Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006131

Physical Location & Seq

Genomic Coordinates Forward (+)

22370501 .. 22375534

Gene Structure 5034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGATGGCTGCAGCGCCACCCACCGAGGACGTCGACGATTGGGTCAAACTGGCCATGAAAGACGACGTGGCGGTCGTCGGTGTTCTTCTTGATATCAGACACGCCGAGCCGCCACCGCTGATGCTCCATGGCGCCTCTCCGGCACTGAAGCTCGAGTGGAGCGTGCGGCAGAGGCGCTCCAAGCACGTGCCACGGCAACAAAGCGACGTTGTTGACGTCAAAAAGAAGAAGAAAGCGGAGGAGTCGACCAGAGCCAGCCCCACCACGCCGCTCTCCTGGAGCGGCGCCACTTCGGTCAGCGGCGGCGAAGAGTCCAGCATGCCGCGTAAGCCGGCCAACGCCGCGAGATCTAAGGTTGCTGTGACGAGTTGCGCAACCATCTCCAAGAGGCCAAGAAAGAGGAAGACATTAGCTCAACTTAAAGAGGAGGAATGTCTTCTGTTGAAGGAAAGACGCAATCTGAAAAAGGAACTACAAACACTACGCCTCAATGTCGAGAAGCAGAGGGCCACAAATGAAAGCTTGAAAAAAATAAAGCTGCAGCAAACAATGATGAAAGTTGCATCTTCTTCTGCATCGGGTGAAGGCATTTGTTATCAACCCACACAAGTAAATGCAGTTAGTGAACTTGCTAGAGTCATTGATCTTGGCACTTCAAAGAGTTCCTGTCCATCCAACATTTCTAATATGGTACATGAAGTTGGGAACTGCCGAGAAGCTGCCTTTCCACTACCCGATCTAAATCTTCCATTTGAAGACAATCAGAACCCCGAGGCTTTATATGGTATCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

29.02

Weight (kDa)

9.41

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15800 AT1G80610
fragaria_vesca	FvH4_6g29000
malus_domestica	MD09G1223300.v1.1 MD17G1219700.v1.1
prunus_persica	Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1
pyrus_communis	pycom12419g00130 pycom17g22450
rosa_chinensis	RchiOBHm_Chr2g0133521
rosa_laevigata	RLG00000019351
rosa_multiflora	Rmu_co8487101.1_g000001 Rmu_sc0000924.1_g000058
rosa_roxburghii	Rroxscaffold_2G00111000
rosa_rugosa	Rorug02G0312600
rosa_samantha	Rh2AG365500 Rh2BG371100 Rh2CG348700 Rh2DG387900
rosa_wichuraiana	Rw0G005120 Rw2G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	41, 71
AatII	GACGTC	2 cut(s)	33, 219
Acc16I	TGCGCA	1 cut(s)	373
AccB1I	GGYRCC	2 cut(s)	131, 284
AccBSI	CCGCTC	2 cut(s)	271, 282
AccI	GTMKAC	2 cut(s)	33, 245
AccII	CGCG	2 cut(s)	325, 344
AcoI	YGGCCR	2 cut(s)	51, 333
AcuI	CTGAAG	1 cut(s)	167
AcvI	CACGTG	1 cut(s)	187
AcyI	GRCGYC	4 cut(s)	30, 132, 216, 285
AfaI	GTAC	1 cut(s)	693
AgsI	TTSAA	4 cut(s)	445, 526, 657, 755
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	275
AluBI	AGCT	6 cut(s)	151, 413, 522, 538, 719, 792
AluI	AGCT	6 cut(s)	151, 413, 522, 538, 719, 792
Ama87I	CYCGRG	2 cut(s)	152, 770
AoxI	GGCC	4 cut(s)	51, 333, 389, 507
ApeKI	GCWGC	5 cut(s)	8, 11, 538, 541, 719
Asp700I	GAANNNNTTC	1 cut(s)	435
AspLEI	GCGC	5 cut(s)	16, 134, 177, 287, 374
AspS9I	GGNCC	1 cut(s)	507
AsuHPI	GGTGA	1 cut(s)	593
AvaI	CYCGRG	2 cut(s)	152, 770
BalI	TGGCCA	1 cut(s)	53
BanI	GGYRCC	2 cut(s)	131, 284
BbrPI	CACGTG	1 cut(s)	187
BbsI	GAAGAC	3 cut(s)	410, 428, 762
BbvI	GCAGC	4 cut(s)	23, 525, 553, 706
BccI	CCATC	2 cut(s)	386, 679
BceAI	ACGGC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	277
BfaI	CTAG	1 cut(s)	633
BfmI	CTRYAG	2 cut(s)	9, 539
BfoI	RGCGCY	4 cut(s)	17, 135, 178, 288
BglI	GCCNNNNNGGC	1 cut(s)	140
BglII	AGATCT	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	277
BmeT110I	CYCGRG	2 cut(s)	152, 770
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	507
BmiI	GGNNCC	2 cut(s)	133, 286
BmrFI	CCNGG	1 cut(s)	277
BmsI	GCATC	3 cut(s)	111, 572, 584
BpiI	GAAGAC	3 cut(s)	410, 428, 762
BpmI	CTGGAG	1 cut(s)	298
BsaAI	YACGTR	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	741
BsaHI	GRCGYC	4 cut(s)	30, 132, 216, 285
BsaJI	CCNNGG	4 cut(s)	24, 127, 191, 771
Bse118I	RCCGGY	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	741
BseBI	CCWGG	1 cut(s)	277
BseDI	CCNNGG	4 cut(s)	24, 127, 191, 771
BseGI	GGATG	1 cut(s)	671
BseJI	GATNNNNATC	1 cut(s)	741
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	2 cut(s)	254, 440
BseXI	GCAGC	4 cut(s)	23, 525, 553, 706
Bsh1236I	CGCG	2 cut(s)	325, 344
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	4 cut(s)	53, 335, 391, 509
BshNI	GGYRCC	2 cut(s)	131, 284
BsiEI	CGRYCG	1 cut(s)	75
BsiHKCI	CYCGRG	2 cut(s)	152, 770
BsiSI	CCGG	2 cut(s)	140, 332
BsnI	GGCC	4 cut(s)	53, 335, 391, 509
BsoBI	CYCGRG	2 cut(s)	152, 770
Bsp143I	GATC	3 cut(s)	347, 643, 736
Bsp19I	CCATGG	1 cut(s)	127
BspANI	GGCC	4 cut(s)	53, 335, 391, 509
BspFNI	CGCG	2 cut(s)	325, 344
BspLI	GGNNCC	2 cut(s)	133, 286
BspMAI	CTGCAG	2 cut(s)	13, 543
BspT107I	GGYRCC	2 cut(s)	131, 284
BsrBI	CCGCTC	2 cut(s)	271, 282
BsrFI	RCCGGY	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	54
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	4 cut(s)	24, 127, 191, 771
BssMI	GATC	3 cut(s)	347, 643, 736
BssNI	GRCGYC	4 cut(s)	30, 132, 216, 285
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	303
BstACI	GRCGYC	4 cut(s)	30, 132, 216, 285
BstBAI	YACGTR	1 cut(s)	187
BstC8I	GCNNGC	4 cut(s)	164, 256, 320, 333
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	2 cut(s)	127, 191
BstF5I	GGATG	1 cut(s)	671
BstFNI	CGCG	2 cut(s)	325, 344
BstH2I	RGCGCY	4 cut(s)	17, 135, 178, 288
BstHHI	GCGC	5 cut(s)	16, 134, 177, 287, 374
BstKTI	GATC	3 cut(s)	350, 646, 739
BstMBI	GATC	3 cut(s)	347, 643, 736
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	6 cut(s)	115, 140, 172, 181, 328, 341
BstNI	CCWGG	1 cut(s)	277
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	275
BstSFI	CTRYAG	2 cut(s)	9, 539
BstUI	CGCG	2 cut(s)	325, 344
BstV1I	GCAGC	4 cut(s)	23, 525, 553, 706
BstV2I	GAAGAC	3 cut(s)	410, 428, 762
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	4 cut(s)	53, 335, 391, 509
BtgI	CCRYGG	2 cut(s)	127, 191
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	671
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	4 cut(s)	164, 256, 320, 333
CfoI	GCGC	5 cut(s)	16, 134, 177, 287, 374
Cfr10I	RCCGGY	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	507
CseI	GACGC	1 cut(s)	462
Csp6I	GTAC	1 cut(s)	692
CviAII	CATG	4 cut(s)	55, 128, 319, 695
CviQI	GTAC	1 cut(s)	692
DdeI	CTNAG	1 cut(s)	351
DinI	GGCGCC	2 cut(s)	133, 286
DpnI	GATC	3 cut(s)	349, 645, 738
DpnII	GATC	3 cut(s)	347, 643, 736
DrdI	GACNNNNNNGTC	2 cut(s)	41, 71
DseDI	GACNNNNNNGTC	2 cut(s)	41, 71
EaeI	YGGCCR	2 cut(s)	51, 333
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	127
Eco32I	GATATC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	167
Eco72I	CACGTG	1 cut(s)	187
Eco88I	CYCGRG	2 cut(s)	152, 770
EcoRII	CCWGG	1 cut(s)	275
EcoRV	GATATC	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	127
EgeI	GGCGCC	2 cut(s)	133, 286
EheI	GGCGCC	2 cut(s)	133, 286
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	4 cut(s)	58, 131, 322, 698
FaiI	YATR	7 cut(s)	56, 129, 320, 689, 696, 781, 783
FatI	CATG	4 cut(s)	54, 127, 318, 694
FblI	GTMKAC	2 cut(s)	33, 245
FokI	GGATG	1 cut(s)	658
FspBI	CTAG	1 cut(s)	633
FspI	TGCGCA	1 cut(s)	373
GlaI	GCGC	5 cut(s)	15, 133, 176, 286, 373
GsuI	CTGGAG	1 cut(s)	298
HaeII	RGCGCY	4 cut(s)	17, 135, 178, 288
HaeIII	GGCC	4 cut(s)	53, 335, 391, 509
HapII	CCGG	2 cut(s)	140, 332
HgaI	GACGC	1 cut(s)	462
HhaI	GCGC	5 cut(s)	16, 134, 177, 287, 374
Hin1I	GRCGYC	4 cut(s)	30, 132, 216, 285
Hin1II	CATG	4 cut(s)	58, 131, 322, 698
Hin6I	GCGC	5 cut(s)	14, 132, 175, 285, 372
HinP1I	GCGC	5 cut(s)	14, 132, 175, 285, 372
HincII	GTYRAC	3 cut(s)	34, 214, 246
HindII	GTYRAC	3 cut(s)	34, 214, 246
HindIII	AAGCTT	1 cut(s)	520
HinfI	GANTC	3 cut(s)	242, 311, 636
HpaII	CCGG	2 cut(s)	140, 332
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	4 cut(s)	34, 214, 246, 626
Hpy188I	TCNGA	3 cut(s)	98, 462, 765
Hpy188III	TCNNGA	2 cut(s)	89, 496
Hpy8I	GTNNAC	4 cut(s)	34, 214, 246, 626
Hpy99I	CGWCG	5 cut(s)	35, 38, 68, 80, 209
HpyAV	CCTTC	2 cut(s)	439, 578
HpyCH4IV	ACGT	5 cut(s)	30, 66, 186, 207, 216
HpyCH4V	TGCA	5 cut(s)	11, 541, 563, 575, 617
HpyF10VI	GCNNNNNNNGC	6 cut(s)	115, 140, 172, 181, 328, 341
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	5 cut(s)	30, 66, 186, 207, 216
Hsp92I	GRCGYC	4 cut(s)	30, 132, 216, 285
Hsp92II	CATG	4 cut(s)	58, 131, 322, 698
HspAI	GCGC	5 cut(s)	14, 132, 175, 285, 372
KasI	GGCGCC	2 cut(s)	131, 284
KroI	GCCGGC	1 cut(s)	331
KroNI	GCCGGC	1 cut(s)	333
Kzo9I	GATC	3 cut(s)	347, 643, 736
LmnI	GCTCC	4 cut(s)	129, 159, 182, 279
LpnPI	CCDG	9 cut(s)	35, 153, 262, 262, 268, 289, 328, 345, 679
Lsp1109I	GCAGC	4 cut(s)	23, 525, 553, 706
LweI	GCATC	3 cut(s)	111, 572, 584
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	5 cut(s)	30, 66, 186, 207, 216
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	3 cut(s)	349, 645, 738
MbiI	CCGCTC	2 cut(s)	271, 282
MboI	GATC	3 cut(s)	347, 643, 736
MflI	RGATCY	1 cut(s)	347
MlsI	TGGCCA	1 cut(s)	53
MluNI	TGGCCA	1 cut(s)	53
Mly113I	GGCGCC	2 cut(s)	132, 285
MlyI	GAGTC	3 cut(s)	251, 320, 645
MmeI	TCCRAC	1 cut(s)	699
Mox20I	TGGCCA	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	331
MroXI	GAANNNNTTC	1 cut(s)	435
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	3 cut(s)	118, 300, 792
MspI	CCGG	2 cut(s)	140, 332
MspR9I	CCNGG	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	277
MvnI	CGCG	2 cut(s)	325, 344
MwoI	GCNNNNNNNGC	6 cut(s)	115, 140, 172, 181, 328, 341
NaeI	GCCGGC	1 cut(s)	333
NarI	GGCGCC	2 cut(s)	132, 285
NcoI	CCATGG	1 cut(s)	127
NdeII	GATC	3 cut(s)	347, 643, 736
NgoMIV	GCCGGC	1 cut(s)	331
NlaIII	CATG	4 cut(s)	58, 131, 322, 698
NlaIV	GGNNCC	2 cut(s)	133, 286
NmeAIII	GCCGAG	2 cut(s)	130, 737
NmuCI	GTSAC	1 cut(s)	361
NsbI	TGCGCA	1 cut(s)	373
NspI	RCATGY	1 cut(s)	322
PaeI	GCATGC	1 cut(s)	322
PaeR7I	CTCGAG	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	3 cut(s)	72, 159, 213
PdiI	GCCGGC	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	435
PfoI	TCCNGGA	1 cut(s)	275
PleI	GAGTC	3 cut(s)	250, 319, 644
PluTI	GGCGCC	2 cut(s)	135, 288
PmaCI	CACGTG	1 cut(s)	187
PmlI	CACGTG	1 cut(s)	187
PpsI	GAGTC	3 cut(s)	250, 319, 644
Ppu21I	YACGTR	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	275
PspCI	CACGTG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	2 cut(s)	133, 286
PspPI	GGNCC	1 cut(s)	507
PspXI	VCTCGAGB	1 cut(s)	152
PstI	CTGCAG	2 cut(s)	13, 543
PsuI	RGATCY	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	792
RsaI	GTAC	1 cut(s)	693
RsaNI	GTAC	1 cut(s)	692
SalI	GTCGAC	2 cut(s)	32, 244
SaqAI	TTAA	1 cut(s)	420
Sau3AI	GATC	3 cut(s)	347, 643, 736
Sau96I	GGNCC	1 cut(s)	507
SchI	GAGTC	3 cut(s)	251, 320, 645
ScrFI	CCNGG	1 cut(s)	277
SfaNI	GCATC	3 cut(s)	111, 572, 584
SfcI	CTRYAG	2 cut(s)	9, 539
SfoI	GGCGCC	2 cut(s)	133, 286
Sfr274I	CTCGAG	1 cut(s)	152
SgrDI	CGTCGACG	1 cut(s)	32
SlaI	CTCGAG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SphI	GCATGC	1 cut(s)	322
SspDI	GGCGCC	2 cut(s)	131, 284
SspMI	CTAG	1 cut(s)	633
StyD4I	CCNGG	1 cut(s)	275
StyI	CCWWGG	1 cut(s)	127
TaiI	ACGT	5 cut(s)	33, 69, 189, 210, 219
TaqI	TCGA	4 cut(s)	33, 153, 245, 495
TaqII	GACCGA	1 cut(s)	283
TauI	GCSGC	8 cut(s)	112, 169, 271, 285, 303, 306, 325, 344
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	5 cut(s)	8, 11, 538, 541, 719
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	4 cut(s)	71, 531, 569, 711
TspRI	CASTG	1 cut(s)	150
XceI	RCATGY	1 cut(s)	322
XhoI	CTCGAG	1 cut(s)	152
XmiI	GTMKAC	2 cut(s)	33, 245
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	1 cut(s)	633
ZraI	GACGTC	2 cut(s)	31, 217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.