Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0012021

Physical Location & Seq

Genomic Coordinates Forward (+)

4051107 .. 4051808

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGCAGCTTCACGAACACCACCACATCCTTCCTCCAATTCCACATCGTCACCAAACCCCAAAATTTCCGTCACAAAATCTCACTGCCGGTAATCAGAGCATCCTTTCCAGGAGAAGAACACGAACAAGAAAATAATGCCACGAGTCGAAGAAAAATTGTGACAACATTTTTGGTCGCTACAATGGCACTTGGGGCACATCAACACGGGGTTGCCACACCGCTTGGACTAGCCGAAAATTGGGGCGTTCGTTCGTTTATAAGGGAACGTTTTTTCGAGCCTGGACTTTCTCCCGAAGATGCAGTGGCTAGGATTAGGCAGACTGCCGAAGGGCTACATAGCATGAGGGACATGTTGGAGGCCATGGCTTGGAGGTACGTCATATTTTACATTCGTCTAAAGTCTGCCTATCTTTCGCAAGACTTGAAAAATGCTGTGAATTTGGTGCCGGAAGCTCGCCGGAGTGAGTATGCTAAGACGGCCAATGAATTGGTGGATAACATGGCAGAGCTTGATTATTATGTTCGAACGCCGAAGGTATATGAATCGTACTTGTACTACGAGAAGACATTGAAATCGATCGATGATTTGGTTGCACTACTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009344 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

203

Amino Acids

23.14

Weight (kDa)

7.95

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14150 AT1G14150
fragaria_vesca	FvH4_4g31100
malus_domestica	MD13G1069500.v1.1 MD16G1069900.v1.1
prunus_persica	Prupe.1G277200_v2.0.a1
pyrus_communis	pycom13g06240 pycom16g06090
rosa_chinensis	RchiOBHm_Chr4g0439481
rosa_laevigata	RLG00000006267
rosa_multiflora	Rmu_sc0007276.1_g000007 Rmu_sc0032911.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380390
rosa_rugosa	Rorug04G0318600
rosa_samantha	Rh4AG370100 Rh4BG381900 Rh4CG396500 Rh4DG376600
rosa_wichuraiana	Rw4G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	445
AccB7I	CCANNNNNTGG	1 cut(s)	369
AciI	CCGC	1 cut(s)	221
AclI	AACGTT	1 cut(s)	268
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	2 cut(s)	64, 439
AfaI	GTAC	3 cut(s)	377, 551, 557
AfiI	CCNNNNNNNGG	2 cut(s)	240, 369
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	2 cut(s)	427, 574
AjnI	CCWGG	2 cut(s)	109, 280
AluBI	AGCT	3 cut(s)	9, 455, 511
AluI	AGCT	3 cut(s)	9, 455, 511
AoxI	GGCC	2 cut(s)	360, 480
ApeKI	GCWGC	1 cut(s)	6
ApoI	RAATTY	2 cut(s)	64, 439
ArsI	GACNNNNNNTTYG	4 cut(s)	55, 87, 154, 186
AsuHPI	GGTGA	1 cut(s)	43
AsuII	TTCGAA	1 cut(s)	526
BaeGI	GKGCMC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	445
BauI	CACGAG	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	572
BbvI	GCAGC	1 cut(s)	18
BceAI	ACGGC	1 cut(s)	495
BciT130I	CCWGG	2 cut(s)	111, 282
BfaI	CTAG	2 cut(s)	230, 309
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme1390I	CCNGG	2 cut(s)	111, 282
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	111, 282
BmsI	GCATC	2 cut(s)	110, 289
BpiI	GAAGAC	1 cut(s)	572
Bpu14I	TTCGAA	1 cut(s)	526
Bsa29I	ATCGAT	2 cut(s)	578, 582
BsaJI	CCNNGG	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 369
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	606
BseBI	CCWGG	2 cut(s)	111, 282
BseCI	ATCGAT	2 cut(s)	578, 582
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	2 cut(s)	26, 101
BseLI	CCNNNNNNNGG	2 cut(s)	240, 369
BseNI	ACTGG	1 cut(s)	606
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	18
Bsh1285I	CGRYCG	1 cut(s)	582
BshFI	GGCC	2 cut(s)	362, 482
BshNI	GGYRCC	1 cut(s)	445
BshVI	ATCGAT	2 cut(s)	578, 582
BsiEI	CGRYCG	1 cut(s)	582
BsiSI	CCGG	3 cut(s)	89, 449, 460
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	2 cut(s)	240, 369
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	2 cut(s)	362, 482
Bsp119I	TTCGAA	1 cut(s)	526
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	579
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	2 cut(s)	362, 482
BspDI	ATCGAT	2 cut(s)	578, 582
BspLI	GGNNCC	1 cut(s)	447
BspT104I	TTCGAA	1 cut(s)	526
BspT107I	GGYRCC	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	606
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	1 cut(s)	579
BssSI	CACGAG	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	142
Bst2UI	CCWGG	2 cut(s)	111, 282
BstBI	TTCGAA	1 cut(s)	526
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	1 cut(s)	474
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	2 cut(s)	26, 101
BstKTI	GATC	1 cut(s)	582
BstMBI	GATC	1 cut(s)	579
BstMCI	CGRYCG	1 cut(s)	582
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 194, 479, 602
BstNI	CCWGG	2 cut(s)	111, 282
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	2 cut(s)	109, 280
BstSLI	GKGCMC	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	572
BstXI	CCANNNNNNTGG	1 cut(s)	490
Bsu15I	ATCGAT	2 cut(s)	578, 582
BsuRI	GGCC	2 cut(s)	362, 482
BsuTUI	ATCGAT	2 cut(s)	578, 582
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	2 cut(s)	26, 101
BtsI	GCAGTG	2 cut(s)	83, 309
BtsIMutI	CAGTG	2 cut(s)	83, 309
Cac8I	GCNNGC	1 cut(s)	457
Cfr10I	RCCGGY	1 cut(s)	88
ClaI	ATCGAT	2 cut(s)	578, 582
Csp6I	GTAC	3 cut(s)	376, 550, 556
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	4 cut(s)	343, 352, 364, 502
CviQI	GTAC	3 cut(s)	376, 550, 556
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	1 cut(s)	581
DpnII	GATC	1 cut(s)	579
EaeI	YGGCCR	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	363
EcoRII	CCWGG	2 cut(s)	109, 280
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	4 cut(s)	346, 355, 367, 505
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	4 cut(s)	342, 351, 363, 501
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	2 cut(s)	13, 88
Fsp4HI	GCNGC	1 cut(s)	7
FspBI	CTAG	2 cut(s)	230, 309
GluI	GCNGC	1 cut(s)	7
HaeIII	GGCC	2 cut(s)	362, 482
HapII	CCGG	3 cut(s)	89, 449, 460
Hin1II	CATG	4 cut(s)	346, 355, 367, 505
HinfI	GANTC	2 cut(s)	145, 545
HpaII	CCGG	3 cut(s)	89, 449, 460
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	2 cut(s)	13, 293
HpyAV	CCTTC	3 cut(s)	40, 323, 529
HpyCH4IV	ACGT	2 cut(s)	268, 378
HpyCH4V	TGCA	2 cut(s)	302, 596
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 194, 479, 602
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	2 cut(s)	268, 378
Hsp92II	CATG	4 cut(s)	346, 355, 367, 505
Kzo9I	GATC	1 cut(s)	579
LpnPI	CCDG	8 cut(s)	96, 102, 123, 267, 294, 462, 473, 587
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	110, 289
MaeI	CTAG	2 cut(s)	230, 309
MaeII	ACGT	2 cut(s)	268, 378
MaeIII	GTNAC	3 cut(s)	49, 71, 160
MalI	GATC	1 cut(s)	581
MboI	GATC	1 cut(s)	579
MboII	GAAGA	4 cut(s)	128, 162, 308, 577
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	6 cut(s)	38, 64, 156, 238, 439, 488
MlyI	GAGTC	1 cut(s)	154
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	4 cut(s)	44, 339, 352, 366
MspI	CCGG	3 cut(s)	89, 449, 460
MspR9I	CCNGG	2 cut(s)	111, 282
MvaI	CCWGG	2 cut(s)	111, 282
MwoI	GCNNNNNNNGC	4 cut(s)	185, 194, 479, 602
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	1 cut(s)	579
NlaIII	CATG	4 cut(s)	346, 355, 367, 505
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	3 cut(s)	49, 71, 160
NspI	RCATGY	1 cut(s)	355
NspV	TTCGAA	1 cut(s)	526
PciI	ACATGT	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	545
PflMI	CCANNNNNTGG	1 cut(s)	369
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	8
Ple19I	CGATCG	1 cut(s)	582
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
PscI	ACATGT	1 cut(s)	351
PsiI	TTATAA	1 cut(s)	260
Psp1406I	AACGTT	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	109, 280
PspGI	CCWGG	2 cut(s)	109, 280
PspN4I	GGNNCC	1 cut(s)	447
PvuI	CGATCG	1 cut(s)	582
RsaI	GTAC	3 cut(s)	377, 551, 557
RsaNI	GTAC	3 cut(s)	376, 550, 556
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	1 cut(s)	579
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	2 cut(s)	111, 282
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	7 cut(s)	11, 271, 377, 381, 457, 513, 540
SfaNI	GCATC	2 cut(s)	110, 289
SfuI	TTCGAA	1 cut(s)	526
Sse9I	AATT	6 cut(s)	38, 64, 156, 238, 439, 488
SsiI	CCGC	1 cut(s)	221
SspMI	CTAG	2 cut(s)	230, 309
StyD4I	CCNGG	2 cut(s)	109, 280
StyI	CCWWGG	1 cut(s)	363
TaiI	ACGT	2 cut(s)	271, 381
TaqI	TCGA	5 cut(s)	148, 276, 526, 578, 582
TasI	AATT	6 cut(s)	38, 64, 156, 238, 439, 488
TatI	WGTACW	1 cut(s)	555
TfiI	GAWTC	1 cut(s)	545
TscAI	CASTG	2 cut(s)	90, 309
TseFI	GTSAC	3 cut(s)	49, 71, 160
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	3 cut(s)	49, 71, 160
TspDTI	ATGAA	2 cut(s)	501, 558
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	2 cut(s)	90, 309
Van91I	CCANNNNNTGG	1 cut(s)	369
XapI	RAATTY	2 cut(s)	64, 439
XceI	RCATGY	1 cut(s)	355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XspI	CTAG	2 cut(s)	230, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.