Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007408

Physical Location & Seq

Genomic Coordinates Forward (+)

19787767 .. 19792169

Gene Structure 4403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g19830.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGGAAGCGCCGCAGTTGAGAAAACGCAGGAGGAGCTCCGTAAGGAGATCGATGAACTCCAACGCCAACAGCGCGAGATTACGGAACGGCTTCGAGACCCTAGGGGACTCCGGAAGGGAGGCTTGGTAGCCGCTAGTCCTCGCAATTTTGCAGCCAATGGTGCTGGCGTTCGTCCGCGTGCATTTACTCGACCTGCAGATAGAGCTGATGCAGAGGATCAACGTCCTGCAAAACGCCGGCTTTCATCAGCGGTTGTCAAGGTTGAGGATGGAGAAATCACTGAAACTGCTGAAGAGGCCAAGGATGTGAAGATGAATGATTCAGCTGTAGAAGCTACGGCTGATCAGAGTGATAGGAAGTTGGCAAATTCCCAACAAAGTGGCTGGTCAAGGAGGGAAGGAAATCACGGAGTAGCAAAGAAGGATTTTGAAATTCCAGCAGCAGATCATGTTCCGAGAGTATTGCCAAAAGAACAAGACCCCAGCTTGGTTAATAGGAACAAAAGAATGCTAGGACAACTTTTGGGGACTCTAGAGAAATTCAGGAAAGAGGACTTGCAACTTTCAGGGACAGAGGCATTCATGCGGAGATCAGATTCTTTACAGAGAGCTGAACAAAGAGCACGAGAAGAAAGTGAAAGACTTAGGCTACAAGAGCGTGAACAAATTGCGGAAAAGCGGAGGAGAGATCTGACTCTTCGGGCACGCGTTAATGCCAAGACGGAAGAAAAGAAATTGGAACTTCTTTTTCTTCAGTGGAGTGAGCATAATAAAAGACTTGGGAATTTTATAAGGACTAAAGCAGAGCCTCCAATATATTATCTGCCCAAGAAACCATTGGAAGAGGATGCTGCGCTAGCTGAACAGCGAAAAGAAAAGGAGTTTCTAGCATGGAAAGCTGCACGAAGAGAGGAACTGACCGAGTATCAGAAGCAGATTGGGGAGCAGTATATTGCCAATGTTGAAAAGGAGTTAGAAAGGTGGCAAAATGCAAGGAAACCAAGGAAAGCGAACAACGATGTGATGAACTTACAGGAAACAATGGACAAAGAATTAGACACACACAGGCTTGAGCATGGTCCCAAGAAAAGAAACATCCCTGATGGAAGCAACAACGAAGATGAGGATGATGTGGAAGATATTAACGTAGCAGAGGACTACATGATTGATGATGTGCTTGACGTTGATGATAACAATCGAAGGGGCGATGCAATAGCTAAACCGGATGCAGGTAATACCAGTCCAAACGCAGATACTGTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

Pinin_SDK_memA

Protein Analysis

422

Amino Acids

48.4

Weight (kDa)

5.78

Isoelectric Point (pI)

60.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15200 AT1G15200 AT1G15200 AT1G15200
fragaria_vesca	FvH4_5g29810 FvH4_5g29810 FvH4_5g29810 FvH4_5g29810 FvH4_5g29810 FvH4_5g29810
malus_domestica	MD08G1227300.v1.1 MD15G1419700.v1.1
prunus_persica	Prupe.1G564400_v2.0.a1
pyrus_communis	pycom08g19830 pycom15g37250
rosa_chinensis	RchiOBHm_Chr7g0223331
rosa_laevigata	RLG00000001987
rosa_multiflora	Rmu_sc0005124.1_g000020
rosa_roxburghii	Rroxscaffold_3G00235910
rosa_rugosa	Rorug07G0216100
rosa_samantha	Rh7AG359800 Rh7BG349700 Rh7CG378200 Rh7DG355100
rosa_wichuraiana	Rw7G030580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	791
Acc36I	ACCTGC	2 cut(s)	202, 1220
AccII	CGCG	3 cut(s)	75, 178, 708
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	7 cut(s)	12, 132, 176, 251, 586, 671, 679
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	4 cut(s)	367, 432, 539, 784
AcuI	CTGAAG	2 cut(s)	312, 737
AfiI	CCNNNNNNNGG	2 cut(s)	487, 1229
AflIII	ACRYGT	1 cut(s)	706
AgsI	TTSAA	2 cut(s)	431, 965
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	9 cut(s)	37, 206, 326, 335, 486, 611, 860, 899, 1217
AluI	AGCT	9 cut(s)	37, 206, 326, 335, 486, 611, 860, 899, 1217
Alw21I	GWGCWC	2 cut(s)	39, 625
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	225
AlwNI	CAGNNNCTG	1 cut(s)	1256
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	4 cut(s)	152, 440, 851, 899
ApoI	RAATTY	4 cut(s)	367, 432, 539, 784
Asp700I	GAANNNNTTC	1 cut(s)	90
AspA2I	CCTAGG	1 cut(s)	101
AspLEI	GCGC	3 cut(s)	11, 75, 856
AspS9I	GGNCC	1 cut(s)	1079
AsuNHI	GCTAGC	1 cut(s)	856
AvaII	GGWCC	1 cut(s)	1079
AvrII	CCTAGG	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	706
BanII	GRGCYC	1 cut(s)	39
BauI	CACGAG	1 cut(s)	624
Bbv12I	GWGCWC	2 cut(s)	39, 625
BbvI	GCAGC	4 cut(s)	164, 452, 838, 886
BccI	CCATC	2 cut(s)	263, 1097
BceAI	ACGGC	2 cut(s)	104, 354
BcgI	CGANNNNNNTGC	2 cut(s)	445, 479
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	6 cut(s)	102, 135, 512, 533, 857, 887
BfmI	CTRYAG	2 cut(s)	195, 327
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	2 cut(s)	202, 1220
BglII	AGATCT	1 cut(s)	688
BisI	GCNGC	6 cut(s)	12, 132, 153, 441, 852, 900
BlnI	CCTAGG	1 cut(s)	101
BlsI	GCNGC	6 cut(s)	13, 133, 154, 442, 853, 901
Bme18I	GGWCC	1 cut(s)	1079
BmgT120I	GGNCC	1 cut(s)	1079
BmiI	GGNNCC	1 cut(s)	1081
BmsI	GCATC	4 cut(s)	199, 838, 1198, 1216
BmtI	GCTAGC	1 cut(s)	860
BpuEI	CTTGAG	1 cut(s)	1091
Bsa29I	ATCGAT	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	1194
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	101, 300, 1001
BsaWI	WCCGGW	2 cut(s)	111, 1222
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	2 cut(s)	487, 1229
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	1239
Bse8I	GATNNNNATC	1 cut(s)	1194
BseAI	TCCGGA	1 cut(s)	111
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	3 cut(s)	101, 300, 1001
BseGI	GGATG	6 cut(s)	274, 310, 853, 1095, 1132, 1231
BseJI	GATNNNNATC	1 cut(s)	1194
BseLI	CCNNNNNNNGG	2 cut(s)	487, 1229
BseNI	ACTGG	1 cut(s)	1239
BseRI	GAGGAG	2 cut(s)	47, 697
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	4 cut(s)	164, 452, 838, 886
BseYI	CCCAGC	1 cut(s)	482
BsgI	GTGCAG	1 cut(s)	885
Bsh1236I	CGCG	3 cut(s)	75, 178, 708
BshFI	GGCC	1 cut(s)	299
BshVI	ATCGAT	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	39, 625
BsiSI	CCGG	3 cut(s)	112, 238, 1223
BslFI	GGGAC	4 cut(s)	120, 541, 583, 1065
BslI	CCNNNNNNNGG	2 cut(s)	487, 1229
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	4 cut(s)	120, 541, 583, 1065
BsmI	GAATGC	2 cut(s)	513, 578
BsnI	GGCC	1 cut(s)	299
Bso31I	GGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	3 cut(s)	39, 625, 706
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	6 cut(s)	48, 217, 343, 445, 590, 688
BspACI	CCGC	7 cut(s)	12, 132, 176, 251, 586, 671, 679
BspANI	GGCC	1 cut(s)	299
BspDI	ATCGAT	1 cut(s)	51
BspEI	TCCGGA	1 cut(s)	111
BspFNI	CGCG	3 cut(s)	75, 178, 708
BspLI	GGNNCC	1 cut(s)	1081
BspMAI	CTGCAG	1 cut(s)	199
BspMI	ACCTGC	2 cut(s)	202, 1220
BspOI	GCTAGC	1 cut(s)	860
BspPI	GGATC	1 cut(s)	225
BspTNI	GGTCTC	1 cut(s)	90
BsrFI	RCCGGY	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	1239
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	3 cut(s)	101, 300, 1001
BssMI	GATC	6 cut(s)	48, 217, 343, 445, 590, 688
BssSI	CACGAG	1 cut(s)	624
BssT1I	CCWWGG	3 cut(s)	101, 300, 1001
Bst2BI	CACGAG	1 cut(s)	624
Bst4CI	ACNGT	1 cut(s)	1258
Bst6I	CTCTTC	4 cut(s)	288, 702, 837, 901
BstC8I	GCNNGC	5 cut(s)	166, 180, 239, 706, 858
BstDEI	CTNAG	1 cut(s)	644
BstF5I	GGATG	6 cut(s)	274, 310, 853, 1095, 1132, 1231
BstFNI	CGCG	3 cut(s)	75, 178, 708
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	3 cut(s)	11, 75, 856
BstKTI	GATC	6 cut(s)	51, 220, 346, 448, 593, 691
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	6 cut(s)	48, 217, 343, 445, 590, 688
BstMWI	GCNNNNNNNGC	9 cut(s)	34, 72, 161, 203, 296, 332, 655, 857, 896
BstSFI	CTRYAG	2 cut(s)	195, 327
BstSLI	GKGCMC	1 cut(s)	706
BstUI	CGCG	3 cut(s)	75, 178, 708
BstV1I	GCAGC	4 cut(s)	164, 452, 838, 886
BstX2I	RGATCY	1 cut(s)	688
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	688
Bsu15I	ATCGAT	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	299
BsuTUI	ATCGAT	1 cut(s)	51
BtgZI	GCGATG	1 cut(s)	1221
BtsCI	GGATG	6 cut(s)	274, 310, 853, 1095, 1132, 1231
BtsIMutI	CAGTG	2 cut(s)	279, 761
BveI	ACCTGC	2 cut(s)	202, 1220
Cac8I	GCNNGC	5 cut(s)	166, 180, 239, 706, 858
CaiI	CAGNNNCTG	1 cut(s)	1256
CfoI	GCGC	3 cut(s)	11, 75, 856
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	1079
ClaI	ATCGAT	1 cut(s)	51
CviAII	CATG	5 cut(s)	449, 583, 891, 1076, 1162
DdeI	CTNAG	1 cut(s)	644
DpnI	GATC	6 cut(s)	50, 219, 345, 447, 592, 690
DpnII	GATC	6 cut(s)	48, 217, 343, 445, 590, 688
Eam1104I	CTCTTC	4 cut(s)	288, 702, 837, 901
EarI	CTCTTC	4 cut(s)	288, 702, 837, 901
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	3 cut(s)	101, 300, 1001
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	1079
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	2 cut(s)	312, 737
EcoICRI	GAGCTC	1 cut(s)	37
EcoT14I	CCWWGG	3 cut(s)	101, 300, 1001
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	3 cut(s)	101, 300, 1001
FaeI	CATG	5 cut(s)	452, 586, 894, 1079, 1165
FaiI	YATR	9 cut(s)	450, 584, 768, 791, 817, 892, 951, 1077, 1163
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	4 cut(s)	120, 541, 583, 1065
FatI	CATG	5 cut(s)	448, 582, 890, 1075, 1161
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	6 cut(s)	12, 132, 153, 441, 852, 900
FokI	GGATG	6 cut(s)	281, 317, 860, 1082, 1139, 1238
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	6 cut(s)	12, 132, 153, 441, 852, 900
FspBI	CTAG	6 cut(s)	102, 135, 512, 533, 857, 887
GlaI	GCGC	3 cut(s)	10, 74, 855
GluI	GCNGC	6 cut(s)	12, 132, 153, 441, 852, 900
GsaI	CCCAGC	1 cut(s)	486
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	3 cut(s)	112, 238, 1223
HhaI	GCGC	3 cut(s)	11, 75, 856
Hin1II	CATG	5 cut(s)	452, 586, 894, 1079, 1165
Hin6I	GCGC	3 cut(s)	9, 73, 854
HinP1I	GCGC	3 cut(s)	9, 73, 854
HinfI	GANTC	5 cut(s)	108, 320, 529, 596, 694
HpaII	CCGG	3 cut(s)	112, 238, 1223
Hpy166II	GTNNAC	1 cut(s)	662
Hpy188I	TCNGA	5 cut(s)	348, 456, 595, 693, 930
Hpy188III	TCNNGA	4 cut(s)	95, 112, 533, 544
Hpy8I	GTNNAC	1 cut(s)	662
HpyAV	CCTTC	4 cut(s)	109, 392, 415, 1194
HpyCH4III	ACNGT	1 cut(s)	1258
HpyCH4IV	ACGT	3 cut(s)	223, 1146, 1182
HpyF10VI	GCNNNNNNNGC	9 cut(s)	34, 72, 161, 203, 296, 332, 655, 857, 896
HpyF3I	CTNAG	1 cut(s)	644
HpySE526I	ACGT	3 cut(s)	223, 1146, 1182
Hsp92II	CATG	5 cut(s)	452, 586, 894, 1079, 1165
HspAI	GCGC	3 cut(s)	9, 73, 854
Kpn2I	TCCGGA	1 cut(s)	111
KroI	GCCGGC	1 cut(s)	237
KroNI	GCCGGC	1 cut(s)	239
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	6 cut(s)	48, 217, 343, 445, 590, 688
LmnI	GCTCC	3 cut(s)	34, 42, 943
Lsp1109I	GCAGC	4 cut(s)	164, 452, 838, 886
LweI	GCATC	4 cut(s)	199, 838, 1198, 1216
MaeI	CTAG	6 cut(s)	102, 135, 512, 533, 857, 887
MaeII	ACGT	3 cut(s)	223, 1146, 1182
MalI	GATC	6 cut(s)	50, 219, 345, 447, 592, 690
MboI	GATC	6 cut(s)	48, 217, 343, 445, 590, 688
MflI	RGATCY	1 cut(s)	688
MhlI	GDGCHC	3 cut(s)	39, 625, 706
MluCI	AATT	8 cut(s)	145, 367, 432, 539, 666, 734, 784, 1052
MluI	ACGCGT	1 cut(s)	706
MlyI	GAGTC	3 cut(s)	102, 523, 688
MmeI	TCCRAC	1 cut(s)	85
MroI	TCCGGA	1 cut(s)	111
MroNI	GCCGGC	1 cut(s)	237
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	3 cut(s)	492, 711, 1143
MspA1I	CMGCKG	2 cut(s)	251, 326
MspI	CCGG	3 cut(s)	112, 238, 1223
Mva1269I	GAATGC	2 cut(s)	513, 578
MvnI	CGCG	3 cut(s)	75, 178, 708
MwoI	GCNNNNNNNGC	9 cut(s)	34, 72, 161, 203, 296, 332, 655, 857, 896
NaeI	GCCGGC	1 cut(s)	239
NdeII	GATC	6 cut(s)	48, 217, 343, 445, 590, 688
NgoMIV	GCCGGC	1 cut(s)	237
NheI	GCTAGC	1 cut(s)	856
NlaIII	CATG	5 cut(s)	452, 586, 894, 1079, 1165
NlaIV	GGNNCC	1 cut(s)	1081
PctI	GAATGC	2 cut(s)	513, 578
PdiI	GCCGGC	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	320, 596
PkrI	GCNGC	6 cut(s)	13, 133, 154, 442, 853, 901
PleI	GAGTC	3 cut(s)	102, 523, 688
PpsI	GAGTC	3 cut(s)	102, 523, 688
PsiI	TTATAA	1 cut(s)	791
Psp124BI	GAGCTC	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	482
PspN4I	GGNNCC	1 cut(s)	1081
PspPI	GGNCC	1 cut(s)	1079
PstI	CTGCAG	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	1256
PsuI	RGATCY	1 cut(s)	688
PvuII	CAGCTG	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	492, 711, 1143
SatI	GCNGC	6 cut(s)	12, 132, 153, 441, 852, 900
Sau3AI	GATC	6 cut(s)	48, 217, 343, 445, 590, 688
Sau96I	GGNCC	1 cut(s)	1079
SchI	GAGTC	3 cut(s)	102, 523, 688
SduI	GDGCHC	3 cut(s)	39, 625, 706
SfaNI	GCATC	4 cut(s)	199, 838, 1198, 1216
SfcI	CTRYAG	2 cut(s)	195, 327
SinI	GGWCC	1 cut(s)	1079
SmlI	CTYRAG	1 cut(s)	1070
SmoI	CTYRAG	1 cut(s)	1070
Sse9I	AATT	8 cut(s)	145, 367, 432, 539, 666, 734, 784, 1052
SsiI	CCGC	7 cut(s)	12, 132, 176, 251, 586, 671, 679
SspMI	CTAG	6 cut(s)	102, 135, 512, 533, 857, 887
SstI	GAGCTC	1 cut(s)	39
StyI	CCWWGG	3 cut(s)	101, 300, 1001
TaaI	ACNGT	1 cut(s)	1258
TaiI	ACGT	3 cut(s)	226, 1149, 1185
TaqI	TCGA	4 cut(s)	51, 94, 190, 1198
TaqII	GACCGA	1 cut(s)	935
TasI	AATT	8 cut(s)	145, 367, 432, 539, 666, 734, 784, 1052
TauI	GCSGC	2 cut(s)	14, 134
TfiI	GAWTC	2 cut(s)	320, 596
Tru1I	TTAA	3 cut(s)	492, 711, 1143
Tru9I	TTAA	3 cut(s)	492, 711, 1143
TscAI	CASTG	2 cut(s)	286, 761
TseI	GCWGC	4 cut(s)	152, 440, 851, 899
TspDTI	ATGAA	5 cut(s)	69, 234, 329, 571, 1040
TspGWI	ACGGA	4 cut(s)	29, 98, 423, 737
TspRI	CASTG	2 cut(s)	286, 761
VpaK11BI	GGWCC	1 cut(s)	1079
XapI	RAATTY	4 cut(s)	367, 432, 539, 784
XbaI	TCTAGA	1 cut(s)	532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	835
XmaJI	CCTAGG	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	6 cut(s)	102, 135, 512, 533, 857, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.