Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007408

Physical Location & Seq

Genomic Coordinates Forward (+)

37160804 .. 37166103

Gene Structure 5300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g37250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCTAGGGCAACTTTTGGGGACTCTAGAGAAATTCAGGAAAGAAGACATGCAACTTTCAGCGACAGAGGGATTCATGCGGAGATCAAATTCTTTACAGAGAGCTGAGCAAAGAGCACGAGAAGAAAGTGAAAGACTTAGGCAACAAGAGCGTGAACAAATTGCGGAAAAGCGGAGGAGAGATCTGACTCTTCGGGCACGTGTTAATGCCAAGACGGAAGAAAAGAAATTGGAACTTCTTTTTCTTCAGTGGAGTGAGCATAATAAAAGACTTGGGAATTTTATAAGGACTAAAACAGAGCCTCCAATATATTATCTGCCCAAGAAACCATTAGAAGAGGATGCTGTGCTAGCTGAGCAGCAAAAAGAAAAGGAGTTTCTAGCGTGGAAAGCTGCACGAAGGGAAGAACTGACCGAATATCAGAAGCAAATTGGGGAGCAGTATATTGCCAATGTTGAAAAGGAGTTAGAGAGGTGGCAAAATGCAAGGACACCAAGGAAAGCGAACAATGATGTGATGAACTTACAGGAAACAATGGACAAAGAATTAGACACGCACAGGCTTGAGCATGGTCCCAAGAAAAGAAAGATCGCTGATGGAAGCAACAATGAAGATGAGGATGATGTGGAAGATATTAATGTAGCAGAGGACTACATGATTGATGATGTGCTCGACGTTGATGATAACAGTCGAAGGGGTGATGAAATAGCTAAACCGGACGCAGGTAATACTACTCCAAACGCAGATACAGTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

Pinin_SDK_memA

Protein Analysis

253

Amino Acids

29.7

Weight (kDa)

5.17

Isoelectric Point (pI)

56.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pinin_SDK_memA	PF04696	1 - 123	9.2e-25	pinin/SDK/memA/ protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15200 AT1G15200 AT1G15200 AT1G15200
fragaria_vesca	FvH4_5g29810 FvH4_5g29810 FvH4_5g29810 FvH4_5g29810 FvH4_5g29810 FvH4_5g29810
malus_domestica	MD08G1227300.v1.1 MD15G1419700.v1.1
prunus_persica	Prupe.1G564400_v2.0.a1
pyrus_communis	pycom08g19830 pycom15g37250
rosa_chinensis	RchiOBHm_Chr7g0223331
rosa_laevigata	RLG00000001987
rosa_multiflora	Rmu_sc0005124.1_g000020
rosa_roxburghii	Rroxscaffold_3G00235910
rosa_rugosa	Rorug07G0216100
rosa_samantha	Rh7AG359800 Rh7BG349700 Rh7CG378200 Rh7DG355100
rosa_wichuraiana	Rw7G030580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	713
AciI	CCGC	3 cut(s)	79, 164, 172
AcsI	RAATTY	3 cut(s)	32, 88, 277
AcuI	CTGAAG	1 cut(s)	230
AcvI	CACGTG	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	722
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	1 cut(s)	458
AluBI	AGCT	4 cut(s)	104, 353, 392, 710
AluI	AGCT	4 cut(s)	104, 353, 392, 710
Alw21I	GWGCWC	2 cut(s)	118, 672
ApeKI	GCWGC	2 cut(s)	358, 392
ApoI	RAATTY	3 cut(s)	32, 88, 277
AseI	ATTAAT	1 cut(s)	636
AspS9I	GGNCC	1 cut(s)	572
AsuHPI	GGTGA	1 cut(s)	710
AsuNHI	GCTAGC	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	572
BaeGI	GKGCMC	1 cut(s)	199
BauI	CACGAG	1 cut(s)	117
BbrPI	CACGTG	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	2 cut(s)	118, 672
BbvI	GCAGC	2 cut(s)	370, 379
BccI	CCATC	1 cut(s)	590
BfaI	CTAG	4 cut(s)	5, 26, 350, 380
BfuAI	ACCTGC	1 cut(s)	713
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	2 cut(s)	359, 393
BlpI	GCTNAGC	2 cut(s)	105, 354
BlsI	GCNGC	2 cut(s)	360, 394
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	1 cut(s)	574
BmsI	GCATC	1 cut(s)	331
BmtI	GCTAGC	1 cut(s)	353
BpiI	GAAGAC	1 cut(s)	51
Bpu1102I	GCTNAGC	2 cut(s)	105, 354
BpuEI	CTTGAG	1 cut(s)	584
BsaAI	YACGTR	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	494
BsaWI	WCCGGW	1 cut(s)	715
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	722
BseDI	CCNNGG	1 cut(s)	494
BseGI	GGATG	2 cut(s)	346, 625
BseLI	CCNNNNNNNGG	1 cut(s)	722
BseMII	CTCAG	2 cut(s)	96, 345
BseRI	GAGGAG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	2 cut(s)	370, 379
BsgI	GTGCAG	1 cut(s)	378
BsiHKAI	GWGCWC	2 cut(s)	118, 672
BsiSI	CCGG	1 cut(s)	716
BslFI	GGGAC	2 cut(s)	34, 558
BslI	CCNNNNNNNGG	1 cut(s)	722
BsmFI	GGGAC	2 cut(s)	34, 558
Bsp1286I	GDGCHC	3 cut(s)	118, 199, 672
Bsp143I	GATC	3 cut(s)	83, 181, 588
Bsp1720I	GCTNAGC	2 cut(s)	105, 354
BspACI	CCGC	3 cut(s)	79, 164, 172
BspCNI	CTCAG	2 cut(s)	97, 346
BspLI	GGNNCC	1 cut(s)	574
BspMI	ACCTGC	1 cut(s)	713
BspOI	GCTAGC	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	494
BssMI	GATC	3 cut(s)	83, 181, 588
BssSI	CACGAG	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	494
Bst2BI	CACGAG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	689, 751
Bst6I	CTCTTC	2 cut(s)	195, 330
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	3 cut(s)	105, 137, 354
BstF5I	GGATG	2 cut(s)	346, 625
BstKTI	GATC	3 cut(s)	86, 184, 591
BstMBI	GATC	3 cut(s)	83, 181, 588
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 350, 355, 389
BstNSI	RCATGY	1 cut(s)	52
BstSLI	GKGCMC	1 cut(s)	199
BstV1I	GCAGC	2 cut(s)	370, 379
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	346, 625
BtsIMutI	CAGTG	1 cut(s)	254
BveI	ACCTGC	1 cut(s)	713
Cac8I	GCNNGC	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	572
CseI	GACGC	1 cut(s)	728
CviAII	CATG	4 cut(s)	49, 76, 569, 655
CviJI	RGCY	6 cut(s)	104, 301, 353, 392, 562, 710
CviKI_1	RGCY	6 cut(s)	104, 301, 353, 392, 562, 710
DdeI	CTNAG	3 cut(s)	105, 137, 354
DpnI	GATC	3 cut(s)	85, 183, 590
DpnII	GATC	3 cut(s)	83, 181, 588
Eam1104I	CTCTTC	2 cut(s)	195, 330
EarI	CTCTTC	2 cut(s)	195, 330
Eco130I	CCWWGG	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	572
Eco57I	CTGAAG	1 cut(s)	230
Eco72I	CACGTG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	494
FaeI	CATG	4 cut(s)	52, 79, 572, 658
FaiI	YATR	8 cut(s)	50, 77, 261, 284, 310, 444, 570, 656
FaqI	GGGAC	2 cut(s)	34, 558
FatI	CATG	4 cut(s)	48, 75, 568, 654
Fnu4HI	GCNGC	2 cut(s)	359, 393
FokI	GGATG	2 cut(s)	353, 632
Fsp4HI	GCNGC	2 cut(s)	359, 393
FspBI	CTAG	4 cut(s)	5, 26, 350, 380
GluI	GCNGC	2 cut(s)	359, 393
HapII	CCGG	1 cut(s)	716
HgaI	GACGC	1 cut(s)	728
Hin1II	CATG	4 cut(s)	52, 79, 572, 658
HinfI	GANTC	3 cut(s)	22, 72, 187
HpaII	CCGG	1 cut(s)	716
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	2 cut(s)	186, 423
Hpy188III	TCNNGA	2 cut(s)	26, 37
Hpy8I	GTNNAC	1 cut(s)	155
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	2 cut(s)	393, 687
HpyCH4III	ACNGT	2 cut(s)	689, 751
HpyCH4IV	ACGT	2 cut(s)	199, 675
HpyCH4V	TGCA	3 cut(s)	52, 395, 485
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 350, 355, 389
HpyF3I	CTNAG	3 cut(s)	105, 137, 354
HpySE526I	ACGT	2 cut(s)	199, 675
Hsp92II	CATG	4 cut(s)	52, 79, 572, 658
Kzo9I	GATC	3 cut(s)	83, 181, 588
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	5 cut(s)	22, 512, 544, 708, 729
Lsp1109I	GCAGC	2 cut(s)	370, 379
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	4 cut(s)	5, 26, 350, 380
MaeII	ACGT	2 cut(s)	199, 675
MalI	GATC	3 cut(s)	85, 183, 590
MboI	GATC	3 cut(s)	83, 181, 588
MboII	GAAGA	9 cut(s)	56, 134, 182, 230, 236, 347, 416, 623, 641
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	3 cut(s)	118, 199, 672
MluCI	AATT	7 cut(s)	32, 88, 159, 227, 277, 429, 545
MlyI	GAGTC	2 cut(s)	16, 181
MnlI	CCTC	7 cut(s)	61, 168, 312, 331, 465, 610, 640
MseI	TTAA	2 cut(s)	204, 636
MspI	CCGG	1 cut(s)	716
MwoI	GCNNNNNNNGC	4 cut(s)	148, 350, 355, 389
NdeII	GATC	3 cut(s)	83, 181, 588
NheI	GCTAGC	1 cut(s)	349
NlaIII	CATG	4 cut(s)	52, 79, 572, 658
NlaIV	GGNNCC	1 cut(s)	574
NspI	RCATGY	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	360, 394
PleI	GAGTC	2 cut(s)	16, 181
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
PpsI	GAGTC	2 cut(s)	16, 181
Ppu21I	YACGTR	1 cut(s)	200
PshBI	ATTAAT	1 cut(s)	636
PsiI	TTATAA	1 cut(s)	284
PspCI	CACGTG	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	574
PspPI	GGNCC	1 cut(s)	572
PsuI	RGATCY	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	204, 636
SatI	GCNGC	2 cut(s)	359, 393
Sau3AI	GATC	3 cut(s)	83, 181, 588
Sau96I	GGNCC	1 cut(s)	572
SchI	GAGTC	2 cut(s)	16, 181
SduI	GDGCHC	3 cut(s)	118, 199, 672
SetI	ASST	8 cut(s)	106, 202, 355, 394, 476, 678, 712, 727
SfaNI	GCATC	1 cut(s)	331
SinI	GGWCC	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	7 cut(s)	32, 88, 159, 227, 277, 429, 545
SsiI	CCGC	3 cut(s)	79, 164, 172
SspMI	CTAG	4 cut(s)	5, 26, 350, 380
StyI	CCWWGG	1 cut(s)	494
TaaI	ACNGT	2 cut(s)	689, 751
TaiI	ACGT	2 cut(s)	202, 678
TaqI	TCGA	2 cut(s)	672, 691
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	7 cut(s)	32, 88, 159, 227, 277, 429, 545
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	204, 636
Tru9I	TTAA	2 cut(s)	204, 636
TscAI	CASTG	1 cut(s)	254
TseI	GCWGC	2 cut(s)	358, 392
TspDTI	ATGAA	4 cut(s)	64, 533, 624, 717
TspGWI	ACGGA	1 cut(s)	230
TspRI	CASTG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	572
VspI	ATTAAT	1 cut(s)	636
XapI	RAATTY	3 cut(s)	32, 88, 277
XbaI	TCTAGA	1 cut(s)	25
XceI	RCATGY	1 cut(s)	52
XspI	CTAG	4 cut(s)	5, 26, 350, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.