AT1G15200

protein-protein interaction regulator family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007408
Physical Location & Seq
Reverse (-)
5228300 .. 5231184
2885 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15200.2

Sequence Viewer

Length: 1272 bp
ATGGGAGACACCGCCTTGGAGAAGACAGCGGAAGAGCTACGGCATGAGATCGATGAGCTTCACCGTCAACAGCGTGAGATTACGGAGAGGCTTCGTGACCCTCGTGGACTCCGCCGTGGAGGCTTCTCAAACGTCGCTCCTCGCAACCAAGGCCGTAGAGGCTTTCCTCGACCTGCGGAGAGGAATGACGTAGAAGACGAGCCTCCTGCTAAAAGGAGATTGTCTTCCGCCGTTGTTAAGGTCGACGGTGAAGATGTTAGTAAAGATGGAGAATTTCCAGTTGATGGTAATGGAACCCAGGTTAAAGTTGGTGAGAATGGGACTTCTGATCAAAGTGACAAGAAGCAATCTGGTCTTCATCGTGGAAGTTGGTCCCAGAGAGATGCAGAACAACGACGGACCAATAAGCGTTACGAAGCTTTTGCATTGCCGGAGCCTGCACCAAGGGTTTTACCTAAGAATGAGGATCCTAAACTGGTTAATAGGAACAGAAGAATGCTAGGGAATCTTCTAGGGACTTTGGAGAAGTTCAGAAAAGAAGATAAGCAGCGTTCTGGAACAGATGCATACGCCCGACGAACTGCAGCTCTACAAAGGGCGGAGGAAAAGGCTCGTGAAGAAAGTGAACGACTGAGGCTGCAGGAGCGTGAAAATTTGACTGAAAAGAGGAGAAGAGATCTTACTCTTCGGGCTCGTGTTGCTGCTAAAGCAGAACAAAAGAAATTGGAATTGCTTTTCCTTCAATGGAGTGAGCACCAAAAGAAACTTAGCAATTTTATAAGGACTAAAGCAGAGCCACGGATATACTATGCACCAGTGAAGCCTTTGGAAGAAGATACAAGTGAGGTAGAACAACAGAAAGAGCGGACATTCTTAGAATGGAAGGCAGCAAGGAGACAAGAAGTGAGTGAGTATCAAAAGGAGATAGAAGAGCAGTGTCTGGGTAATGTTGAGAAAGAGCTGGAGAGGTGGCAAAACGCAAGGAAGGCAAGGAAAGCAAACAACGAGGGTATGAATTTGCAGGAAACGATGGACAAGGAATTAGAGACTCATAGGATGGAGCATGGGCCAAAGAAGAGAAAGATACCTGGAGGAGGAGTAGGAGATGAAGATGAAGAAGATGAAGTAGAGGATATCAATGGTGGAGAGGATGAAATGATAATGGATGATTTACTGGAGGAGGGAGGAGATGGAACCATCAAGGAGGAAGTGGCAACTGATACAGTTAAAGCAGAAGCAGTGGAGGAAGATATTAAACATGAGGTTCTCTAA

Protein Analysis

423

Amino Acids

48.9

Weight (kDa)

5.6

Isoelectric Point (pI)

60.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pinin_SDK_memA PF04696 160 - 293 1.1e-24 pinin/SDK/memA/ protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 779
Acc36I ACCTGC 1 cut(s) 181
AccB7I CCANNNNNTGG 1 cut(s) 284
AccBSI CCGCTC 1 cut(s) 865
AccI GTMKAC 1 cut(s) 243
AciI CCGC 7 cut(s) 12, 29, 112, 176, 228, 599, 865
AclWI GGATC 2 cut(s) 461, 474
AcsI RAATTY 3 cut(s) 272, 652, 1015
AfiI CCNNNNNNNGG 2 cut(s) 284, 1094
AgsI TTSAA 1 cut(s) 743
AjnI CCWGG 2 cut(s) 297, 1087
AluBI AGCT 5 cut(s) 37, 58, 419, 587, 961
AluI AGCT 5 cut(s) 37, 58, 419, 587, 961
Alw21I GWGCWC 1 cut(s) 756
Alw26I GTCTC 2 cut(s) 889, 1040
AlwI GGATC 2 cut(s) 461, 474
AlwNI CAGNNNCTG 1 cut(s) 940
AoxI GGCC 2 cut(s) 151, 1067
ApeKI GCWGC 5 cut(s) 547, 584, 637, 701, 887
ApoI RAATTY 3 cut(s) 272, 652, 1015
AspS9I GGNCC 3 cut(s) 372, 399, 1067
AsuHPI GGTGA 3 cut(s) 53, 260, 323
AvaII GGWCC 2 cut(s) 372, 399
BamHI GGATCC 1 cut(s) 466
BanII GRGCYC 1 cut(s) 694
BarI GAAGNNNNNNTAC 2 cut(s) 664, 696
BauI CACGAG 3 cut(s) 102, 612, 693
BbsI GAAGAC 4 cut(s) 29, 201, 216, 347
Bbv12I GWGCWC 1 cut(s) 756
BbvI GCAGC 5 cut(s) 559, 596, 624, 688, 899
BccI CCATC 6 cut(s) 260, 278, 1024, 1051, 1184, 1205
BceAI ACGGC 4 cut(s) 56, 99, 138, 215
BcgI CGANNNNNNTGC 4 cut(s) 188, 222, 404, 438
BciT130I CCWGG 2 cut(s) 299, 1089
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 889, 1040
BfaI CTAG 2 cut(s) 500, 512
BfmI CTRYAG 2 cut(s) 582, 638
BfuAI ACCTGC 1 cut(s) 181
BglI GCCNNNNNGGC 2 cut(s) 120, 159
BglII AGATCT 1 cut(s) 676
BisI GCNGC 5 cut(s) 548, 585, 638, 702, 888
BlsI GCNGC 5 cut(s) 549, 586, 639, 703, 889
Bme1390I CCNGG 2 cut(s) 299, 1089
Bme18I GGWCC 2 cut(s) 372, 399
BmgT120I GGNCC 3 cut(s) 372, 399, 1067
BmiI GGNNCC 5 cut(s) 295, 374, 435, 468, 1195
BmrFI CCNGG 2 cut(s) 299, 1089
BmsI GCATC 2 cut(s) 373, 553
BpiI GAAGAC 4 cut(s) 29, 201, 216, 347
BpmI CTGGAG 3 cut(s) 983, 1110, 1196
Bsa29I ATCGAT 1 cut(s) 51
BsaJI CCNNGG 6 cut(s) 15, 115, 148, 297, 443, 797
BsaXI ACNNNNNCTCC 2 cut(s) 1083, 1113
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 1094
Bse1I ACTGG 4 cut(s) 278, 480, 815, 1179
Bse3DI GCAATG 1 cut(s) 425
BseBI CCWGG 2 cut(s) 299, 1089
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 6 cut(s) 15, 115, 148, 297, 443, 797
BseGI GGATG 3 cut(s) 1062, 1156, 1171
BseLI CCNNNNNNNGG 2 cut(s) 284, 1094
BseMI GCAATG 1 cut(s) 425
BseMII CTCAG 1 cut(s) 623
BseNI ACTGG 4 cut(s) 278, 480, 815, 1179
BseRI GAGGAG 6 cut(s) 129, 682, 1107, 1110, 1193, 1200
BseXI GCAGC 5 cut(s) 559, 596, 624, 688, 899
BsgI GTGCAG 1 cut(s) 423
BshFI GGCC 2 cut(s) 153, 1069
BshVI ATCGAT 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 756
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 3 cut(s) 334, 358, 529
BslI CCNNNNNNNGG 2 cut(s) 284, 1094
BsmAI GTCTC 2 cut(s) 889, 1040
BsmFI GGGAC 3 cut(s) 334, 358, 529
BsmI GAATGC 1 cut(s) 501
BsnI GGCC 2 cut(s) 153, 1069
Bsp1286I GDGCHC 2 cut(s) 694, 756
Bsp143I GATC 4 cut(s) 48, 328, 466, 676
BspACI CCGC 7 cut(s) 12, 29, 112, 176, 228, 599, 865
BspANI GGCC 2 cut(s) 153, 1069
BspCNI CTCAG 1 cut(s) 624
BspDI ATCGAT 1 cut(s) 51
BspLI GGNNCC 5 cut(s) 295, 374, 435, 468, 1195
BspMAI CTGCAG 2 cut(s) 586, 642
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 2 cut(s) 461, 474
BspQI GCTCTTC 2 cut(s) 27, 924
BsrBI CCGCTC 1 cut(s) 865
BsrDI GCAATG 1 cut(s) 425
BsrI ACTGG 4 cut(s) 278, 480, 815, 1179
BssECI CCNNGG 6 cut(s) 15, 115, 148, 297, 443, 797
BssMI GATC 4 cut(s) 48, 328, 466, 676
BssSI CACGAG 3 cut(s) 102, 612, 693
BssT1I CCWWGG 3 cut(s) 15, 148, 443
Bst2BI CACGAG 3 cut(s) 102, 612, 693
Bst2UI CCWGG 2 cut(s) 299, 1089
Bst4CI ACNGT 3 cut(s) 65, 248, 1225
Bst6I CTCTTC 5 cut(s) 27, 667, 690, 924, 1070
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 4 cut(s) 456, 632, 767, 874
BstDSI CCRYGG 2 cut(s) 115, 797
BstENI CCTNNNNNAGG 1 cut(s) 1092
BstF5I GGATG 3 cut(s) 1062, 1156, 1171
BstKTI GATC 4 cut(s) 51, 331, 469, 679
BstMAI GTCTC 2 cut(s) 889, 1040
BstMBI GATC 4 cut(s) 48, 328, 466, 676
BstMWI GCNNNNNNNGC 8 cut(s) 120, 150, 159, 643, 698, 707, 986, 995
BstNI CCWGG 2 cut(s) 299, 1089
BstSCI CCNGG 2 cut(s) 297, 1087
BstSFI CTRYAG 2 cut(s) 582, 638
BstV1I GCAGC 5 cut(s) 559, 596, 624, 688, 899
BstV2I GAAGAC 4 cut(s) 29, 201, 216, 347
BstX2I RGATCY 2 cut(s) 466, 676
BstYI RGATCY 2 cut(s) 466, 676
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 2 cut(s) 153, 1069
BsuTUI ATCGAT 1 cut(s) 51
BtgI CCRYGG 2 cut(s) 115, 797
BtsCI GGATG 3 cut(s) 1062, 1156, 1171
BtsI GCAGTG 2 cut(s) 941, 1245
BtsIMutI CAGTG 3 cut(s) 822, 941, 1245
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 438
CaiI CAGNNNCTG 1 cut(s) 940
Cfr13I GGNCC 3 cut(s) 372, 399, 1067
ClaI ATCGAT 1 cut(s) 51
CviAII CATG 3 cut(s) 44, 1064, 1259
DdeI CTNAG 4 cut(s) 456, 632, 767, 874
DpnI GATC 4 cut(s) 50, 330, 468, 678
DpnII GATC 4 cut(s) 48, 328, 466, 676
Eam1104I CTCTTC 5 cut(s) 27, 667, 690, 924, 1070
EarI CTCTTC 5 cut(s) 27, 667, 690, 924, 1070
EciI GGCGGA 3 cut(s) 101, 217, 614
Eco130I CCWWGG 3 cut(s) 15, 148, 443
Eco24I GRGCYC 1 cut(s) 694
Eco32I GATATC 1 cut(s) 1135
Eco47I GGWCC 2 cut(s) 372, 399
EcoNI CCTNNNNNAGG 1 cut(s) 1092
EcoRII CCWGG 2 cut(s) 297, 1087
EcoRV GATATC 1 cut(s) 1135
EcoT14I CCWWGG 3 cut(s) 15, 148, 443
EcoT22I ATGCAT 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 694
ErhI CCWWGG 3 cut(s) 15, 148, 443
FaeI CATG 3 cut(s) 47, 1067, 1262
FaiI YATR 9 cut(s) 45, 568, 779, 805, 810, 1013, 1053, 1065, 1260
FaqI GGGAC 3 cut(s) 334, 358, 529
FatI CATG 3 cut(s) 43, 1063, 1258
FbaI TGATCA 1 cut(s) 328
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 5 cut(s) 548, 585, 638, 702, 888
FokI GGATG 3 cut(s) 1069, 1163, 1178
FriOI GRGCYC 1 cut(s) 694
Fsp4HI GCNGC 5 cut(s) 548, 585, 638, 702, 888
FspBI CTAG 2 cut(s) 500, 512
GluI GCNGC 5 cut(s) 548, 585, 638, 702, 888
GsuI CTGGAG 3 cut(s) 983, 1110, 1196
HaeIII GGCC 2 cut(s) 153, 1069
HapII CCGG 1 cut(s) 431
Hin1II CATG 3 cut(s) 47, 1067, 1262
HincII GTYRAC 2 cut(s) 68, 244
HindII GTYRAC 2 cut(s) 68, 244
HindIII AAGCTT 1 cut(s) 417
HinfI GANTC 3 cut(s) 108, 505, 1048
HpaII CCGG 1 cut(s) 431
HphI GGTGA 3 cut(s) 53, 260, 323
Hpy166II GTNNAC 4 cut(s) 68, 107, 244, 626
Hpy188I TCNGA 2 cut(s) 328, 533
Hpy188III TCNNGA 3 cut(s) 95, 555, 614
Hpy8I GTNNAC 4 cut(s) 68, 107, 244, 626
Hpy99I CGWCG 4 cut(s) 137, 248, 399, 579
HpyAV CCTTC 3 cut(s) 749, 877, 979
HpyCH4III ACNGT 3 cut(s) 65, 248, 1225
HpyCH4IV ACGT 2 cut(s) 132, 189
HpyCH4V TGCA 8 cut(s) 386, 425, 440, 566, 584, 640, 812, 1021
HpyF10VI GCNNNNNNNGC 8 cut(s) 120, 150, 159, 643, 698, 707, 986, 995
HpyF3I CTNAG 4 cut(s) 456, 632, 767, 874
HpySE526I ACGT 2 cut(s) 132, 189
Hsp92II CATG 3 cut(s) 47, 1067, 1262
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 4 cut(s) 48, 328, 466, 676
LguI GCTCTTC 2 cut(s) 27, 924
LmnI GCTCC 4 cut(s) 142, 433, 643, 1060
Lsp1109I GCAGC 5 cut(s) 559, 596, 624, 688, 899
LweI GCATC 2 cut(s) 373, 553
MaeI CTAG 2 cut(s) 500, 512
MaeII ACGT 2 cut(s) 132, 189
MaeIII GTNAC 3 cut(s) 95, 335, 410
MalI GATC 4 cut(s) 50, 330, 468, 678
MbiI CCGCTC 1 cut(s) 865
MboI GATC 4 cut(s) 48, 328, 466, 676
MflI RGATCY 2 cut(s) 466, 676
MhlI GDGCHC 2 cut(s) 694, 756
MluCI AATT 7 cut(s) 272, 652, 722, 728, 772, 1015, 1040
MlyI GAGTC 2 cut(s) 102, 1042
Mph1103I ATGCAT 1 cut(s) 568
MseI TTAA 5 cut(s) 237, 303, 480, 1227, 1254
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 2 cut(s) 299, 1089
Mva1269I GAATGC 1 cut(s) 501
MvaI CCWGG 2 cut(s) 299, 1089
MwoI GCNNNNNNNGC 8 cut(s) 120, 150, 159, 643, 698, 707, 986, 995
NdeII GATC 4 cut(s) 48, 328, 466, 676
NlaIII CATG 3 cut(s) 47, 1067, 1262
NlaIV GGNNCC 5 cut(s) 295, 374, 435, 468, 1195
NmuCI GTSAC 2 cut(s) 95, 335
NsiI ATGCAT 1 cut(s) 568
PciSI GCTCTTC 2 cut(s) 27, 924
PcsI WCGNNNNNNNCGW 2 cut(s) 100, 195
PctI GAATGC 1 cut(s) 501
PfeI GAWTC 1 cut(s) 505
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 5 cut(s) 549, 586, 639, 703, 889
PleI GAGTC 2 cut(s) 102, 1042
PpsI GAGTC 2 cut(s) 102, 1042
PsiI TTATAA 1 cut(s) 779
Psp6I CCWGG 2 cut(s) 297, 1087
PspGI CCWGG 2 cut(s) 297, 1087
PspN4I GGNNCC 5 cut(s) 295, 374, 435, 468, 1195
PspPI GGNCC 3 cut(s) 372, 399, 1067
PstI CTGCAG 2 cut(s) 586, 642
PstNI CAGNNNCTG 1 cut(s) 940
PsuI RGATCY 2 cut(s) 466, 676
SalI GTCGAC 1 cut(s) 242
SapI GCTCTTC 2 cut(s) 27, 924
SaqAI TTAA 5 cut(s) 237, 303, 480, 1227, 1254
SatI GCNGC 5 cut(s) 548, 585, 638, 702, 888
Sau3AI GATC 4 cut(s) 48, 328, 466, 676
Sau96I GGNCC 3 cut(s) 372, 399, 1067
SchI GAGTC 2 cut(s) 102, 1042
ScrFI CCNGG 2 cut(s) 299, 1089
SduI GDGCHC 2 cut(s) 694, 756
SfaNI GCATC 2 cut(s) 373, 553
SfcI CTRYAG 2 cut(s) 582, 638
SinI GGWCC 2 cut(s) 372, 399
Sse9I AATT 7 cut(s) 272, 652, 722, 728, 772, 1015, 1040
SsiI CCGC 7 cut(s) 12, 29, 112, 176, 228, 599, 865
SspMI CTAG 2 cut(s) 500, 512
StyD4I CCNGG 2 cut(s) 297, 1087
StyI CCWWGG 3 cut(s) 15, 148, 443
TaaI ACNGT 3 cut(s) 65, 248, 1225
TaiI ACGT 2 cut(s) 135, 192
TaqI TCGA 3 cut(s) 51, 169, 243
TasI AATT 7 cut(s) 272, 652, 722, 728, 772, 1015, 1040
TfiI GAWTC 1 cut(s) 505
Tru1I TTAA 5 cut(s) 237, 303, 480, 1227, 1254
Tru9I TTAA 5 cut(s) 237, 303, 480, 1227, 1254
TscAI CASTG 3 cut(s) 822, 941, 1245
TseFI GTSAC 2 cut(s) 95, 335
TseI GCWGC 5 cut(s) 547, 584, 637, 701, 887
Tsp45I GTSAC 2 cut(s) 95, 335
TspDTI ATGAA 6 cut(s) 347, 1028, 1122, 1128, 1137, 1167
TspGWI ACGGA 3 cut(s) 98, 412, 814
TspRI CASTG 3 cut(s) 822, 941, 1245
Van91I CCANNNNNTGG 1 cut(s) 284
VpaK11BI GGWCC 2 cut(s) 372, 399
XagI CCTNNNNNAGG 1 cut(s) 1092
XapI RAATTY 3 cut(s) 272, 652, 1015
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 243
XspI CTAG 2 cut(s) 500, 512
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.