Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007408

Physical Location & Seq

Genomic Coordinates Forward (+)

46100363 .. 46106331

Gene Structure 5969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G564400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGGAAGCGCCGCAGTTGAGAAAACAGAGGAGGACCTCCGTAAGGAGATCGATGAACTCCAACGGCAACAGCGCGAGATTACGGAACGGCTTCGAGACCCTAGGGGACTTCGCAAGGGAGGCTTGGCGGCTGCTGGTCCTCGCAATTTTGCCGCCAATGGTGCTCGTCCGCGAGGCTTTACTCGACCCGCAGATAGGCCTGATGAGGATCAACCTCCTGCAAAACGCCGGCTTTCATCAGCTGTTGTCAAGGTGGAGGATGGAGAAATCACTGAAATTGCTGAAGAGGCCAAGGATGGGAAGAAGAATGATACAAATGAGGAAGCTAAAGCTGATCAGAGTGATAGGAAGTTGTCCAATTCCCAACAAAGTGGCTGGTCAAAGAGGGATGGAAATCACGGAGCAGCAAAGAAGGATTTTGAAATTCCAGCACCAGATCATGTTCCAAGAGTATTGCCGAAAGAGCAGGATCCCAGCTTGGTTAACAGGAACAAAAGAATGCTAGGACAACTTTTGGGGACTCTAGAGAAATTCAGGAAAGAGGACATGCAACTTTCAGGAACAGAGGCGTTCATGCGGAGATCAAATTCATTACAAAGAGCTGAGCAAAGGGCTCGTGAAGAGAGTGAAAGACTTAGGCAACAAGAGCGTGAACAAATTGCGGAAAAGCGGAGGAGAGATCTGACTCTGCGGGCACGTGTTAATGCCAAGACGGAAGAAAAGAGATTGGAACTGCTTTTTCTTCAGTGGAGTGAGCATAATAAAAAACTTTGCAATTTTATAAGGACAAAGGCAGAGCCTCCAATATATTATCTGCCCAAGAAACCATTGGATGAGGATCCTACGTTAGCTGAGCAGCGAAAAGAAAAGGAGTTTCTGGAATGGAAAGCTGCACGAAGAGAGGAACTGACTGAGTATCAGAAGCAGATTGGGGAGCAGTGTATTGCCAATGCTGAAAAGGAGTTGGAGAGGTGGCAAAATGCAAGGAAACCAAGGAAAGCAAACAATGATGTGATGAACTTACAGGAAACTATGGACAAAGAATTGGACACACATAGGCTTGAGCATGGCCCCAAGAAAAGAAAGATCCCTGATGGAAGCAACAACGATGAAGATGAGGATGATGTGGAAGATATCAATGTAGCAGAGGACTACATGATTGATGATGTGCTAGATGTTGATGATAACAGCCGGAGGATTGATGAAATAGTTAAACCAGAAGCAGGTAAAACCAGTCCAAATGCGGATGCTGTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

Pinin_SDK_memA

Protein Analysis

420

Amino Acids

48.44

Weight (kDa)

5.7

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15200 AT1G15200 AT1G15200 AT1G15200
fragaria_vesca	FvH4_5g29810 FvH4_5g29810 FvH4_5g29810 FvH4_5g29810 FvH4_5g29810 FvH4_5g29810
malus_domestica	MD08G1227300.v1.1 MD15G1419700.v1.1
prunus_persica	Prupe.1G564400_v2.0.a1
pyrus_communis	pycom08g19830 pycom15g37250
rosa_chinensis	RchiOBHm_Chr7g0223331
rosa_laevigata	RLG00000001987
rosa_multiflora	Rmu_sc0005124.1_g000020
rosa_roxburghii	Rroxscaffold_3G00235910
rosa_rugosa	Rorug07G0216100
rosa_samantha	Rh7AG359800 Rh7BG349700 Rh7CG378200 Rh7DG355100
rosa_wichuraiana	Rw7G030580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	782
Acc36I	ACCTGC	1 cut(s)	1214
AccII	CGCG	2 cut(s)	75, 172
AclWI	GGATC	6 cut(s)	216, 464, 477, 833, 846, 1081
AcsI	RAATTY	3 cut(s)	423, 530, 586
AcuI	CTGAAG	2 cut(s)	303, 728
AcvI	CACGTG	1 cut(s)	698
AfiI	CCNNNNNNNGG	4 cut(s)	43, 195, 297, 1223
AflIII	ACRYGT	1 cut(s)	697
AgsI	TTSAA	1 cut(s)	422
AluBI	AGCT	7 cut(s)	242, 326, 332, 477, 602, 851, 890
AluI	AGCT	7 cut(s)	242, 326, 332, 477, 602, 851, 890
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	6 cut(s)	216, 464, 477, 833, 846, 1081
AoxI	GGCC	3 cut(s)	197, 288, 1069
ApeKI	GCWGC	4 cut(s)	131, 404, 856, 890
ApoI	RAATTY	3 cut(s)	423, 530, 586
Asp700I	GAANNNNTTC	1 cut(s)	90
AspA2I	CCTAGG	1 cut(s)	101
AspLEI	GCGC	2 cut(s)	11, 75
AspS9I	GGNCC	3 cut(s)	34, 137, 1070
AvaII	GGWCC	2 cut(s)	34, 137
AvrII	CCTAGG	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	697
BamHI	GGATCC	2 cut(s)	469, 838
BanII	GRGCYC	1 cut(s)	616
BauI	CACGAG	1 cut(s)	615
BbrPI	CACGTG	1 cut(s)	698
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	4 cut(s)	118, 416, 868, 877
BccI	CCATC	4 cut(s)	254, 290, 383, 1088
BceAI	ACGGC	2 cut(s)	80, 104
BcgI	CGANNNNNNTGC	2 cut(s)	596, 630
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	4 cut(s)	102, 503, 524, 1172
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	1214
BglII	AGATCT	1 cut(s)	679
BisI	GCNGC	7 cut(s)	12, 129, 132, 153, 405, 857, 891
BlnI	CCTAGG	1 cut(s)	101
BlpI	GCTNAGC	2 cut(s)	603, 852
BlsI	GCNGC	7 cut(s)	13, 130, 133, 154, 406, 858, 892
Bme18I	GGWCC	2 cut(s)	34, 137
BmgT120I	GGNCC	3 cut(s)	34, 137, 1070
BmiI	GGNNCC	3 cut(s)	471, 840, 1072
BmsI	GCATC	1 cut(s)	1237
Bpu1102I	GCTNAGC	2 cut(s)	603, 852
BpuEI	CTTGAG	1 cut(s)	1082
Bsa29I	ATCGAT	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	698
BsaBI	GATNNNNATC	3 cut(s)	207, 393, 837
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	101, 291, 992
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 195, 297, 1223
Bse118I	RCCGGY	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	1233
Bse8I	GATNNNNATC	3 cut(s)	207, 393, 837
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	3 cut(s)	101, 291, 992
BseGI	GGATG	6 cut(s)	265, 301, 394, 838, 1126, 1252
BseJI	GATNNNNATC	3 cut(s)	207, 393, 837
BseLI	CCNNNNNNNGG	4 cut(s)	43, 195, 297, 1223
BseMII	CTCAG	3 cut(s)	594, 843, 903
BseNI	ACTGG	1 cut(s)	1233
BseRI	GAGGAG	2 cut(s)	44, 688
BseSI	GKGCMC	1 cut(s)	697
BseXI	GCAGC	4 cut(s)	118, 416, 868, 877
BseYI	CCCAGC	1 cut(s)	473
BsgI	GTGCAG	1 cut(s)	876
Bsh1236I	CGCG	2 cut(s)	75, 172
BshFI	GGCC	3 cut(s)	199, 290, 1071
BshVI	ATCGAT	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	229, 1192
BslFI	GGGAC	2 cut(s)	120, 532
BslI	CCNNNNNNNGG	4 cut(s)	43, 195, 297, 1223
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	2 cut(s)	120, 532
BsmI	GAATGC	1 cut(s)	504
BsnI	GGCC	3 cut(s)	199, 290, 1071
Bso31I	GGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	3 cut(s)	166, 616, 697
Bsp143I	GATC	9 cut(s)	48, 208, 334, 436, 469, 581, 679, 838, 1086
Bsp1720I	GCTNAGC	2 cut(s)	603, 852
BspANI	GGCC	3 cut(s)	199, 290, 1071
BspCNI	CTCAG	3 cut(s)	595, 844, 904
BspDI	ATCGAT	1 cut(s)	51
BspFNI	CGCG	2 cut(s)	75, 172
BspLI	GGNNCC	3 cut(s)	471, 840, 1072
BspMI	ACCTGC	1 cut(s)	1214
BspPI	GGATC	6 cut(s)	216, 464, 477, 833, 846, 1081
BspTNI	GGTCTC	1 cut(s)	90
BsrFI	RCCGGY	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	1233
BssAI	RCCGGY	1 cut(s)	228
BssECI	CCNNGG	3 cut(s)	101, 291, 992
BssMI	GATC	9 cut(s)	48, 208, 334, 436, 469, 581, 679, 838, 1086
BssSI	CACGAG	1 cut(s)	615
BssT1I	CCWWGG	3 cut(s)	101, 291, 992
Bst2BI	CACGAG	1 cut(s)	615
Bst6I	CTCTTC	3 cut(s)	279, 615, 892
BstBAI	YACGTR	1 cut(s)	698
BstC8I	GCNNGC	2 cut(s)	230, 693
BstDEI	CTNAG	4 cut(s)	603, 635, 852, 912
BstENI	CCTNNNNNAGG	1 cut(s)	41
BstF5I	GGATG	6 cut(s)	265, 301, 394, 838, 1126, 1252
BstFNI	CGCG	2 cut(s)	75, 172
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 75
BstKTI	GATC	9 cut(s)	51, 211, 337, 439, 472, 584, 682, 841, 1089
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	9 cut(s)	48, 208, 334, 436, 469, 581, 679, 838, 1086
BstMWI	GCNNNNNNNGC	5 cut(s)	120, 161, 287, 463, 646
BstNSI	RCATGY	1 cut(s)	550
BstSLI	GKGCMC	1 cut(s)	697
BstUI	CGCG	2 cut(s)	75, 172
BstV1I	GCAGC	4 cut(s)	118, 416, 868, 877
BstX2I	RGATCY	4 cut(s)	469, 679, 838, 1086
BstXI	CCANNNNNNTGG	1 cut(s)	371
BstYI	RGATCY	4 cut(s)	469, 679, 838, 1086
Bsu15I	ATCGAT	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	199, 290, 1071
BsuTUI	ATCGAT	1 cut(s)	51
BtsCI	GGATG	6 cut(s)	265, 301, 394, 838, 1126, 1252
BtsI	GCAGTG	1 cut(s)	944
BtsIMutI	CAGTG	3 cut(s)	270, 752, 944
BveI	ACCTGC	1 cut(s)	1214
Cac8I	GCNNGC	2 cut(s)	230, 693
CfoI	GCGC	2 cut(s)	11, 75
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	3 cut(s)	34, 137, 1070
ClaI	ATCGAT	1 cut(s)	51
CviAII	CATG	5 cut(s)	440, 547, 574, 1067, 1156
DdeI	CTNAG	4 cut(s)	603, 635, 852, 912
DpnI	GATC	9 cut(s)	50, 210, 336, 438, 471, 583, 681, 840, 1088
DpnII	GATC	9 cut(s)	48, 208, 334, 436, 469, 581, 679, 838, 1086
Eam1104I	CTCTTC	3 cut(s)	279, 615, 892
EarI	CTCTTC	3 cut(s)	279, 615, 892
Eco130I	CCWWGG	3 cut(s)	101, 291, 992
Eco147I	AGGCCT	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	616
Eco31I	GGTCTC	1 cut(s)	90
Eco32I	GATATC	1 cut(s)	1135
Eco47I	GGWCC	2 cut(s)	34, 137
Eco57I	CTGAAG	2 cut(s)	303, 728
Eco72I	CACGTG	1 cut(s)	698
EcoNI	CCTNNNNNAGG	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRV	GATATC	1 cut(s)	1135
EcoT14I	CCWWGG	3 cut(s)	101, 291, 992
EcoT38I	GRGCYC	1 cut(s)	616
ErhI	CCWWGG	3 cut(s)	101, 291, 992
FaeI	CATG	5 cut(s)	443, 550, 577, 1070, 1159
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	2 cut(s)	120, 532
FatI	CATG	5 cut(s)	439, 546, 573, 1066, 1155
FauI	CCCGC	2 cut(s)	196, 684
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	7 cut(s)	12, 129, 132, 153, 405, 857, 891
FokI	GGATG	5 cut(s)	272, 308, 401, 845, 1133
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	7 cut(s)	12, 129, 132, 153, 405, 857, 891
FspBI	CTAG	4 cut(s)	102, 503, 524, 1172
GlaI	GCGC	2 cut(s)	10, 74
GluI	GCNGC	7 cut(s)	12, 129, 132, 153, 405, 857, 891
GsaI	CCCAGC	1 cut(s)	477
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	199, 290, 1071
HapII	CCGG	2 cut(s)	229, 1192
HhaI	GCGC	2 cut(s)	11, 75
Hin1II	CATG	5 cut(s)	443, 550, 577, 1070, 1159
Hin6I	GCGC	2 cut(s)	9, 73
HinP1I	GCGC	2 cut(s)	9, 73
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	2 cut(s)	520, 685
HpaI	GTTAAC	1 cut(s)	484
HpaII	CCGG	2 cut(s)	229, 1192
Hpy166II	GTNNAC	2 cut(s)	484, 653
Hpy188I	TCNGA	3 cut(s)	339, 684, 921
Hpy188III	TCNNGA	6 cut(s)	95, 524, 535, 558, 617, 878
Hpy8I	GTNNAC	2 cut(s)	484, 653
HpyAV	CCTTC	1 cut(s)	406
HpyCH4IV	ACGT	2 cut(s)	697, 845
HpyCH4V	TGCA	5 cut(s)	221, 550, 774, 893, 983
HpyF10VI	GCNNNNNNNGC	5 cut(s)	120, 161, 287, 463, 646
HpyF3I	CTNAG	4 cut(s)	603, 635, 852, 912
HpySE526I	ACGT	2 cut(s)	697, 845
Hsp92II	CATG	5 cut(s)	443, 550, 577, 1070, 1159
HspAI	GCGC	2 cut(s)	9, 73
KroI	GCCGGC	1 cut(s)	228
KroNI	GCCGGC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	334
KspAI	GTTAAC	1 cut(s)	484
Kzo9I	GATC	9 cut(s)	48, 208, 334, 436, 469, 581, 679, 838, 1086
LmnI	GCTCC	2 cut(s)	401, 934
Lsp1109I	GCAGC	4 cut(s)	118, 416, 868, 877
LweI	GCATC	1 cut(s)	1237
MaeI	CTAG	4 cut(s)	102, 503, 524, 1172
MaeII	ACGT	2 cut(s)	697, 845
MalI	GATC	9 cut(s)	50, 210, 336, 438, 471, 583, 681, 840, 1088
MboI	GATC	9 cut(s)	48, 208, 334, 436, 469, 581, 679, 838, 1086
MboII	GAAGA	9 cut(s)	296, 313, 316, 632, 728, 734, 909, 1124, 1142
MflI	RGATCY	4 cut(s)	469, 679, 838, 1086
MhlI	GDGCHC	3 cut(s)	166, 616, 697
MluCI	AATT	9 cut(s)	145, 276, 358, 423, 530, 586, 657, 775, 1043
MlyI	GAGTC	2 cut(s)	514, 679
MmeI	TCCRAC	2 cut(s)	85, 945
MroNI	GCCGGC	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	3 cut(s)	483, 702, 1212
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	2 cut(s)	229, 1192
Mva1269I	GAATGC	1 cut(s)	504
MvnI	CGCG	2 cut(s)	75, 172
MwoI	GCNNNNNNNGC	5 cut(s)	120, 161, 287, 463, 646
NaeI	GCCGGC	1 cut(s)	230
NdeII	GATC	9 cut(s)	48, 208, 334, 436, 469, 581, 679, 838, 1086
NgoMIV	GCCGGC	1 cut(s)	228
NlaIII	CATG	5 cut(s)	443, 550, 577, 1070, 1159
NlaIV	GGNNCC	3 cut(s)	471, 840, 1072
NspI	RCATGY	1 cut(s)	550
PceI	AGGCCT	1 cut(s)	199
PctI	GAATGC	1 cut(s)	504
PdiI	GCCGGC	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	90
PkrI	GCNGC	7 cut(s)	13, 130, 133, 154, 406, 858, 892
PleI	GAGTC	2 cut(s)	514, 679
PmaCI	CACGTG	1 cut(s)	698
PmlI	CACGTG	1 cut(s)	698
PpsI	GAGTC	2 cut(s)	514, 679
Ppu21I	YACGTR	1 cut(s)	698
PpuMI	RGGWCCY	1 cut(s)	34
PsiI	TTATAA	1 cut(s)	782
Psp5II	RGGWCCY	1 cut(s)	34
PspCI	CACGTG	1 cut(s)	698
PspFI	CCCAGC	1 cut(s)	473
PspN4I	GGNNCC	3 cut(s)	471, 840, 1072
PspPI	GGNCC	3 cut(s)	34, 137, 1070
PspPPI	RGGWCCY	1 cut(s)	34
PsuI	RGATCY	4 cut(s)	469, 679, 838, 1086
PvuII	CAGCTG	1 cut(s)	242
SaqAI	TTAA	3 cut(s)	483, 702, 1212
SatI	GCNGC	7 cut(s)	12, 129, 132, 153, 405, 857, 891
Sau3AI	GATC	9 cut(s)	48, 208, 334, 436, 469, 581, 679, 838, 1086
Sau96I	GGNCC	3 cut(s)	34, 137, 1070
SchI	GAGTC	2 cut(s)	514, 679
SduI	GDGCHC	3 cut(s)	166, 616, 697
SfaNI	GCATC	1 cut(s)	1237
SinI	GGWCC	2 cut(s)	34, 137
SmlI	CTYRAG	1 cut(s)	1061
SmoI	CTYRAG	1 cut(s)	1061
Sse9I	AATT	9 cut(s)	145, 276, 358, 423, 530, 586, 657, 775, 1043
SseBI	AGGCCT	1 cut(s)	199
SspMI	CTAG	4 cut(s)	102, 503, 524, 1172
StuI	AGGCCT	1 cut(s)	199
StyI	CCWWGG	3 cut(s)	101, 291, 992
TaiI	ACGT	2 cut(s)	700, 848
TaqI	TCGA	3 cut(s)	51, 94, 184
TasI	AATT	9 cut(s)	145, 276, 358, 423, 530, 586, 657, 775, 1043
TauI	GCSGC	3 cut(s)	14, 131, 155
Tru1I	TTAA	3 cut(s)	483, 702, 1212
Tru9I	TTAA	3 cut(s)	483, 702, 1212
TscAI	CASTG	3 cut(s)	277, 752, 944
TseI	GCWGC	4 cut(s)	131, 404, 856, 890
TspDTI	ATGAA	7 cut(s)	69, 225, 562, 579, 1031, 1125, 1218
TspGWI	ACGGA	4 cut(s)	29, 98, 414, 728
TspRI	CASTG	3 cut(s)	277, 752, 944
VpaK11BI	GGWCC	2 cut(s)	34, 137
XagI	CCTNNNNNAGG	1 cut(s)	41
XapI	RAATTY	3 cut(s)	423, 530, 586
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	1 cut(s)	550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	826
XmaJI	CCTAGG	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	4 cut(s)	102, 503, 524, 1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.