Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006131

Physical Location & Seq

Genomic Coordinates Reverse (-)

26764558 .. 26769154

Gene Structure 4597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1219700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGACTTCCCCCGATGACAGTGACGGCGGCTGGGTCAACCTCGCCATGAACGACGAGGCGGCGGTCGTCGACCTTCTTCTCCGCCTCAAGCACTCCGCGCCGCCTCCGCCGTCGAAGCGCAGTAGTATTCACAGCTTTCCGACTTTGCGGTGGTGCGTAAGGCAGCGCCGCTCCAGGAACGTGCCACGTCGCCACCATGCCGACGACGTCGATGCTGAGGACAGAAAGAGCACGAAGGGTGAGTCGAGCGGCGCCAGGGCCAGCCCCACCACGCCACTTTCCTGGAGCGGTGCCACTTCGGCTGGCGGCGTCGACGGCTCCGAAGAGTCCAGCAAGCTGCTTAAGCCGACCGATGCCGCGAGATCTAAGGTTGCTGTTAGAAATGAATCAACCATCTTCAAGAGGCCAAGAAAGAAGAAGACTTTAGCTGAATTAAAAGAGGAGGAGAGTCTGCTGTTGAAGGAAAGAAGAAATTTGGAAAATGAATTGGCAACTCTACGCCTCACTGTTGAGAAGCAGAGGGCCACAAATGAAAGCTTGAAAAAAGTGAAGCTTGAGTTGCAGTTGCCGCAGACAAAAATGAAAGCTACAACACCTGTATTGTCTGGTGAAGCCATTTGGCACCAACATGAGCAAATAAATGCGGTTGGTGACACTACTCCAACAATGAAAACAAGTGTTCATTGCAATAACGTTGGCACTTCACAAAGCTCCTGTCCCTCAAATGTTTCTTCCAAGGTACAACAAGAGGTTGGGAGCCGAGACACTGCCTTTTCGCTACCTGATCTAAATCTTCCATTTGGGGAGGACCCTGGCTCCGAGGTTTTATATGGAACGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

30.69

Weight (kDa)

9.08

Isoelectric Point (pI)

57.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15800 AT1G80610
fragaria_vesca	FvH4_6g29000
malus_domestica	MD09G1223300.v1.1 MD17G1219700.v1.1
prunus_persica	Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1
pyrus_communis	pycom12419g00130 pycom17g22450
rosa_chinensis	RchiOBHm_Chr2g0133521
rosa_laevigata	RLG00000019351
rosa_multiflora	Rmu_co8487101.1_g000001 Rmu_sc0000924.1_g000058
rosa_roxburghii	Rroxscaffold_2G00111000
rosa_rugosa	Rorug02G0312600
rosa_samantha	Rh2AG365500 Rh2BG371100 Rh2CG348700 Rh2DG387900
rosa_wichuraiana	Rw0G005120 Rw2G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccB1I	GGYRCC	3 cut(s)	251, 290, 621
AccBSI	CCGCTC	3 cut(s)	171, 249, 288
AccI	GTMKAC	2 cut(s)	69, 312
AccII	CGCG	2 cut(s)	98, 359
AclI	AACGTT	1 cut(s)	693
AcsI	RAATTY	1 cut(s)	472
AcyI	GRCGYC	3 cut(s)	207, 252, 309
AfaI	GTAC	1 cut(s)	741
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	3 cut(s)	400, 460, 541
AjiI	CACGTC	1 cut(s)	188
AjnI	CCWGG	4 cut(s)	173, 254, 281, 811
AluBI	AGCT	8 cut(s)	135, 337, 428, 537, 553, 587, 711, 840
AluI	AGCT	8 cut(s)	135, 337, 428, 537, 553, 587, 711, 840
Alw21I	GWGCWC	1 cut(s)	233
Alw26I	GTCTC	1 cut(s)	756
AoxI	GGCC	3 cut(s)	258, 404, 522
ApeKI	GCWGC	2 cut(s)	163, 337
ApoI	RAATTY	1 cut(s)	472
ArsI	GACNNNNNNTTYG	4 cut(s)	227, 259, 700, 732
AspLEI	GCGC	4 cut(s)	100, 120, 168, 254
AspS9I	GGNCC	3 cut(s)	258, 522, 808
AsuHPI	GGTGA	3 cut(s)	251, 620, 662
AvaII	GGWCC	1 cut(s)	808
BanI	GGYRCC	3 cut(s)	251, 290, 621
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	233
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	175, 324
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	3 cut(s)	40, 94, 331
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	4 cut(s)	175, 256, 283, 813
BcoDI	GTCTC	1 cut(s)	756
BfoI	RGCGCY	2 cut(s)	169, 255
BfrI	CTTAAG	1 cut(s)	341
BglI	GCCNNNNNGGC	1 cut(s)	299
BglII	AGATCT	1 cut(s)	362
Bme1390I	CCNGG	4 cut(s)	175, 256, 283, 813
Bme18I	GGWCC	1 cut(s)	808
BmgBI	CACGTC	1 cut(s)	188
BmgT120I	GGNCC	3 cut(s)	258, 522, 808
BmiI	GGNNCC	7 cut(s)	253, 292, 319, 623, 758, 810, 817
BmrFI	CCNGG	4 cut(s)	175, 256, 283, 813
BmsI	GCATC	2 cut(s)	202, 343
BpiI	GAAGAC	1 cut(s)	425
BpmI	CTGGAG	2 cut(s)	157, 304
Bpu10I	CCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	2 cut(s)	71, 575
BsaBI	GATNNNNATC	1 cut(s)	789
BsaHI	GRCGYC	3 cut(s)	207, 252, 309
BsaJI	CCNNGG	4 cut(s)	255, 735, 811, 819
BsaXI	ACNNNNNCTCC	2 cut(s)	800, 830
Bse3DI	GCAATG	1 cut(s)	682
Bse8I	GATNNNNATC	1 cut(s)	789
BseBI	CCWGG	4 cut(s)	175, 256, 283, 813
BseDI	CCNNGG	4 cut(s)	255, 735, 811, 819
BseJI	GATNNNNATC	1 cut(s)	789
BseMI	GCAATG	1 cut(s)	682
BseMII	CTCAG	1 cut(s)	207
BseRI	GAGGAG	2 cut(s)	455, 458
BseXI	GCAGC	2 cut(s)	175, 324
BseYI	CCCAGC	1 cut(s)	30
Bsh1236I	CGCG	2 cut(s)	98, 359
Bsh1285I	CGRYCG	2 cut(s)	66, 351
BshFI	GGCC	3 cut(s)	260, 406, 524
BshNI	GGYRCC	3 cut(s)	251, 290, 621
BsiEI	CGRYCG	2 cut(s)	66, 351
BsiHKAI	GWGCWC	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	702
BsmAI	GTCTC	1 cut(s)	756
BsmFI	GGGAC	1 cut(s)	702
BsnI	GGCC	3 cut(s)	260, 406, 524
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	362, 784
BspANI	GGCC	3 cut(s)	260, 406, 524
BspCNI	CTCAG	1 cut(s)	208
BspFNI	CGCG	2 cut(s)	98, 359
BspLI	GGNNCC	7 cut(s)	253, 292, 319, 623, 758, 810, 817
BspT107I	GGYRCC	3 cut(s)	251, 290, 621
BspTI	CTTAAG	1 cut(s)	341
BsrBI	CCGCTC	3 cut(s)	171, 249, 288
BsrDI	GCAATG	1 cut(s)	682
BssECI	CCNNGG	4 cut(s)	255, 735, 811, 819
BssMI	GATC	2 cut(s)	362, 784
BssNI	GRCGYC	3 cut(s)	207, 252, 309
BssT1I	CCWWGG	1 cut(s)	735
Bst2UI	CCWGG	4 cut(s)	175, 256, 283, 813
Bst4CI	ACNGT	2 cut(s)	20, 508
Bst6I	CTCTTC	1 cut(s)	318
BstACI	GRCGYC	3 cut(s)	207, 252, 309
BstAFI	CTTAAG	1 cut(s)	341
BstC8I	GCNNGC	3 cut(s)	262, 304, 335
BstDEI	CTNAG	2 cut(s)	216, 366
BstFNI	CGCG	2 cut(s)	98, 359
BstH2I	RGCGCY	2 cut(s)	169, 255
BstHHI	GCGC	4 cut(s)	100, 120, 168, 254
BstKTI	GATC	2 cut(s)	365, 787
BstMAI	GTCTC	1 cut(s)	756
BstMBI	GATC	2 cut(s)	362, 784
BstMCI	CGRYCG	2 cut(s)	66, 351
BstMWI	GCNNNNNNNGC	8 cut(s)	97, 106, 115, 299, 315, 343, 559, 568
BstNI	CCWGG	4 cut(s)	175, 256, 283, 813
BstSCI	CCNGG	4 cut(s)	173, 254, 281, 811
BstUI	CGCG	2 cut(s)	98, 359
BstV1I	GCAGC	2 cut(s)	175, 324
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	1 cut(s)	362
BstXI	CCANNNNNNTGG	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	362
BsuRI	GGCC	3 cut(s)	260, 406, 524
BtrI	CACGTC	1 cut(s)	188
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	3 cut(s)	25, 504, 765
Cac8I	GCNNGC	3 cut(s)	262, 304, 335
CfoI	GCGC	4 cut(s)	100, 120, 168, 254
Cfr13I	GGNCC	3 cut(s)	258, 522, 808
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	740
CviAII	CATG	3 cut(s)	46, 197, 629
CviQI	GTAC	1 cut(s)	740
DdeI	CTNAG	2 cut(s)	216, 366
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	2 cut(s)	364, 786
DpnII	GATC	2 cut(s)	362, 784
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
EciI	GGCGGA	2 cut(s)	71, 96
Eco130I	CCWWGG	1 cut(s)	735
Eco47I	GGWCC	1 cut(s)	808
EcoO109I	RGGNCCY	1 cut(s)	808
EcoRII	CCWGG	4 cut(s)	173, 254, 281, 811
EcoT14I	CCWWGG	1 cut(s)	735
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	3 cut(s)	49, 200, 632
FaiI	YATR	5 cut(s)	47, 198, 630, 829, 831
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FaqI	GGGAC	1 cut(s)	702
FatI	CATG	3 cut(s)	45, 196, 628
FblI	GTMKAC	2 cut(s)	69, 312
GlaI	GCGC	4 cut(s)	99, 119, 167, 253
GsaI	CCCAGC	1 cut(s)	34
GsuI	CTGGAG	2 cut(s)	157, 304
HaeII	RGCGCY	2 cut(s)	169, 255
HaeIII	GGCC	3 cut(s)	260, 406, 524
HgaI	GACGC	1 cut(s)	298
HhaI	GCGC	4 cut(s)	100, 120, 168, 254
Hin1I	GRCGYC	3 cut(s)	207, 252, 309
Hin1II	CATG	3 cut(s)	49, 200, 632
Hin6I	GCGC	4 cut(s)	98, 118, 166, 252
HinP1I	GCGC	4 cut(s)	98, 118, 166, 252
HincII	GTYRAC	3 cut(s)	37, 70, 313
HindII	GTYRAC	3 cut(s)	37, 70, 313
HindIII	AAGCTT	2 cut(s)	535, 551
HinfI	GANTC	4 cut(s)	242, 326, 386, 448
HphI	GGTGA	3 cut(s)	251, 620, 662
Hpy166II	GTNNAC	3 cut(s)	37, 70, 313
Hpy188I	TCNGA	3 cut(s)	141, 322, 820
Hpy188III	TCNNGA	1 cut(s)	400
Hpy8I	GTNNAC	3 cut(s)	37, 70, 313
Hpy99I	CGWCG	9 cut(s)	56, 71, 115, 192, 206, 209, 212, 314, 317
HpyAV	CCTTC	3 cut(s)	83, 229, 454
HpyCH4III	ACNGT	2 cut(s)	20, 508
HpyCH4IV	ACGT	4 cut(s)	180, 187, 207, 693
HpyCH4V	TGCA	2 cut(s)	562, 687
HpyF10VI	GCNNNNNNNGC	8 cut(s)	97, 106, 115, 299, 315, 343, 559, 568
HpyF3I	CTNAG	2 cut(s)	216, 366
HpySE526I	ACGT	4 cut(s)	180, 187, 207, 693
Hsp92I	GRCGYC	3 cut(s)	207, 252, 309
Hsp92II	CATG	3 cut(s)	49, 200, 632
HspAI	GCGC	4 cut(s)	98, 118, 166, 252
KasI	GGCGCC	1 cut(s)	251
Kzo9I	GATC	2 cut(s)	362, 784
LmnI	GCTCC	6 cut(s)	176, 285, 323, 716, 756, 821
Lsp1109I	GCAGC	2 cut(s)	175, 324
LweI	GCATC	2 cut(s)	202, 343
MaeII	ACGT	4 cut(s)	180, 187, 207, 693
MaeIII	GTNAC	2 cut(s)	20, 650
MalI	GATC	2 cut(s)	364, 786
MbiI	CCGCTC	3 cut(s)	171, 249, 288
MboI	GATC	2 cut(s)	362, 784
MboII	GAAGA	8 cut(s)	68, 335, 388, 427, 430, 480, 723, 785
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	3 cut(s)	431, 472, 485
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	3 cut(s)	251, 335, 457
MmeI	TCCRAC	2 cut(s)	164, 686
MseI	TTAA	2 cut(s)	342, 434
MslI	CAYNNNNRTG	1 cut(s)	627
MspCI	CTTAAG	1 cut(s)	341
MspR9I	CCNGG	4 cut(s)	175, 256, 283, 813
MvaI	CCWGG	4 cut(s)	175, 256, 283, 813
MvnI	CGCG	2 cut(s)	98, 359
MwoI	GCNNNNNNNGC	8 cut(s)	97, 106, 115, 299, 315, 343, 559, 568
NarI	GGCGCC	1 cut(s)	252
NdeII	GATC	2 cut(s)	362, 784
NlaIII	CATG	3 cut(s)	49, 200, 632
NlaIV	GGNNCC	7 cut(s)	253, 292, 319, 623, 758, 810, 817
NmeAIII	GCCGAG	1 cut(s)	785
NmuCI	GTSAC	2 cut(s)	20, 650
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 318
PfeI	GAWTC	1 cut(s)	386
PflFI	GACNNNGTC	1 cut(s)	206
PfoI	TCCNGGA	2 cut(s)	173, 281
PleI	GAGTC	3 cut(s)	250, 334, 456
PluTI	GGCGCC	1 cut(s)	255
PpsI	GAGTC	3 cut(s)	250, 334, 456
PpuMI	RGGWCCY	1 cut(s)	808
Psp1406I	AACGTT	1 cut(s)	693
Psp5II	RGGWCCY	1 cut(s)	808
Psp6I	CCWGG	4 cut(s)	173, 254, 281, 811
PspFI	CCCAGC	1 cut(s)	30
PspGI	CCWGG	4 cut(s)	173, 254, 281, 811
PspN4I	GGNNCC	7 cut(s)	253, 292, 319, 623, 758, 810, 817
PspPI	GGNCC	3 cut(s)	258, 522, 808
PspPPI	RGGWCCY	1 cut(s)	808
PsuI	RGATCY	1 cut(s)	362
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	741
RsaNI	GTAC	1 cut(s)	740
RseI	CAYNNNNRTG	1 cut(s)	627
SalI	GTCGAC	2 cut(s)	68, 311
SaqAI	TTAA	2 cut(s)	342, 434
Sau3AI	GATC	2 cut(s)	362, 784
Sau96I	GGNCC	3 cut(s)	258, 522, 808
SchI	GAGTC	3 cut(s)	251, 335, 457
ScrFI	CCNGG	4 cut(s)	175, 256, 283, 813
SduI	GDGCHC	1 cut(s)	233
SfaNI	GCATC	2 cut(s)	202, 343
SfoI	GGCGCC	1 cut(s)	253
SgrDI	CGTCGACG	1 cut(s)	311
SinI	GGWCC	1 cut(s)	808
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	3 cut(s)	86, 341, 554
SmoI	CTYRAG	3 cut(s)	86, 341, 554
Sse9I	AATT	3 cut(s)	431, 472, 485
SspDI	GGCGCC	1 cut(s)	251
StyD4I	CCNGG	4 cut(s)	173, 254, 281, 811
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	2 cut(s)	20, 508
TaiI	ACGT	4 cut(s)	183, 190, 210, 696
TaqI	TCGA	5 cut(s)	69, 113, 210, 245, 312
TaqII	GACCGA	1 cut(s)	365
TasI	AATT	3 cut(s)	431, 472, 485
TauI	GCSGC	8 cut(s)	30, 62, 103, 171, 252, 309, 359, 571
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	2 cut(s)	342, 434
Tru9I	TTAA	2 cut(s)	342, 434
TscAI	CASTG	3 cut(s)	25, 511, 772
TseFI	GTSAC	2 cut(s)	20, 650
TseI	GCWGC	2 cut(s)	163, 337
Tsp45I	GTSAC	2 cut(s)	20, 650
TspDTI	ATGAA	7 cut(s)	62, 399, 498, 546, 596, 671, 683
TspRI	CASTG	3 cut(s)	25, 511, 772
Tth111I	GACNNNGTC	1 cut(s)	206
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	808
XapI	RAATTY	1 cut(s)	472
XmiI	GTMKAC	2 cut(s)	69, 312
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.