Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006131

Physical Location & Seq

Genomic Coordinates Forward (+)

48241051 .. 48245891

Gene Structure 4841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G029770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAAAGACGACGTGGCGGTCGTCGGCGTTCTACTCGACATCAGACACGCCGAGCCGCCGCCGCCGCCACCGTCGATGTTCAAGTCTCCAGCTTTGAAGCTCGGGTGGAGTGTGCGGCAGAGGCGCTCCAAGCACGTGCCGCGCCACCCCACCAGCGACGTCGTTGTTGACGTCAAAAAGAAGAAGAAGGCGGCGGAGGAGTCGACCAGAGCCAGCCCCACCACGCCGCTCTCCTGGAGCGGCGCCACTTCGGTCAGCGGCGGCGGTGCCTCCGAAGAGTCCAGCAAGCCGCCTGAGCCGACCGACGCCGCGAGATCTAAGGTTGCTGTTACAAGTTGCACGACCATCTCCAAGAGGCCGAGAAAGAGGAAGACCTTAGCTCAACTTAAAGAGGAGGAGAGTCTTCTATTGAAGGAAAGACGCAATTTGAAAAAGGAACTGCTAAACCTACGCCTCAATGTCGAGAAGCAGAGGGCCACAAATGAAAGCTTGAAAAGAATAAAGCTGCAGCAAACAATGATGAAAGTTGCCTCTTCCTCTGCATCGGGTGAAGCCATTTCTTATCAACCAGCACAAGTAAATGTAGTTAGTGAACTTACTAGAATCATTGATCTTGGCACTTCACAGAGTTCCTGTCCATCCAACATTTCTTGCATGGTACACGAAGTTGAGAACTGCCATGAAGCTGCCTTTCCACTACCGGATCTAAATCTTCCATTTCAAGATGATCACAACTCCGAGGCTTTATGTGGAATGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

27.68

Weight (kDa)

9.38

Isoelectric Point (pI)

69.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15800 AT1G80610
fragaria_vesca	FvH4_6g29000
malus_domestica	MD09G1223300.v1.1 MD17G1219700.v1.1
prunus_persica	Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1
pyrus_communis	pycom12419g00130 pycom17g22450
rosa_chinensis	RchiOBHm_Chr2g0133521
rosa_laevigata	RLG00000019351
rosa_multiflora	Rmu_co8487101.1_g000001 Rmu_sc0000924.1_g000058
rosa_roxburghii	Rroxscaffold_2G00111000
rosa_rugosa	Rorug02G0312600
rosa_samantha	Rh2AG365500 Rh2BG371100 Rh2CG348700 Rh2DG387900
rosa_wichuraiana	Rw0G005120 Rw2G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	2 cut(s)	162, 174
AccB1I	GGYRCC	2 cut(s)	242, 266
AccBSI	CCGCTC	2 cut(s)	229, 240
AccI	GTMKAC	1 cut(s)	203
AccII	CGCG	2 cut(s)	142, 311
AclWI	GGATC	1 cut(s)	711
AcvI	CACGTG	1 cut(s)	136
AcyI	GRCGYC	4 cut(s)	159, 171, 243, 306
AfaI	GTAC	1 cut(s)	660
AgsI	TTSAA	6 cut(s)	82, 97, 412, 430, 493, 722
AjiI	CACGTC	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	7 cut(s)	92, 100, 380, 489, 505, 686, 759
AluI	AGCT	7 cut(s)	92, 100, 380, 489, 505, 686, 759
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	711
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	2 cut(s)	356, 474
ApeKI	GCWGC	3 cut(s)	505, 508, 686
AspLEI	GCGC	3 cut(s)	126, 144, 245
AspS9I	GGNCC	1 cut(s)	474
AsuHPI	GGTGA	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	101
BanI	GGYRCC	2 cut(s)	242, 266
BbrPI	CACGTG	1 cut(s)	136
BbsI	GAAGAC	2 cut(s)	377, 395
BbvI	GCAGC	3 cut(s)	492, 520, 673
BccI	CCATC	2 cut(s)	353, 646
BciT130I	CCWGG	1 cut(s)	235
BclI	TGATCA	1 cut(s)	727
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	1 cut(s)	506
BfoI	RGCGCY	2 cut(s)	127, 246
BglII	AGATCT	1 cut(s)	314
Bme1390I	CCNGG	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	101
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	474
BmiI	GGNNCC	2 cut(s)	244, 268
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	551
BpiI	GAAGAC	2 cut(s)	377, 395
BpmI	CTGGAG	2 cut(s)	72, 256
Bpu10I	CCTNAGC	2 cut(s)	294, 376
BsaAI	YACGTR	1 cut(s)	136
BsaBI	GATNNNNATC	1 cut(s)	708
BsaHI	GRCGYC	4 cut(s)	159, 171, 243, 306
BsaJI	CCNNGG	1 cut(s)	738
BsaWI	WCCGGW	1 cut(s)	700
Bse8I	GATNNNNATC	1 cut(s)	708
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	738
BseGI	GGATG	1 cut(s)	638
BseJI	GATNNNNATC	1 cut(s)	708
BseMII	CTCAG	1 cut(s)	285
BseRI	GAGGAG	3 cut(s)	212, 407, 410
BseXI	GCAGC	3 cut(s)	492, 520, 673
Bsh1236I	CGCG	2 cut(s)	142, 311
Bsh1285I	CGRYCG	2 cut(s)	21, 303
BshFI	GGCC	2 cut(s)	358, 476
BshNI	GGYRCC	2 cut(s)	242, 266
BsiEI	CGRYCG	2 cut(s)	21, 303
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	701
BsmAI	GTCTC	1 cut(s)	90
BsnI	GGCC	2 cut(s)	358, 476
BsoBI	CYCGRG	1 cut(s)	101
Bsp143I	GATC	4 cut(s)	314, 610, 703, 727
BspANI	GGCC	2 cut(s)	358, 476
BspCNI	CTCAG	1 cut(s)	286
BspFNI	CGCG	2 cut(s)	142, 311
BspLI	GGNNCC	2 cut(s)	244, 268
BspMAI	CTGCAG	1 cut(s)	510
BspPI	GGATC	1 cut(s)	711
BspT107I	GGYRCC	2 cut(s)	242, 266
BsrBI	CCGCTC	2 cut(s)	229, 240
BssECI	CCNNGG	1 cut(s)	738
BssMI	GATC	4 cut(s)	314, 610, 703, 727
BssNI	GRCGYC	4 cut(s)	159, 171, 243, 306
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	2 cut(s)	270, 538
BstACI	GRCGYC	4 cut(s)	159, 171, 243, 306
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	2 cut(s)	214, 287
BstDEI	CTNAG	3 cut(s)	294, 318, 376
BstF5I	GGATG	1 cut(s)	638
BstFNI	CGCG	2 cut(s)	142, 311
BstH2I	RGCGCY	2 cut(s)	127, 246
BstHHI	GCGC	3 cut(s)	126, 144, 245
BstKTI	GATC	4 cut(s)	317, 613, 706, 730
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	4 cut(s)	314, 610, 703, 727
BstMCI	CGRYCG	2 cut(s)	21, 303
BstMWI	GCNNNNNNNGC	6 cut(s)	61, 64, 121, 130, 139, 295
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	506
BstUI	CGCG	2 cut(s)	142, 311
BstV1I	GCAGC	3 cut(s)	492, 520, 673
BstV2I	GAAGAC	2 cut(s)	377, 395
BstX2I	RGATCY	2 cut(s)	314, 703
BstYI	RGATCY	2 cut(s)	314, 703
BsuRI	GGCC	2 cut(s)	358, 476
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	638
Cac8I	GCNNGC	2 cut(s)	214, 287
CfoI	GCGC	3 cut(s)	126, 144, 245
Cfr13I	GGNCC	1 cut(s)	474
CseI	GACGC	2 cut(s)	314, 429
Csp6I	GTAC	1 cut(s)	659
CviAII	CATG	2 cut(s)	655, 680
CviQI	GTAC	1 cut(s)	659
DdeI	CTNAG	3 cut(s)	294, 318, 376
DinI	GGCGCC	1 cut(s)	244
DpnI	GATC	4 cut(s)	316, 612, 705, 729
DpnII	GATC	4 cut(s)	314, 610, 703, 727
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	270, 538
EarI	CTCTTC	2 cut(s)	270, 538
EciI	GGCGGA	1 cut(s)	209
Eco72I	CACGTG	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	233
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
FaeI	CATG	2 cut(s)	658, 683
FaiI	YATR	3 cut(s)	656, 681, 748
FatI	CATG	2 cut(s)	654, 679
FbaI	TGATCA	1 cut(s)	727
FblI	GTMKAC	1 cut(s)	203
FokI	GGATG	1 cut(s)	625
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	3 cut(s)	125, 143, 244
GsuI	CTGGAG	2 cut(s)	72, 256
HaeII	RGCGCY	2 cut(s)	127, 246
HaeIII	GGCC	2 cut(s)	358, 476
HapII	CCGG	1 cut(s)	701
HgaI	GACGC	2 cut(s)	314, 429
HhaI	GCGC	3 cut(s)	126, 144, 245
Hin1I	GRCGYC	4 cut(s)	159, 171, 243, 306
Hin1II	CATG	2 cut(s)	658, 683
Hin6I	GCGC	3 cut(s)	124, 142, 243
HinP1I	GCGC	3 cut(s)	124, 142, 243
HincII	GTYRAC	2 cut(s)	169, 204
HindII	GTYRAC	2 cut(s)	169, 204
HindIII	AAGCTT	1 cut(s)	487
HinfI	GANTC	4 cut(s)	200, 278, 400, 603
HpaII	CCGG	1 cut(s)	701
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	4 cut(s)	169, 204, 593, 661
Hpy188I	TCNGA	3 cut(s)	44, 274, 739
Hpy188III	TCNNGA	2 cut(s)	463, 722
Hpy8I	GTNNAC	4 cut(s)	169, 204, 593, 661
Hpy99I	CGWCG	6 cut(s)	14, 26, 76, 161, 164, 308
HpyAV	CCTTC	2 cut(s)	181, 406
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	4 cut(s)	12, 135, 159, 171
HpyCH4V	TGCA	4 cut(s)	339, 508, 542, 654
HpyF10VI	GCNNNNNNNGC	6 cut(s)	61, 64, 121, 130, 139, 295
HpyF3I	CTNAG	3 cut(s)	294, 318, 376
HpySE526I	ACGT	4 cut(s)	12, 135, 159, 171
Hsp92I	GRCGYC	4 cut(s)	159, 171, 243, 306
Hsp92II	CATG	2 cut(s)	658, 683
HspAI	GCGC	3 cut(s)	124, 142, 243
KasI	GGCGCC	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	727
Kzo9I	GATC	4 cut(s)	314, 610, 703, 727
LmnI	GCTCC	2 cut(s)	131, 237
Lsp1109I	GCAGC	3 cut(s)	492, 520, 673
LweI	GCATC	1 cut(s)	551
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	4 cut(s)	12, 135, 159, 171
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	4 cut(s)	316, 612, 705, 729
MbiI	CCGCTC	2 cut(s)	229, 240
MboI	GATC	4 cut(s)	314, 610, 703, 727
MboII	GAAGA	7 cut(s)	193, 196, 287, 382, 395, 525, 704
MflI	RGATCY	2 cut(s)	314, 703
MluCI	AATT	1 cut(s)	424
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	3 cut(s)	209, 287, 409
MmeI	TCCRAC	1 cut(s)	666
MseI	TTAA	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	1 cut(s)	701
MspR9I	CCNGG	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	235
MvnI	CGCG	2 cut(s)	142, 311
MwoI	GCNNNNNNNGC	6 cut(s)	61, 64, 121, 130, 139, 295
NarI	GGCGCC	1 cut(s)	243
NdeII	GATC	4 cut(s)	314, 610, 703, 727
NlaIII	CATG	2 cut(s)	658, 683
NlaIV	GGNNCC	2 cut(s)	244, 268
NmeAIII	GCCGAG	2 cut(s)	76, 384
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 168
PfeI	GAWTC	1 cut(s)	603
PfoI	TCCNGGA	1 cut(s)	233
PleI	GAGTC	3 cut(s)	208, 286, 408
PluTI	GGCGCC	1 cut(s)	246
PmaCI	CACGTG	1 cut(s)	136
PmlI	CACGTG	1 cut(s)	136
PpsI	GAGTC	3 cut(s)	208, 286, 408
Ppu21I	YACGTR	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	233
PspCI	CACGTG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	2 cut(s)	244, 268
PspPI	GGNCC	1 cut(s)	474
PstI	CTGCAG	1 cut(s)	510
PsuI	RGATCY	2 cut(s)	314, 703
RsaI	GTAC	1 cut(s)	660
RsaNI	GTAC	1 cut(s)	659
SalI	GTCGAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	387
Sau3AI	GATC	4 cut(s)	314, 610, 703, 727
Sau96I	GGNCC	1 cut(s)	474
SchI	GAGTC	3 cut(s)	209, 287, 409
ScrFI	CCNGG	1 cut(s)	235
SfaNI	GCATC	1 cut(s)	551
SfcI	CTRYAG	1 cut(s)	506
SfoI	GGCGCC	1 cut(s)	244
Sse9I	AATT	1 cut(s)	424
SspDI	GGCGCC	1 cut(s)	242
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	233
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	4 cut(s)	15, 138, 162, 174
TaqI	TCGA	4 cut(s)	36, 74, 203, 462
TaqII	GACCGA	2 cut(s)	241, 317
TasI	AATT	1 cut(s)	424
TfiI	GAWTC	1 cut(s)	603
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TseI	GCWGC	3 cut(s)	505, 508, 686
TspDTI	ATGAA	4 cut(s)	17, 498, 536, 696
XmiI	GTMKAC	1 cut(s)	203
XspI	CTAG	1 cut(s)	600
ZraI	GACGTC	2 cut(s)	160, 172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.