Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006131

Physical Location & Seq

Genomic Coordinates Reverse (-)

5441072 .. 5443911

Gene Structure 2840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G15800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGACCGGCGGAGACTGGATTCACGAGGCTATGGGTGATGATTCATTAGTGGCGGAGGCTCTGATCTGTCTCCTCCATGCCGAGCCGTCACTTCCTGAGACGAAGAGCGGCGGCGCGTCGGATCTCAAGCTGAAGTGGAGCGTGCGTCAGCCGAGGACCAAGGCGGCGACGTTAAGGAAGAAGGGAGATCATGATACGCGTGCTAGTCCCACGACCCCACTTTCATGGAGCGGCGCAACCTCTTTTAGCGGCGGTGGAGGCGGTGCTGCTGCTGCCGTTGATGGATTTGAGGAGTCAAGTGGCGTTGTGAAACTGTCTGAGGCCGTTAGATCTAAGATAACTCAAACGAGTGTTACAACAAGCCCTTTCAAGAGATCAAGAAAGAAAAAGACACTTGCTCAACTTAAAGAGGAGGAGAGTGTGCTCTTAAAGGAAAGGAATGGCTTGAGAAATGAACTCGCAACTATGCAGGATCTGCTCAAGCAACAAAGAGCAAGAAACGAGTCTTTAAAGAAACTCCAGGCTGAGTCACAAAAGAATGATGATTCCTCCTTCTTGCTCCCTGACCTTAATATAGCTCTGGATAACAACTCGAGCCCTGAAAGTCTCTATGGAACCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.3

Weight (kDa)

8.61

Isoelectric Point (pI)

50.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15800 AT1G80610
fragaria_vesca	FvH4_6g29000
malus_domestica	MD09G1223300.v1.1 MD17G1219700.v1.1
prunus_persica	Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1
pyrus_communis	pycom12419g00130 pycom17g22450
rosa_chinensis	RchiOBHm_Chr2g0133521
rosa_laevigata	RLG00000019351
rosa_multiflora	Rmu_co8487101.1_g000001 Rmu_sc0000924.1_g000058
rosa_roxburghii	Rroxscaffold_2G00111000
rosa_rugosa	Rorug02G0312600
rosa_samantha	Rh2AG365500 Rh2BG371100 Rh2CG348700 Rh2DG387900
rosa_wichuraiana	Rw0G005120 Rw2G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	108, 231
AccII	CGCG	2 cut(s)	116, 199
AciI	CCGC	9 cut(s)	9, 53, 108, 111, 164, 231, 249, 252, 261
AclWI	GGATC	2 cut(s)	129, 480
AcuI	CTGAAG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	3 cut(s)	130, 578, 621
AluI	AGCT	3 cut(s)	130, 578, 621
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	4 cut(s)	6, 74, 92, 611
AlwI	GGATC	2 cut(s)	129, 480
AlwNI	CAGNNNCTG	1 cut(s)	475
Ama87I	CYCGRG	1 cut(s)	592
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	3 cut(s)	266, 269, 272
AspLEI	GCGC	2 cut(s)	116, 236
AspS9I	GGNCC	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	599
BauI	CACGAG	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	3 cut(s)	253, 256, 259
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	3 cut(s)	70, 260, 308
BciT130I	CCWGG	1 cut(s)	521
BcoDI	GTCTC	4 cut(s)	6, 74, 92, 611
BfaI	CTAG	1 cut(s)	204
BglII	AGATCT	1 cut(s)	329
BisI	GCNGC	8 cut(s)	109, 112, 165, 232, 250, 267, 270, 273
BlsI	GCNGC	8 cut(s)	110, 113, 166, 233, 251, 268, 271, 274
Bme1390I	CCNGG	1 cut(s)	521
Bme18I	GGWCC	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	1 cut(s)	521
BpmI	CTGGAG	1 cut(s)	503
BpuEI	CTTGAG	3 cut(s)	110, 464, 466
BsaJI	CCNNGG	2 cut(s)	152, 159
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	2 cut(s)	152, 159
BseMII	CTCAG	3 cut(s)	87, 309, 516
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	4 cut(s)	62, 305, 425, 428
BseXI	GCAGC	3 cut(s)	253, 256, 259
Bsh1236I	CGCG	2 cut(s)	116, 199
BshFI	GGCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	192
BsmAI	GTCTC	4 cut(s)	6, 74, 92, 611
BsmBI	CGTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	323
BsoBI	CYCGRG	1 cut(s)	592
Bsp1286I	GDGCHC	2 cut(s)	426, 599
Bsp143I	GATC	6 cut(s)	63, 121, 187, 329, 374, 472
BspACI	CCGC	9 cut(s)	9, 53, 108, 111, 164, 231, 249, 252, 261
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	3 cut(s)	88, 310, 517
BspFNI	CGCG	2 cut(s)	116, 199
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	616
BspPI	GGATC	2 cut(s)	129, 480
BspQI	GCTCTTC	1 cut(s)	98
BsrBI	CCGCTC	2 cut(s)	108, 231
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	152, 159
BssMI	GATC	6 cut(s)	63, 121, 187, 329, 374, 472
BssSI	CACGAG	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	1 cut(s)	315
Bst6I	CTCTTC	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	475
BstC8I	GCNNGC	2 cut(s)	143, 201
BstDEI	CTNAG	4 cut(s)	96, 318, 333, 525
BstFNI	CGCG	2 cut(s)	116, 199
BstHHI	GCGC	2 cut(s)	116, 236
BstKTI	GATC	6 cut(s)	66, 124, 190, 332, 377, 475
BstMAI	GTCTC	4 cut(s)	6, 74, 92, 611
BstMBI	GATC	6 cut(s)	63, 121, 187, 329, 374, 472
BstMWI	GCNNNNNNNGC	3 cut(s)	258, 272, 475
BstNI	CCWGG	1 cut(s)	521
BstSCI	CCNGG	1 cut(s)	519
BstUI	CGCG	2 cut(s)	116, 199
BstV1I	GCAGC	3 cut(s)	253, 256, 259
BstX2I	RGATCY	3 cut(s)	121, 329, 472
BstXI	CCANNNNNNTGG	1 cut(s)	225
BstYI	RGATCY	3 cut(s)	121, 329, 472
BsuRI	GGCC	1 cut(s)	323
Cac8I	GCNNGC	2 cut(s)	143, 201
CaiI	CAGNNNCTG	1 cut(s)	475
CciI	TCATGA	1 cut(s)	190
CfoI	GCGC	2 cut(s)	116, 236
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	156
CseI	GACGC	2 cut(s)	105, 134
CviAII	CATG	3 cut(s)	77, 191, 225
DdeI	CTNAG	4 cut(s)	96, 318, 333, 525
DpnI	GATC	6 cut(s)	65, 123, 189, 331, 376, 474
DpnII	GATC	6 cut(s)	63, 121, 187, 329, 374, 472
DraI	TTTAAA	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	2 cut(s)	24, 68
Eco130I	CCWWGG	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	599
Eco47I	GGWCC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	599
ErhI	CCWWGG	1 cut(s)	159
Esp3I	CGTCTC	1 cut(s)	92
FaeI	CATG	3 cut(s)	80, 194, 228
FaiI	YATR	7 cut(s)	32, 78, 192, 226, 467, 575, 612
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	3 cut(s)	76, 190, 224
Fnu4HI	GCNGC	8 cut(s)	109, 112, 165, 232, 250, 267, 270, 273
FriOI	GRGCYC	1 cut(s)	599
Fsp4HI	GCNGC	8 cut(s)	109, 112, 165, 232, 250, 267, 270, 273
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	2 cut(s)	115, 235
GluI	GCNGC	8 cut(s)	109, 112, 165, 232, 250, 267, 270, 273
GsuI	CTGGAG	1 cut(s)	503
HaeIII	GGCC	1 cut(s)	323
HapII	CCGG	1 cut(s)	6
HgaI	GACGC	2 cut(s)	105, 134
HhaI	GCGC	2 cut(s)	116, 236
Hin1II	CATG	3 cut(s)	80, 194, 228
Hin6I	GCGC	2 cut(s)	114, 234
HinP1I	GCGC	2 cut(s)	114, 234
HinfI	GANTC	6 cut(s)	19, 41, 293, 503, 527, 545
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	47
Hpy188I	TCNGA	3 cut(s)	63, 121, 319
Hpy188III	TCNNGA	6 cut(s)	23, 95, 191, 370, 378, 581
Hpy99I	CGWCG	2 cut(s)	121, 172
HpyAV	CCTTC	2 cut(s)	175, 562
HpyCH4III	ACNGT	1 cut(s)	315
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	1 cut(s)	469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	258, 272, 475
HpyF3I	CTNAG	4 cut(s)	96, 318, 333, 525
HpySE526I	ACGT	1 cut(s)	170
Hsp92II	CATG	3 cut(s)	80, 194, 228
HspAI	GCGC	2 cut(s)	114, 234
Kzo9I	GATC	6 cut(s)	63, 121, 187, 329, 374, 472
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	3 cut(s)	138, 228, 564
LpnPI	CCDG	8 cut(s)	19, 108, 455, 506, 533, 566, 576, 612
Lsp1109I	GCAGC	3 cut(s)	253, 256, 259
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	170
MaeIII	GTNAC	3 cut(s)	87, 352, 528
MalI	GATC	6 cut(s)	65, 123, 189, 331, 376, 474
MbiI	CCGCTC	2 cut(s)	108, 231
MboI	GATC	6 cut(s)	63, 121, 187, 329, 374, 472
MboII	GAAGA	2 cut(s)	115, 190
MflI	RGATCY	3 cut(s)	121, 329, 472
MhlI	GDGCHC	2 cut(s)	426, 599
MluI	ACGCGT	1 cut(s)	197
MlyI	GAGTC	3 cut(s)	302, 512, 536
MmeI	TCCRAC	1 cut(s)	99
MseI	TTAA	5 cut(s)	173, 405, 428, 509, 570
MslI	CAYNNNNRTG	1 cut(s)	223
MspA1I	CMGCKG	1 cut(s)	621
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	521
MvnI	CGCG	2 cut(s)	116, 199
MwoI	GCNNNNNNNGC	3 cut(s)	258, 272, 475
NdeII	GATC	6 cut(s)	63, 121, 187, 329, 374, 472
NlaIII	CATG	3 cut(s)	80, 194, 228
NlaIV	GGNNCC	1 cut(s)	616
NmeAIII	GCCGAG	2 cut(s)	106, 177
NmuCI	GTSAC	2 cut(s)	87, 528
PaeR7I	CTCGAG	1 cut(s)	592
PagI	TCATGA	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	98
PfeI	GAWTC	3 cut(s)	19, 41, 545
PkrI	GCNGC	8 cut(s)	110, 113, 166, 233, 251, 268, 271, 274
PleI	GAGTC	3 cut(s)	301, 511, 535
PpsI	GAGTC	3 cut(s)	301, 511, 535
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	1 cut(s)	616
PspPI	GGNCC	1 cut(s)	156
PspXI	VCTCGAGB	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	475
PsuI	RGATCY	3 cut(s)	121, 329, 472
PvuII	CAGCTG	1 cut(s)	621
RseI	CAYNNNNRTG	1 cut(s)	223
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	5 cut(s)	173, 405, 428, 509, 570
SatI	GCNGC	8 cut(s)	109, 112, 165, 232, 250, 267, 270, 273
Sau3AI	GATC	6 cut(s)	63, 121, 187, 329, 374, 472
Sau96I	GGNCC	1 cut(s)	156
SchI	GAGTC	3 cut(s)	302, 512, 536
ScrFI	CCNGG	1 cut(s)	521
SduI	GDGCHC	2 cut(s)	426, 599
SetI	ASST	6 cut(s)	132, 173, 242, 570, 580, 623
Sfr274I	CTCGAG	1 cut(s)	592
SinI	GGWCC	1 cut(s)	156
SlaI	CTCGAG	1 cut(s)	592
SmiMI	CAYNNNNRTG	1 cut(s)	223
SmlI	CTYRAG	4 cut(s)	125, 445, 479, 592
SmoI	CTYRAG	4 cut(s)	125, 445, 479, 592
SsiI	CCGC	9 cut(s)	9, 53, 108, 111, 164, 231, 249, 252, 261
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	519
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	315
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	593
TauI	GCSGC	5 cut(s)	111, 114, 167, 234, 252
TfiI	GAWTC	3 cut(s)	19, 41, 545
Tru1I	TTAA	5 cut(s)	173, 405, 428, 509, 570
Tru9I	TTAA	5 cut(s)	173, 405, 428, 509, 570
TseFI	GTSAC	2 cut(s)	87, 528
TseI	GCWGC	3 cut(s)	266, 269, 272
Tsp45I	GTSAC	2 cut(s)	87, 528
TspDTI	ATGAA	3 cut(s)	33, 213, 468
VpaK11BI	GGWCC	1 cut(s)	156
XhoI	CTCGAG	1 cut(s)	592
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.