MD15G1419700.v1.1

pinin/SDK/memA/ protein conserved region

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
52112248 .. 52119123
6876 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1419700.v1.1.491

Sequence Viewer

Length: 1341 bp
ATGGGAACCGCCACAGTTGAGAAAACTCAGGAGGAGCTCCGTAAGGAGATCGATGAACTCCAACGCCAACAGCGCGAGATTACAGAACGGCTTCGAGACCCTAGGGGACTCCGGAAGGGAGGCTTGGTGGCAGCTGGTCCTCGCAATTTTGCCGGCAATGGTGCTCGACCGCGTGGATTTGCACGACCGGCAGATAGAGCTGATGCAGAGGATCAACGTCCAGCAAAACGCCGGCTTTCGTCAGCGGTTGTCAAGGTGGAGGATGGAGAAATCACTGAAACTGCTGAAGATGCCAAGGATGTGAAGACGAATGATTCAGCTGTTGAAGGTACGGATGATCAGAGTGATAGGAAGTTGGCGAATTCCCAACAAAGTGGCTGGTCAAGGAGGGAAGGAAATCATGGAGCAGCAAAGAAGGATTTTGAAATTCCAACAGCAGATCATGTTCCGAGAGTATTGCCAAAAGAACAAGACCCCAGCTTGGTTAATAGGAACAAAAGAATGCTAGGACAACTTTTGGGGACTCTAGAGAAATTCAGGAAAGAAGACTTGCAACTTTCAGCGACAGAGGGATTCATGCGGAGATCAAATTCTTTACAGAGAGCTGAGCAAAGAGCACGAGAAGAAAGTGAAAGACTGAGGCAACAAGAGCGTGAACAAATTGCGGAAAAGCGGAGGAGAGATCTGACTCTTCGGGCACGTGTTAATGCCAAGACGGAAGAAAAGAAATTGGAACTTCTTTTTCTTCAGTGGAGTGAGCATAATAAAAGACTTGGGAATTTTATAAGGTATAAGATTCTATTCATGCGAATAGTAGTGTTGAAGCAACCTGATGACTGGATGTTTCCTGCATTATTGTGGGGTTTTAGGACTAAAACAGAGCCTCCAATATATTATCTCCCCAAGAAATCATTAGAAGAGGATGCTGCGCTAACTGAGCAGCAAAAAGAAAAGGAGTTTCTAGCATGGAAAGCTGCACGAAGGGAAGAACTGACCGAATATCAGAAGCAGATTGGGGAGCAGTATACTGCCAATGTTGAAAAGGAGTTAGAGAGGTGGCAAAATGCAAGGACACCAAGGAAAGCGAACAACGATGTCATGAACTTACAGGAAACAATGGACAAAGAATTAGACACGCACAGGCTTGAGCATGGTCCCAAGAAAAGAACGATCCCTGATGGAAGCAACGACGAAGATGAGGATGATGTGGAAGATATTAATGTAGCAGAGGACGACATGATTGATGATGTGCTCGACGTTGATGATAACAGTCGAAGGGGTGATGAAATAGCTAAACCGGACGCAGGTAATACTAGTCCAAACGCAGATACAGTTGAGTAG

Protein Analysis

447

Amino Acids

51.52

Weight (kDa)

5.53

Isoelectric Point (pI)

56.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pinin_SDK_memA PF04696 162 - 265 5.5e-16 pinin/SDK/memA/ protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 785
Acc36I ACCTGC 1 cut(s) 1295
AccI GTMKAC 1 cut(s) 1025
AccII CGCG 2 cut(s) 75, 172
AccIII TCCGGA 1 cut(s) 111
AciI CCGC 6 cut(s) 9, 170, 245, 580, 665, 673
AclWI GGATC 2 cut(s) 219, 1165
AcsI RAATTY 5 cut(s) 361, 426, 533, 589, 778
AcuI CTGAAG 2 cut(s) 306, 731
AcvI CACGTG 1 cut(s) 701
AfaI GTAC 1 cut(s) 331
AfiI CCNNNNNNNGG 2 cut(s) 481, 1304
AflIII ACRYGT 1 cut(s) 700
AgsI TTSAA 4 cut(s) 326, 425, 823, 1040
AhlI ACTAGT 1 cut(s) 1313
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 8 cut(s) 37, 134, 200, 320, 480, 605, 974, 1292
AluI AGCT 8 cut(s) 37, 134, 200, 320, 480, 605, 974, 1292
Alw21I GWGCWC 4 cut(s) 39, 166, 619, 1254
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 2 cut(s) 219, 1165
Aor13HI TCCGGA 1 cut(s) 111
ApeKI GCWGC 5 cut(s) 131, 407, 926, 940, 974
ApoI RAATTY 5 cut(s) 361, 426, 533, 589, 778
AseI ATTAAT 1 cut(s) 1218
Asp700I GAANNNNTTC 1 cut(s) 90
AspA2I CCTAGG 1 cut(s) 101
AspLEI GCGC 2 cut(s) 75, 931
AspS9I GGNCC 2 cut(s) 137, 1154
AsuHPI GGTGA 1 cut(s) 1292
AvaII GGWCC 2 cut(s) 137, 1154
AvrII CCTAGG 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 700
BanII GRGCYC 1 cut(s) 39
BauI CACGAG 1 cut(s) 618
BbrPI CACGTG 1 cut(s) 701
BbsI GAAGAC 2 cut(s) 311, 552
Bbv12I GWGCWC 4 cut(s) 39, 166, 619, 1254
BbvI GCAGC 5 cut(s) 143, 419, 913, 952, 961
BccI CCATC 2 cut(s) 257, 1172
BceAI ACGGC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 439, 473
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 90
BcuI ACTAGT 1 cut(s) 1313
BfaI CTAG 5 cut(s) 102, 506, 527, 962, 1314
BfuAI ACCTGC 1 cut(s) 1295
BglII AGATCT 1 cut(s) 682
BisI GCNGC 5 cut(s) 132, 408, 927, 941, 975
BlnI CCTAGG 1 cut(s) 101
BlpI GCTNAGC 1 cut(s) 606
BlsI GCNGC 5 cut(s) 133, 409, 928, 942, 976
Bme18I GGWCC 2 cut(s) 137, 1154
BmgT120I GGNCC 2 cut(s) 137, 1154
BmiI GGNNCC 2 cut(s) 7, 1156
BmsI GCATC 3 cut(s) 193, 280, 913
BpiI GAAGAC 2 cut(s) 311, 552
Bpu1102I GCTNAGC 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 1166
Bsa29I ATCGAT 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 701
BsaI GGTCTC 1 cut(s) 90
BsaJI CCNNGG 3 cut(s) 101, 294, 1076
BsaWI WCCGGW 2 cut(s) 111, 1297
BsaXI ACNNNNNCTCC 4 cut(s) 111, 141, 868, 898
Bsc4I CCNNNNNNNGG 2 cut(s) 481, 1304
Bse118I RCCGGY 3 cut(s) 152, 187, 231
Bse1I ACTGG 1 cut(s) 842
Bse3DI GCAATG 1 cut(s) 163
BseAI TCCGGA 1 cut(s) 111
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 3 cut(s) 101, 294, 1076
BseGI GGATG 6 cut(s) 268, 304, 340, 846, 928, 1207
BseLI CCNNNNNNNGG 2 cut(s) 481, 1304
BseMI GCAATG 1 cut(s) 163
BseMII CTCAG 4 cut(s) 41, 597, 629, 927
BseNI ACTGG 1 cut(s) 842
BseRI GAGGAG 2 cut(s) 47, 691
BseSI GKGCMC 1 cut(s) 700
BseXI GCAGC 5 cut(s) 143, 419, 913, 952, 961
BseYI CCCAGC 1 cut(s) 476
BsgI GTGCAG 1 cut(s) 960
Bsh1236I CGCG 2 cut(s) 75, 172
Bsh1285I CGRYCG 2 cut(s) 170, 188
BshVI ATCGAT 1 cut(s) 51
BsiEI CGRYCG 2 cut(s) 170, 188
BsiHKAI GWGCWC 4 cut(s) 39, 166, 619, 1254
BsiSI CCGG 5 cut(s) 112, 153, 188, 232, 1298
BslFI GGGAC 3 cut(s) 120, 535, 1140
BslI CCNNNNNNNGG 2 cut(s) 481, 1304
BsmAI GTCTC 1 cut(s) 90
BsmFI GGGAC 3 cut(s) 120, 535, 1140
BsmI GAATGC 1 cut(s) 507
Bso31I GGTCTC 1 cut(s) 90
Bsp1286I GDGCHC 5 cut(s) 39, 166, 619, 700, 1254
Bsp13I TCCGGA 1 cut(s) 111
Bsp143I GATC 7 cut(s) 48, 211, 337, 439, 584, 682, 1170
Bsp1720I GCTNAGC 1 cut(s) 606
BspACI CCGC 6 cut(s) 9, 170, 245, 580, 665, 673
BspCNI CTCAG 4 cut(s) 40, 598, 630, 928
BspDI ATCGAT 1 cut(s) 51
BspEI TCCGGA 1 cut(s) 111
BspFNI CGCG 2 cut(s) 75, 172
BspHI TCATGA 1 cut(s) 1098
BspLI GGNNCC 2 cut(s) 7, 1156
BspMI ACCTGC 1 cut(s) 1295
BspPI GGATC 2 cut(s) 219, 1165
BspTNI GGTCTC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 163
BsrFI RCCGGY 3 cut(s) 152, 187, 231
BsrI ACTGG 1 cut(s) 842
BssAI RCCGGY 3 cut(s) 152, 187, 231
BssECI CCNNGG 3 cut(s) 101, 294, 1076
BssMI GATC 7 cut(s) 48, 211, 337, 439, 584, 682, 1170
BssNAI GTATAC 1 cut(s) 1026
BssSI CACGAG 1 cut(s) 618
BssT1I CCWWGG 3 cut(s) 101, 294, 1076
Bst1107I GTATAC 1 cut(s) 1026
Bst2BI CACGAG 1 cut(s) 618
Bst4CI ACNGT 3 cut(s) 16, 1271, 1333
Bst6I CTCTTC 2 cut(s) 696, 912
BstBAI YACGTR 1 cut(s) 701
BstC8I GCNNGC 2 cut(s) 154, 233
BstDEI CTNAG 4 cut(s) 27, 606, 638, 936
BstF5I GGATG 6 cut(s) 268, 304, 340, 846, 928, 1207
BstFNI CGCG 2 cut(s) 75, 172
BstHHI GCGC 2 cut(s) 75, 931
BstKTI GATC 7 cut(s) 51, 214, 340, 442, 587, 685, 1173
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 7 cut(s) 48, 211, 337, 439, 584, 682, 1170
BstMCI CGRYCG 2 cut(s) 170, 188
BstMWI GCNNNNNNNGC 7 cut(s) 72, 188, 197, 290, 649, 937, 971
BstSLI GKGCMC 1 cut(s) 700
BstUI CGCG 2 cut(s) 75, 172
BstV1I GCAGC 5 cut(s) 143, 419, 913, 952, 961
BstV2I GAAGAC 2 cut(s) 311, 552
BstX2I RGATCY 1 cut(s) 682
BstXI CCANNNNNNTGG 1 cut(s) 374
BstYI RGATCY 1 cut(s) 682
BstZ17I GTATAC 1 cut(s) 1026
Bsu15I ATCGAT 1 cut(s) 51
BsuTUI ATCGAT 1 cut(s) 51
BtsCI GGATG 6 cut(s) 268, 304, 340, 846, 928, 1207
BtsIMutI CAGTG 2 cut(s) 273, 755
BveI ACCTGC 1 cut(s) 1295
Cac8I GCNNGC 2 cut(s) 154, 233
CciI TCATGA 1 cut(s) 1098
CfoI GCGC 2 cut(s) 75, 931
Cfr10I RCCGGY 3 cut(s) 152, 187, 231
Cfr13I GGNCC 2 cut(s) 137, 1154
ClaI ATCGAT 1 cut(s) 51
CseI GACGC 1 cut(s) 1310
Csp6I GTAC 1 cut(s) 330
CviAII CATG 8 cut(s) 401, 443, 577, 805, 966, 1099, 1151, 1237
CviQI GTAC 1 cut(s) 330
DdeI CTNAG 4 cut(s) 27, 606, 638, 936
DpnI GATC 7 cut(s) 50, 213, 339, 441, 586, 684, 1172
DpnII GATC 7 cut(s) 48, 211, 337, 439, 584, 682, 1170
Eam1104I CTCTTC 2 cut(s) 696, 912
EarI CTCTTC 2 cut(s) 696, 912
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 3 cut(s) 101, 294, 1076
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 90
Eco47I GGWCC 2 cut(s) 137, 1154
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 2 cut(s) 306, 731
Eco72I CACGTG 1 cut(s) 701
EcoICRI GAGCTC 1 cut(s) 37
EcoRI GAATTC 1 cut(s) 361
EcoT14I CCWWGG 3 cut(s) 101, 294, 1076
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 3 cut(s) 101, 294, 1076
FaeI CATG 8 cut(s) 404, 446, 580, 808, 969, 1102, 1154, 1240
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FaqI GGGAC 3 cut(s) 120, 535, 1140
FatI CATG 8 cut(s) 400, 442, 576, 804, 965, 1098, 1150, 1236
FbaI TGATCA 1 cut(s) 337
FblI GTMKAC 1 cut(s) 1025
Fnu4HI GCNGC 5 cut(s) 132, 408, 927, 941, 975
FokI GGATG 6 cut(s) 275, 311, 347, 853, 935, 1214
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 5 cut(s) 132, 408, 927, 941, 975
FspBI CTAG 5 cut(s) 102, 506, 527, 962, 1314
GlaI GCGC 2 cut(s) 74, 930
GluI GCNGC 5 cut(s) 132, 408, 927, 941, 975
GsaI CCCAGC 1 cut(s) 480
HapII CCGG 5 cut(s) 112, 153, 188, 232, 1298
HgaI GACGC 1 cut(s) 1310
HhaI GCGC 2 cut(s) 75, 931
Hin1II CATG 8 cut(s) 404, 446, 580, 808, 969, 1102, 1154, 1240
Hin6I GCGC 2 cut(s) 73, 929
HinP1I GCGC 2 cut(s) 73, 929
HinfI GANTC 6 cut(s) 108, 314, 523, 573, 688, 796
HpaII CCGG 5 cut(s) 112, 153, 188, 232, 1298
HphI GGTGA 1 cut(s) 1292
Hpy166II GTNNAC 2 cut(s) 656, 1026
Hpy188I TCNGA 4 cut(s) 342, 450, 687, 1005
Hpy188III TCNNGA 6 cut(s) 29, 95, 112, 527, 538, 1099
Hpy8I GTNNAC 2 cut(s) 656, 1026
Hpy99I CGWCG 2 cut(s) 1193, 1259
HpyAV CCTTC 6 cut(s) 109, 320, 386, 409, 975, 1269
HpyCH4III ACNGT 3 cut(s) 16, 1271, 1333
HpyCH4IV ACGT 3 cut(s) 217, 700, 1257
HpyCH4V TGCA 6 cut(s) 182, 206, 553, 851, 977, 1067
HpyF10VI GCNNNNNNNGC 7 cut(s) 72, 188, 197, 290, 649, 937, 971
HpyF3I CTNAG 4 cut(s) 27, 606, 638, 936
HpySE526I ACGT 3 cut(s) 217, 700, 1257
Hsp92II CATG 8 cut(s) 404, 446, 580, 808, 969, 1102, 1154, 1240
HspAI GCGC 2 cut(s) 73, 929
Kpn2I TCCGGA 1 cut(s) 111
KroI GCCGGC 2 cut(s) 152, 231
KroNI GCCGGC 2 cut(s) 154, 233
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 7 cut(s) 48, 211, 337, 439, 584, 682, 1170
LmnI GCTCC 4 cut(s) 34, 42, 404, 1018
Lsp1109I GCAGC 5 cut(s) 143, 419, 913, 952, 961
LweI GCATC 3 cut(s) 193, 280, 913
MaeI CTAG 5 cut(s) 102, 506, 527, 962, 1314
MaeII ACGT 3 cut(s) 217, 700, 1257
MalI GATC 7 cut(s) 50, 213, 339, 441, 586, 684, 1172
MboI GATC 7 cut(s) 48, 211, 337, 439, 584, 682, 1170
MflI RGATCY 1 cut(s) 682
MhlI GDGCHC 5 cut(s) 39, 166, 619, 700, 1254
MluCI AATT 9 cut(s) 145, 361, 426, 533, 589, 660, 728, 778, 1127
MlyI GAGTC 3 cut(s) 102, 517, 682
MmeI TCCRAC 2 cut(s) 85, 455
MroI TCCGGA 1 cut(s) 111
MroNI GCCGGC 2 cut(s) 152, 231
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 3 cut(s) 486, 705, 1218
MslI CAYNNNNRTG 1 cut(s) 856
MspA1I CMGCKG 3 cut(s) 134, 245, 320
MspI CCGG 5 cut(s) 112, 153, 188, 232, 1298
Mva1269I GAATGC 1 cut(s) 507
MvnI CGCG 2 cut(s) 75, 172
MwoI GCNNNNNNNGC 7 cut(s) 72, 188, 197, 290, 649, 937, 971
NaeI GCCGGC 2 cut(s) 154, 233
NdeII GATC 7 cut(s) 48, 211, 337, 439, 584, 682, 1170
NgoMIV GCCGGC 2 cut(s) 152, 231
NlaIII CATG 8 cut(s) 404, 446, 580, 808, 969, 1102, 1154, 1240
NlaIV GGNNCC 2 cut(s) 7, 1156
PagI TCATGA 1 cut(s) 1098
PctI GAATGC 1 cut(s) 507
PdiI GCCGGC 2 cut(s) 154, 233
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 3 cut(s) 314, 573, 796
PkrI GCNGC 5 cut(s) 133, 409, 928, 942, 976
PleI GAGTC 3 cut(s) 102, 517, 682
PmaCI CACGTG 1 cut(s) 701
PmlI CACGTG 1 cut(s) 701
PpsI GAGTC 3 cut(s) 102, 517, 682
Ppu21I YACGTR 1 cut(s) 701
PshBI ATTAAT 1 cut(s) 1218
PsiI TTATAA 1 cut(s) 785
Psp124BI GAGCTC 1 cut(s) 39
PspCI CACGTG 1 cut(s) 701
PspFI CCCAGC 1 cut(s) 476
PspN4I GGNNCC 2 cut(s) 7, 1156
PspPI GGNCC 2 cut(s) 137, 1154
PsuI RGATCY 1 cut(s) 682
PvuII CAGCTG 2 cut(s) 134, 320
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
RseI CAYNNNNRTG 1 cut(s) 856
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 3 cut(s) 486, 705, 1218
SatI GCNGC 5 cut(s) 132, 408, 927, 941, 975
Sau3AI GATC 7 cut(s) 48, 211, 337, 439, 584, 682, 1170
Sau96I GGNCC 2 cut(s) 137, 1154
SchI GAGTC 3 cut(s) 102, 517, 682
SduI GDGCHC 5 cut(s) 39, 166, 619, 700, 1254
SfaNI GCATC 3 cut(s) 193, 280, 913
SinI GGWCC 2 cut(s) 137, 1154
SmiMI CAYNNNNRTG 1 cut(s) 856
SmlI CTYRAG 1 cut(s) 1145
SmoI CTYRAG 1 cut(s) 1145
SpeI ACTAGT 1 cut(s) 1313
Sse9I AATT 9 cut(s) 145, 361, 426, 533, 589, 660, 728, 778, 1127
SsiI CCGC 6 cut(s) 9, 170, 245, 580, 665, 673
SspMI CTAG 5 cut(s) 102, 506, 527, 962, 1314
SstI GAGCTC 1 cut(s) 39
StyI CCWWGG 3 cut(s) 101, 294, 1076
TaaI ACNGT 3 cut(s) 16, 1271, 1333
TaiI ACGT 3 cut(s) 220, 703, 1260
TaqI TCGA 5 cut(s) 51, 94, 166, 1254, 1273
TaqII GACCGA 1 cut(s) 1010
TasI AATT 9 cut(s) 145, 361, 426, 533, 589, 660, 728, 778, 1127
TfiI GAWTC 3 cut(s) 314, 573, 796
Tru1I TTAA 3 cut(s) 486, 705, 1218
Tru9I TTAA 3 cut(s) 486, 705, 1218
TscAI CASTG 2 cut(s) 280, 755
TseI GCWGC 5 cut(s) 131, 407, 926, 940, 974
TspDTI ATGAA 5 cut(s) 69, 565, 793, 1115, 1299
TspGWI ACGGA 3 cut(s) 29, 347, 731
TspRI CASTG 2 cut(s) 280, 755
VpaK11BI GGWCC 2 cut(s) 137, 1154
VspI ATTAAT 1 cut(s) 1218
XapI RAATTY 5 cut(s) 361, 426, 533, 589, 778
XbaI TCTAGA 1 cut(s) 526
XmaJI CCTAGG 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 1025
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 5 cut(s) 102, 506, 527, 962, 1314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.