Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005124.1

Orthogroup ID

OG0007408

Physical Location & Seq

Genomic Coordinates Reverse (-)

103984 .. 108576

Gene Structure 4593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005124.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

atggcaagcgccgcagttgagaaaacagaggaggtgctccgcaaggagatcgatgagctccaacgccagcagcgcgagattacggaacgccttcgagaccctaggggactccgcaagggaggaggaggaggaggctcggcggctgccccgccccgtaactttggtgccaatggtgctcgcccccgaggctttactcgacctgcagatagggctgatgtggaggatcaacctcctgcgaaacgccggctttcgtcagctgttgtcaaggtcgaggatggagaaattgttgagagtgctgaaggaaccaaggatgcgaagaagaaggagtcaagcgaggcggccatagctgatcacagtgataggaggttgtcaaattcccaacaaggtagctggttaaggagggatggcaaccatggagcaggcaagaaggaatttgacattccagcaacggatcatgttccaagggtattgccaaagcaagaagaccctagcttggttaataggaacaaaagaatgctcgggcaacttttgggcactttagagaaattcaggaaagaaaacgtgcaactctcaggaacagaagctttcatgcggagatcgaattctttacaaagagccgaagaaagagcacgtgaagaaagtgaaagacttaggatacaagagcgcgaacaaattgcggaaaagcggaggagagatctgactctgcgggcacgtgtttctgccaagacggaagaaaaaaaattggaactgctttttcttcagtggagtgagcatcacaagaaacttagcaattttataaggaccaaggcagagcctccaatatattatctacccaagaaaccattggatgaggatgctaccttggctgagcagcaaaaagaaaaggaattcctagaatggaaagcatcacgaagggaggaactgagcaattatcagaagcagattggggagcagtatctagcaaatgttgaaaaggagttggagaggtggcaaaatgcaaggaaagcaaggaaagcaaacaatgatacgatgaacttacaggaaacaatggacaaagagttggacacacataggcttgagcatggtcccaagaaaagaaagatccctgatggaagcaacaacgaggatgaggatgatgtggaagatatcaatgtagtggaggatgacatgatggatgatgtgttggatgttgatgataacagtagaatggttgatgaaacagctaaatcagatgcaggcaatgccagtccaaatgcggagaacattgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

Pinin_SDK_memA

Protein Analysis

423

Amino Acids

48.37

Weight (kDa)

5.9

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15200 AT1G15200 AT1G15200 AT1G15200
fragaria_vesca	FvH4_5g29810 FvH4_5g29810 FvH4_5g29810 FvH4_5g29810 FvH4_5g29810 FvH4_5g29810
malus_domestica	MD08G1227300.v1.1 MD15G1419700.v1.1
prunus_persica	Prupe.1G564400_v2.0.a1
pyrus_communis	pycom08g19830 pycom15g37250
rosa_chinensis	RchiOBHm_Chr7g0223331
rosa_laevigata	RLG00000001987
rosa_multiflora	Rmu_sc0005124.1_g000020
rosa_roxburghii	Rroxscaffold_3G00235910
rosa_rugosa	Rorug07G0216100
rosa_samantha	Rh7AG359800 Rh7BG349700 Rh7CG378200 Rh7DG355100
rosa_wichuraiana	Rw7G030580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	797
Acc36I	ACCTGC	1 cut(s)	208
AccB1I	GGYRCC	1 cut(s)	164
AccII	CGCG	2 cut(s)	75, 666
AclWI	GGATC	3 cut(s)	231, 459, 1096
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	5 cut(s)	373, 431, 545, 601, 887
AcuI	CTGAAG	2 cut(s)	318, 743
AcvI	CACGTG	2 cut(s)	632, 713
AfiI	CCNNNNNNNGG	1 cut(s)	493
AflIII	ACRYGT	1 cut(s)	712
AgsI	TTSAA	1 cut(s)	971
AluBI	AGCT	7 cut(s)	58, 257, 347, 390, 492, 584, 1223
AluI	AGCT	7 cut(s)	58, 257, 347, 390, 492, 584, 1223
Alw21I	GWGCWC	4 cut(s)	39, 60, 178, 631
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	3 cut(s)	231, 459, 1096
Ama87I	CYCGRG	2 cut(s)	183, 518
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	3 cut(s)	70, 143, 871
ApoI	RAATTY	5 cut(s)	373, 431, 545, 601, 887
Asp700I	GAANNNNTTC	1 cut(s)	90
AspA2I	CCTAGG	1 cut(s)	101
AspLEI	GCGC	3 cut(s)	11, 75, 666
AspS9I	GGNCC	2 cut(s)	801, 1085
AvaI	CYCGRG	2 cut(s)	183, 518
AvaII	GGWCC	2 cut(s)	801, 1085
AvrII	CCTAGG	1 cut(s)	101
BaeGI	GKGCMC	2 cut(s)	536, 712
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	60
BbrPI	CACGTG	2 cut(s)	632, 713
BbsI	GAAGAC	1 cut(s)	489
Bbv12I	GWGCWC	4 cut(s)	39, 60, 178, 631
BbvI	GCAGC	3 cut(s)	82, 130, 883
BccI	CCATC	4 cut(s)	269, 398, 1103, 1165
BcgI	CGANNNNNNTGC	4 cut(s)	31, 65, 656, 690
BciVI	GTATCC	1 cut(s)	648
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	4 cut(s)	102, 489, 893, 959
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	648
BglI	GCCNNNNNGGC	1 cut(s)	186
BglII	AGATCT	1 cut(s)	694
BisI	GCNGC	6 cut(s)	12, 71, 141, 144, 339, 872
BlnI	CCTAGG	1 cut(s)	101
BlpI	GCTNAGC	1 cut(s)	867
BlsI	GCNGC	6 cut(s)	13, 72, 142, 145, 340, 873
Bme18I	GGWCC	2 cut(s)	801, 1085
BmeT110I	CYCGRG	2 cut(s)	183, 518
BmgT120I	GGNCC	2 cut(s)	801, 1085
BmiI	GGNNCC	3 cut(s)	166, 304, 1087
BmsI	GCATC	5 cut(s)	301, 781, 844, 914, 1222
BpiI	GAAGAC	1 cut(s)	489
Bpu1102I	GCTNAGC	1 cut(s)	867
BpuEI	CTTGAG	1 cut(s)	1097
Bsa29I	ATCGAT	1 cut(s)	51
BsaAI	YACGTR	2 cut(s)	632, 713
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	7 cut(s)	101, 184, 306, 412, 461, 804, 861
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	493
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	1245
Bse3DI	GCAATG	1 cut(s)	1246
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	7 cut(s)	101, 184, 306, 412, 461, 804, 861
BseLI	CCNNNNNNNGG	1 cut(s)	493
BseMI	GCAATG	1 cut(s)	1246
BseMII	CTCAG	3 cut(s)	585, 858, 914
BseNI	ACTGG	1 cut(s)	1245
BseRI	GAGGAG	6 cut(s)	44, 135, 138, 141, 144, 703
BseSI	GKGCMC	2 cut(s)	536, 712
BseXI	GCAGC	3 cut(s)	82, 130, 883
Bsh1236I	CGCG	2 cut(s)	75, 666
BshFI	GGCC	1 cut(s)	341
BshNI	GGYRCC	1 cut(s)	164
BshVI	ATCGAT	1 cut(s)	51
BsiHKAI	GWGCWC	4 cut(s)	39, 60, 178, 631
BsiHKCI	CYCGRG	2 cut(s)	183, 518
BsiSI	CCGG	1 cut(s)	244
BslFI	GGGAC	2 cut(s)	120, 1071
BslI	CCNNNNNNNGG	1 cut(s)	493
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	2 cut(s)	120, 1071
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	1 cut(s)	341
Bso31I	GGTCTC	1 cut(s)	90
BsoBI	CYCGRG	2 cut(s)	183, 518
Bsp1286I	GDGCHC	6 cut(s)	39, 60, 178, 536, 631, 712
Bsp143I	GATC	7 cut(s)	48, 223, 349, 451, 596, 694, 1101
Bsp1720I	GCTNAGC	1 cut(s)	867
Bsp19I	CCATGG	1 cut(s)	412
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	3 cut(s)	584, 859, 915
BspDI	ATCGAT	1 cut(s)	51
BspFNI	CGCG	2 cut(s)	75, 666
BspLI	GGNNCC	3 cut(s)	166, 304, 1087
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	3 cut(s)	231, 459, 1096
BspT107I	GGYRCC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	1246
BsrFI	RCCGGY	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	1245
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	7 cut(s)	101, 184, 306, 412, 461, 804, 861
BssMI	GATC	7 cut(s)	48, 223, 349, 451, 596, 694, 1101
BssT1I	CCWWGG	6 cut(s)	101, 306, 412, 461, 804, 861
Bst4CI	ACNGT	2 cut(s)	356, 1202
BstAPI	GCANNNNNTGC	1 cut(s)	1241
BstBAI	YACGTR	2 cut(s)	632, 713
BstC8I	GCNNGC	7 cut(s)	7, 68, 178, 245, 421, 708, 1237
BstDEI	CTNAG	5 cut(s)	571, 650, 785, 867, 923
BstDSI	CCRYGG	1 cut(s)	412
BstFNI	CGCG	2 cut(s)	75, 666
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	3 cut(s)	11, 75, 666
BstKTI	GATC	7 cut(s)	51, 226, 352, 454, 599, 697, 1104
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	7 cut(s)	48, 223, 349, 451, 596, 694, 1101
BstSFI	CTRYAG	1 cut(s)	201
BstSLI	GKGCMC	2 cut(s)	536, 712
BstUI	CGCG	2 cut(s)	75, 666
BstV1I	GCAGC	3 cut(s)	82, 130, 883
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	2 cut(s)	694, 1101
BstYI	RGATCY	2 cut(s)	694, 1101
Bsu15I	ATCGAT	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	341
BsuTUI	ATCGAT	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	412
BtsIMutI	CAGTG	2 cut(s)	361, 767
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	7 cut(s)	7, 68, 178, 245, 421, 708, 1237
CfoI	GCGC	3 cut(s)	11, 75, 666
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	2 cut(s)	801, 1085
ClaI	ATCGAT	1 cut(s)	51
CviAII	CATG	5 cut(s)	413, 455, 589, 1082, 1168
DdeI	CTNAG	5 cut(s)	571, 650, 785, 867, 923
DpnI	GATC	7 cut(s)	50, 225, 351, 453, 598, 696, 1103
DpnII	GATC	7 cut(s)	48, 223, 349, 451, 596, 694, 1101
EaeI	YGGCCR	1 cut(s)	339
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	6 cut(s)	101, 306, 412, 461, 804, 861
Eco24I	GRGCYC	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	90
Eco32I	GATATC	1 cut(s)	1147
Eco47I	GGWCC	2 cut(s)	801, 1085
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	2 cut(s)	318, 743
Eco72I	CACGTG	2 cut(s)	632, 713
Eco88I	CYCGRG	2 cut(s)	183, 518
EcoICRI	GAGCTC	1 cut(s)	58
EcoRI	GAATTC	2 cut(s)	601, 887
EcoRV	GATATC	1 cut(s)	1147
EcoT14I	CCWWGG	6 cut(s)	101, 306, 412, 461, 804, 861
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	6 cut(s)	101, 306, 412, 461, 804, 861
FaeI	CATG	5 cut(s)	416, 458, 592, 1085, 1171
FaiI	YATR	9 cut(s)	344, 414, 456, 590, 797, 823, 1071, 1083, 1169
FaqI	GGGAC	2 cut(s)	120, 1071
FatI	CATG	5 cut(s)	412, 454, 588, 1081, 1167
FauI	CCCGC	2 cut(s)	156, 699
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	6 cut(s)	12, 71, 141, 144, 339, 872
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	6 cut(s)	12, 71, 141, 144, 339, 872
FspBI	CTAG	4 cut(s)	102, 489, 893, 959
GlaI	GCGC	3 cut(s)	10, 74, 665
GluI	GCNGC	6 cut(s)	12, 71, 141, 144, 339, 872
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	341
HapII	CCGG	1 cut(s)	244
HhaI	GCGC	3 cut(s)	11, 75, 666
Hin1II	CATG	5 cut(s)	416, 458, 592, 1085, 1171
Hin6I	GCGC	3 cut(s)	9, 73, 664
HinP1I	GCGC	3 cut(s)	9, 73, 664
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	3 cut(s)	108, 326, 700
HpaII	CCGG	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	699, 936, 1231
Hpy188III	TCNNGA	4 cut(s)	95, 550, 573, 909
HpyAV	CCTTC	5 cut(s)	101, 293, 316, 421, 906
HpyCH4III	ACNGT	2 cut(s)	356, 1202
HpyCH4IV	ACGT	3 cut(s)	561, 631, 712
HpyCH4V	TGCA	4 cut(s)	203, 565, 998, 1235
HpyF3I	CTNAG	5 cut(s)	571, 650, 785, 867, 923
HpySE526I	ACGT	3 cut(s)	561, 631, 712
Hsp92II	CATG	5 cut(s)	416, 458, 592, 1085, 1171
HspAI	GCGC	3 cut(s)	9, 73, 664
KroI	GCCGGC	1 cut(s)	243
KroNI	GCCGGC	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	7 cut(s)	48, 223, 349, 451, 596, 694, 1101
LmnI	GCTCC	4 cut(s)	42, 63, 416, 949
Lsp1109I	GCAGC	3 cut(s)	82, 130, 883
LweI	GCATC	5 cut(s)	301, 781, 844, 914, 1222
MaeI	CTAG	4 cut(s)	102, 489, 893, 959
MaeII	ACGT	3 cut(s)	561, 631, 712
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	7 cut(s)	50, 225, 351, 453, 598, 696, 1103
MboI	GATC	7 cut(s)	48, 223, 349, 451, 596, 694, 1101
MboII	GAAGA	8 cut(s)	328, 331, 494, 632, 647, 743, 749, 1154
MflI	RGATCY	2 cut(s)	694, 1101
MhlI	GDGCHC	6 cut(s)	39, 60, 178, 536, 631, 712
MlyI	GAGTC	3 cut(s)	102, 335, 694
MmeI	TCCRAC	4 cut(s)	85, 960, 1041, 1164
MroNI	GCCGGC	1 cut(s)	243
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	2 cut(s)	395, 498
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	1 cut(s)	244
Mva1269I	GAATGC	1 cut(s)	519
MvnI	CGCG	2 cut(s)	75, 666
NaeI	GCCGGC	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	7 cut(s)	48, 223, 349, 451, 596, 694, 1101
NgoMIV	GCCGGC	1 cut(s)	243
NlaIII	CATG	5 cut(s)	416, 458, 592, 1085, 1171
NlaIV	GGNNCC	3 cut(s)	166, 304, 1087
NmeAIII	GCCGAG	1 cut(s)	116
PctI	GAATGC	1 cut(s)	519
PdiI	GCCGGC	1 cut(s)	245
PdmI	GAANNNNTTC	1 cut(s)	90
PkrI	GCNGC	6 cut(s)	13, 72, 142, 145, 340, 873
PleI	GAGTC	3 cut(s)	102, 334, 694
PmaCI	CACGTG	2 cut(s)	632, 713
PmlI	CACGTG	2 cut(s)	632, 713
PpsI	GAGTC	3 cut(s)	102, 334, 694
Ppu21I	YACGTR	2 cut(s)	632, 713
PsiI	TTATAA	1 cut(s)	797
Psp124BI	GAGCTC	1 cut(s)	60
PspCI	CACGTG	2 cut(s)	632, 713
PspN4I	GGNNCC	3 cut(s)	166, 304, 1087
PspPI	GGNCC	2 cut(s)	801, 1085
PstI	CTGCAG	1 cut(s)	205
PsuI	RGATCY	2 cut(s)	694, 1101
PvuII	CAGCTG	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	395, 498
SatI	GCNGC	6 cut(s)	12, 71, 141, 144, 339, 872
Sau3AI	GATC	7 cut(s)	48, 223, 349, 451, 596, 694, 1101
Sau96I	GGNCC	2 cut(s)	801, 1085
SchI	GAGTC	3 cut(s)	102, 335, 694
SduI	GDGCHC	6 cut(s)	39, 60, 178, 536, 631, 712
SfaNI	GCATC	5 cut(s)	301, 781, 844, 914, 1222
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	2 cut(s)	801, 1085
SmlI	CTYRAG	1 cut(s)	1076
SmoI	CTYRAG	1 cut(s)	1076
SspMI	CTAG	4 cut(s)	102, 489, 893, 959
SstI	GAGCTC	1 cut(s)	60
StyI	CCWWGG	6 cut(s)	101, 306, 412, 461, 804, 861
TaaI	ACNGT	2 cut(s)	356, 1202
TaiI	ACGT	3 cut(s)	564, 634, 715
TaqI	TCGA	5 cut(s)	51, 94, 196, 270, 599
TauI	GCSGC	3 cut(s)	14, 143, 341
Tru1I	TTAA	2 cut(s)	395, 498
Tru9I	TTAA	2 cut(s)	395, 498
TscAI	CASTG	2 cut(s)	361, 767
TseI	GCWGC	3 cut(s)	70, 143, 871
TspDTI	ATGAA	3 cut(s)	577, 1046, 1230
TspGWI	ACGGA	3 cut(s)	98, 464, 743
TspRI	CASTG	2 cut(s)	361, 767
VpaK11BI	GGWCC	2 cut(s)	801, 1085
XapI	RAATTY	5 cut(s)	373, 431, 545, 601, 887
XcmI	CCANNNNNNNNNTGG	1 cut(s)	841
XmaJI	CCTAGG	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	4 cut(s)	102, 489, 893, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.