Rorug07G0216100

pinin/SDK/memA/ protein conserved region

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
19191961 .. 19197346
5386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0216100.1

Sequence Viewer

Length: 975 bp
ATGTCCACCGCCGCCCTCCCCACCAAACCCCGCCGGGTCCCACCCCCCTGCTGGACCCAGGACGAGGCCCGCTCCCTCATCCTCGCCTACCGCGACCGCTGGTTCGCTCTCCGCCGCGCCAATCTCAAATCCGCCGACTGGGACCACGTCGCAGCCGCCACCGCCGCCGCGGCTCCCTCCTCCCCGCCCAAGACCGCGCTGCAGTGCCGGCATAAGATGGAGAAGCTTCGCAAGCGGTACCGCGCTGAGAAGCAGCGGGCTTCTGGGTACCCGGGTCGGTTTTCCTCGTCGTGGGCTTTGTTTCATCTCATGGATGAAATGGAGTCCGGCCCGGATCGGGGATTGGATAGTGGTGGTGAGTTTGGAGGTGGGTTTTCGTTAAAGGCTCGTAATTTGGTGAAATTTGATGGAAATGTTGGTAGGGATTTTAGTCCTGATGTTGATGAGAATTCTAGCTTTTATTCTGAAGGTGATGATTATGTTAATCAAGGGTTTAGGCCAAAGAGTAATGGCAAGGCTGATGTGAATCTTAAGCACAGTTTCAGGAAACATGGGGACTATGGAGTTGATATTAGAAGTGATAGGGATTTTGTGCCTGCCGGTTTTCGGCCAAAGAGTAGTGGCATTGTTGATGGGAATGTAAAGAGCAATGTGCATTTTAAGGAGTTTGATGGGTATTCTTGTTTATCAGGATCAAAGTTTGTGAAGAAGAGTGGTGTTGTTGGGATTAAGAGAGATGTGGATCCTGTTGAAGACTTGGCTTCATCGATTATGCGGTTGGGAGAAGGGTTTGTGAGGATGGAGAAAATGAAGATGGAAATGACGATGGAGATTGAGAGGATGCGAATGGAGATGGAGCTGAAGCGTAATGAGGCCATGATCGAATCCCACCAGCAGATTGTGGATGCTTTTGTGAATGCATTATTGGAAAGGAAGAAGAAAAAGAAGGCCAAGGTGGAGTCTTCCCATGCTTAG

Protein Analysis

324

Amino Acids

36.48

Weight (kDa)

9.5

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 16 - 107 2.2e-16 Myb/SANT-like DNA-binding domain
MADF_DNA_bdg PF10545 38 - 104 2.9e-06 Alcohol dehydrogenase transcription factor Myb/SANT-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 237, 267
AccB1I GGYRCC 2 cut(s) 237, 267
AccBSI CCGCTC 1 cut(s) 72
AccII CGCG 5 cut(s) 93, 117, 170, 197, 243
AclWI GGATC 4 cut(s) 342, 700, 737, 750
AcoI YGGCCR 1 cut(s) 608
AcsI RAATTY 2 cut(s) 401, 448
AcuI CTGAAG 2 cut(s) 486, 881
AfaI GTAC 2 cut(s) 239, 269
AfiI CCNNNNNNNGG 7 cut(s) 51, 64, 138, 291, 337, 338, 606
AflII CTTAAG 1 cut(s) 530
AgsI TTSAA 1 cut(s) 752
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 1 cut(s) 57
AjuI GAANNNNNNNTTGG 2 cut(s) 908, 940
AluBI AGCT 3 cut(s) 226, 456, 859
AluI AGCT 3 cut(s) 226, 456, 859
AlwI GGATC 4 cut(s) 342, 700, 737, 750
Ama87I CYCGRG 1 cut(s) 271
AoxI GGCC 6 cut(s) 66, 328, 497, 608, 873, 948
ApeKI GCWGC 3 cut(s) 152, 199, 253
ApoI RAATTY 2 cut(s) 401, 448
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp718I GGTACC 2 cut(s) 237, 267
AspLEI GCGC 3 cut(s) 119, 199, 245
AspS9I GGNCC 5 cut(s) 37, 54, 67, 142, 329
AsuC2I CCSGG 4 cut(s) 35, 272, 273, 332
AsuHPI GGTGA 3 cut(s) 368, 409, 482
AvaI CYCGRG 1 cut(s) 271
AvaII GGWCC 3 cut(s) 37, 54, 142
BaeI ACNNNNGTAYC 2 cut(s) 259, 292
BamHI GGATCC 1 cut(s) 742
BanI GGYRCC 2 cut(s) 237, 267
BbsI GAAGAC 2 cut(s) 759, 954
BbvI GCAGC 3 cut(s) 164, 186, 265
BccI CCATC 8 cut(s) 211, 401, 626, 665, 793, 808, 820, 847
BciT130I CCWGG 1 cut(s) 59
BcnI CCSGG 4 cut(s) 35, 272, 273, 332
BfaI CTAG 1 cut(s) 453
BfmI CTRYAG 1 cut(s) 200
BfrI CTTAAG 1 cut(s) 530
BglI GCCNNNNNGGC 1 cut(s) 170
BisI GCNGC 9 cut(s) 12, 115, 153, 156, 165, 168, 171, 200, 254
BlsI GCNGC 9 cut(s) 13, 116, 154, 157, 166, 169, 172, 201, 255
Bme1390I CCNGG 5 cut(s) 35, 59, 272, 273, 332
Bme18I GGWCC 3 cut(s) 37, 54, 142
BmeT110I CYCGRG 1 cut(s) 271
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 5 cut(s) 37, 54, 67, 142, 329
BmiI GGNNCC 8 cut(s) 38, 39, 56, 143, 174, 239, 269, 744
BmrFI CCNGG 5 cut(s) 35, 59, 272, 273, 332
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 2 cut(s) 831, 895
BmuI ACTGGG 1 cut(s) 148
BpiI GAAGAC 2 cut(s) 759, 954
BplI GAGNNNNNCTC 2 cut(s) 56, 88
BpuMI CCSGG 4 cut(s) 35, 272, 273, 332
Bsa29I ATCGAT 1 cut(s) 767
BsaBI GATNNNNATC 2 cut(s) 525, 741
BsaJI CCNNGG 4 cut(s) 57, 168, 271, 951
Bsc4I CCNNNNNNNGG 7 cut(s) 51, 64, 138, 291, 337, 338, 606
Bse118I RCCGGY 2 cut(s) 207, 599
Bse1I ACTGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 655
Bse8I GATNNNNATC 2 cut(s) 525, 741
BseBI CCWGG 1 cut(s) 59
BseCI ATCGAT 1 cut(s) 767
BseDI CCNNGG 4 cut(s) 57, 168, 271, 951
BseGI GGATG 5 cut(s) 78, 319, 804, 846, 910
BseJI GATNNNNATC 2 cut(s) 525, 741
BseLI CCNNNNNNNGG 7 cut(s) 51, 64, 138, 291, 337, 338, 606
BseMI GCAATG 1 cut(s) 655
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 3 cut(s) 164, 186, 265
Bsh1236I CGCG 5 cut(s) 93, 117, 170, 197, 243
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 6 cut(s) 68, 330, 499, 610, 875, 950
BshNI GGYRCC 2 cut(s) 237, 267
BshVI ATCGAT 1 cut(s) 767
BsiEI CGRYCG 1 cut(s) 97
BsiHKCI CYCGRG 1 cut(s) 271
BsiSI CCGG 6 cut(s) 34, 208, 272, 327, 332, 600
BslFI GGGAC 3 cut(s) 23, 155, 569
BslI CCNNNNNNNGG 7 cut(s) 51, 64, 138, 291, 337, 338, 606
BsmFI GGGAC 3 cut(s) 23, 155, 569
BsmI GAATGC 1 cut(s) 922
BsnI GGCC 6 cut(s) 68, 330, 499, 610, 875, 950
BsoBI CYCGRG 1 cut(s) 271
Bsp143I GATC 4 cut(s) 334, 692, 742, 879
BspANI GGCC 6 cut(s) 68, 330, 499, 610, 875, 950
BspCNI CTCAG 1 cut(s) 238
BspDI ATCGAT 1 cut(s) 767
BspFNI CGCG 5 cut(s) 93, 117, 170, 197, 243
BspLI GGNNCC 8 cut(s) 38, 39, 56, 143, 174, 239, 269, 744
BspMAI CTGCAG 1 cut(s) 204
BspPI GGATC 4 cut(s) 342, 700, 737, 750
BspT107I GGYRCC 2 cut(s) 237, 267
BspTI CTTAAG 1 cut(s) 530
BsrBI CCGCTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 655
BsrFI RCCGGY 2 cut(s) 207, 599
BsrI ACTGG 1 cut(s) 143
BssAI RCCGGY 2 cut(s) 207, 599
BssECI CCNNGG 4 cut(s) 57, 168, 271, 951
BssMI GATC 4 cut(s) 334, 692, 742, 879
BssT1I CCWWGG 1 cut(s) 951
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 539
Bst6I CTCTTC 1 cut(s) 704
BstAFI CTTAAG 1 cut(s) 530
BstC8I GCNNGC 5 cut(s) 70, 209, 233, 258, 597
BstDEI CTNAG 2 cut(s) 246, 972
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 5 cut(s) 78, 319, 804, 846, 910
BstFNI CGCG 5 cut(s) 93, 117, 170, 197, 243
BstHHI GCGC 3 cut(s) 119, 199, 245
BstKTI GATC 4 cut(s) 337, 695, 745, 882
BstMBI GATC 4 cut(s) 334, 692, 742, 879
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 5 cut(s) 161, 164, 170, 208, 232
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 5 cut(s) 33, 57, 270, 271, 330
BstSFI CTRYAG 1 cut(s) 200
BstUI CGCG 5 cut(s) 93, 117, 170, 197, 243
BstV1I GCAGC 3 cut(s) 164, 186, 265
BstV2I GAAGAC 2 cut(s) 759, 954
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
Bsu15I ATCGAT 1 cut(s) 767
BsuRI GGCC 6 cut(s) 68, 330, 499, 610, 875, 950
BsuTUI ATCGAT 1 cut(s) 767
BtgI CCRYGG 1 cut(s) 168
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 5 cut(s) 78, 319, 804, 846, 910
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 5 cut(s) 70, 209, 233, 258, 597
CfoI GCGC 3 cut(s) 119, 199, 245
Cfr10I RCCGGY 2 cut(s) 207, 599
Cfr13I GGNCC 5 cut(s) 37, 54, 67, 142, 329
Cfr42I CCGCGG 1 cut(s) 171
Cfr9I CCCGGG 1 cut(s) 271
ClaI ATCGAT 1 cut(s) 767
Csp6I GTAC 2 cut(s) 238, 268
CviAII CATG 4 cut(s) 310, 551, 877, 968
CviQI GTAC 2 cut(s) 238, 268
DdeI CTNAG 2 cut(s) 246, 972
DpnI GATC 4 cut(s) 336, 694, 744, 881
DpnII GATC 4 cut(s) 334, 692, 742, 879
EaeI YGGCCR 1 cut(s) 608
Eam1104I CTCTTC 1 cut(s) 704
EarI CTCTTC 1 cut(s) 704
EciI GGCGGA 2 cut(s) 101, 121
Eco130I CCWWGG 1 cut(s) 951
Eco47I GGWCC 3 cut(s) 37, 54, 142
Eco57I CTGAAG 2 cut(s) 486, 881
Eco88I CYCGRG 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 37
EcoRI GAATTC 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 951
EcoT22I ATGCAT 1 cut(s) 922
ErhI CCWWGG 1 cut(s) 951
FaeI CATG 4 cut(s) 313, 554, 880, 971
FaiI YATR 8 cut(s) 213, 311, 480, 552, 561, 773, 878, 969
FaqI GGGAC 3 cut(s) 23, 155, 569
FatI CATG 4 cut(s) 309, 550, 876, 967
FauI CCCGC 4 cut(s) 38, 77, 192, 249
Fnu4HI GCNGC 9 cut(s) 12, 115, 153, 156, 165, 168, 171, 200, 254
FokI GGATG 5 cut(s) 65, 326, 811, 853, 917
Fsp4HI GCNGC 9 cut(s) 12, 115, 153, 156, 165, 168, 171, 200, 254
FspBI CTAG 1 cut(s) 453
GlaI GCGC 3 cut(s) 118, 198, 244
GluI GCNGC 9 cut(s) 12, 115, 153, 156, 165, 168, 171, 200, 254
HaeIII GGCC 6 cut(s) 68, 330, 499, 610, 875, 950
HapII CCGG 6 cut(s) 34, 208, 272, 327, 332, 600
HhaI GCGC 3 cut(s) 119, 199, 245
Hin1II CATG 4 cut(s) 313, 554, 880, 971
Hin6I GCGC 3 cut(s) 117, 197, 243
HinP1I GCGC 3 cut(s) 117, 197, 243
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 4 cut(s) 323, 526, 884, 959
HpaII CCGG 6 cut(s) 34, 208, 272, 327, 332, 600
HphI GGTGA 3 cut(s) 368, 409, 482
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 466
Hpy188III TCNNGA 3 cut(s) 434, 544, 690
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 2 cut(s) 152, 292
HpyAV CCTTC 3 cut(s) 461, 779, 940
HpyCH4III ACNGT 1 cut(s) 539
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 202, 655, 920
HpyF10VI GCNNNNNNNGC 5 cut(s) 161, 164, 170, 208, 232
HpyF3I CTNAG 2 cut(s) 246, 972
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 4 cut(s) 313, 554, 880, 971
HspAI GCGC 3 cut(s) 117, 197, 243
KflI GGGWCCC 1 cut(s) 37
KpnI GGTACC 2 cut(s) 241, 271
KroI GCCGGC 1 cut(s) 207
KroNI GCCGGC 1 cut(s) 209
KspI CCGCGG 1 cut(s) 171
Kzo9I GATC 4 cut(s) 334, 692, 742, 879
LmnI GCTCC 3 cut(s) 77, 178, 856
Lsp1109I GCAGC 3 cut(s) 164, 186, 265
LweI GCATC 2 cut(s) 831, 895
MaeI CTAG 1 cut(s) 453
MaeII ACGT 1 cut(s) 147
MalI GATC 4 cut(s) 336, 694, 744, 881
MbiI CCGCTC 1 cut(s) 72
MboI GATC 4 cut(s) 334, 692, 742, 879
MboII GAAGA 7 cut(s) 718, 721, 764, 823, 946, 949, 954
MflI RGATCY 1 cut(s) 742
MluCI AATT 3 cut(s) 391, 401, 448
MlyI GAGTC 2 cut(s) 332, 968
Mph1103I ATGCAT 1 cut(s) 922
MroNI GCCGGC 1 cut(s) 207
MseI TTAA 5 cut(s) 380, 483, 531, 660, 729
MspA1I CMGCKG 3 cut(s) 99, 170, 256
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 6 cut(s) 34, 208, 272, 327, 332, 600
MspR9I CCNGG 5 cut(s) 35, 59, 272, 273, 332
Mva1269I GAATGC 1 cut(s) 922
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 5 cut(s) 93, 117, 170, 197, 243
MwoI GCNNNNNNNGC 5 cut(s) 161, 164, 170, 208, 232
NaeI GCCGGC 1 cut(s) 209
NciI CCSGG 4 cut(s) 35, 272, 273, 332
NdeII GATC 4 cut(s) 334, 692, 742, 879
NgoMIV GCCGGC 1 cut(s) 207
NlaIII CATG 4 cut(s) 313, 554, 880, 971
NlaIV GGNNCC 8 cut(s) 38, 39, 56, 143, 174, 239, 269, 744
NsiI ATGCAT 1 cut(s) 922
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 1 cut(s) 922
PdiI GCCGGC 1 cut(s) 209
PfeI GAWTC 2 cut(s) 526, 884
PflFI GACNNNGTC 1 cut(s) 146
PkrI GCNGC 9 cut(s) 13, 116, 154, 157, 166, 169, 172, 201, 255
PleI GAGTC 2 cut(s) 331, 967
PpsI GAGTC 2 cut(s) 331, 967
PpuMI RGGWCCY 1 cut(s) 37
Psp5II RGGWCCY 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 8 cut(s) 38, 39, 56, 143, 174, 239, 269, 744
PspPI GGNCC 5 cut(s) 37, 54, 67, 142, 329
PspPPI RGGWCCY 1 cut(s) 37
PstI CTGCAG 1 cut(s) 204
PsuI RGATCY 1 cut(s) 742
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 2 cut(s) 239, 269
RsaNI GTAC 2 cut(s) 238, 268
SacII CCGCGG 1 cut(s) 171
SaqAI TTAA 5 cut(s) 380, 483, 531, 660, 729
SatI GCNGC 9 cut(s) 12, 115, 153, 156, 165, 168, 171, 200, 254
Sau3AI GATC 4 cut(s) 334, 692, 742, 879
Sau96I GGNCC 5 cut(s) 37, 54, 67, 142, 329
SchI GAGTC 2 cut(s) 332, 968
ScrFI CCNGG 5 cut(s) 35, 59, 272, 273, 332
SetI ASST 7 cut(s) 150, 228, 370, 458, 472, 861, 957
SfaNI GCATC 2 cut(s) 831, 895
SfcI CTRYAG 1 cut(s) 200
Sfr303I CCGCGG 1 cut(s) 171
SgrBI CCGCGG 1 cut(s) 171
SinI GGWCC 3 cut(s) 37, 54, 142
SmaI CCCGGG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 3 cut(s) 391, 401, 448
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 5 cut(s) 33, 57, 270, 271, 330
StyI CCWWGG 1 cut(s) 951
TaaI ACNGT 1 cut(s) 539
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 767, 882
TasI AATT 3 cut(s) 391, 401, 448
TauI GCSGC 6 cut(s) 14, 117, 158, 167, 170, 173
TfiI GAWTC 2 cut(s) 526, 884
Tru1I TTAA 5 cut(s) 380, 483, 531, 660, 729
Tru9I TTAA 5 cut(s) 380, 483, 531, 660, 729
TscAI CASTG 1 cut(s) 209
TseI GCWGC 3 cut(s) 152, 199, 253
TspDTI ATGAA 4 cut(s) 293, 330, 753, 824
TspMI CCCGGG 1 cut(s) 271
TspRI CASTG 1 cut(s) 209
Tth111I GACNNNGTC 1 cut(s) 146
Vha464I CTTAAG 1 cut(s) 530
VpaK11BI GGWCC 3 cut(s) 37, 54, 142
XapI RAATTY 2 cut(s) 401, 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 48
XmaI CCCGGG 1 cut(s) 271
XspI CTAG 1 cut(s) 453
Zsp2I ATGCAT 1 cut(s) 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.