNNCTG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	309, 468
SatI	GCNGC	3 cut(s)	7, 329, 429
Sau3AI	GATC	2 cut(s)	415, 580
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	2 cut(s)	108, 276
SduI	GDGCHC	2 cut(s)	195, 242
SetI	ASST	6 cut(s)	11, 32, 69, 322, 371, 534
SfaNI	GCATC	1 cut(s)	283
SfuI	TTCGAA	1 cut(s)	520
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	3 cut(s)	150, 232, 306
SspMI	CTAG	3 cut(s)	224, 303, 601
StyD4I	CCNGG	2 cut(s)	106, 274
StyI	CCWWGG	2 cut(s)	177, 357
TaqI	TCGA	2 cut(s)	142, 520
TasI	AATT	3 cut(s)	150, 232, 306
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	2 cut(s)	309, 468
Tru9I	TTAA	2 cut(s)	309, 468
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	3 cut(s)	6, 328, 428
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	552
TspRI	CASTG	1 cut(s)	303
Van91I	CCANNNNNTGG	1 cut(s)	363
VneI	GTGCAC	1 cut(s)	191
XceI	RCATGY	1 cut(s)	349
XspI	CTAG	3 cut(s)	224, 303, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.