Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012419

Orthogroup ID

OG0006131

Physical Location & Seq

Genomic Coordinates Forward (+)

207014 .. 212325

Gene Structure 5312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12419g00130.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGCCACATCTTCTACATCTTCCCCAATTCTTAGTCCTCACTCACCTCCGGCCACTAGCGCGTCTACCCCACACACCTCAACCAATCTACACCTACAAACCCTATCTAAATAAATTAGTGTCATACATCAAAACCATTAACAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAGCCACGCAAAGTTGGTCAAGAACTATATATATATGTTTATGTTCTTTCCTCCTTTTCATCTTTCTGCGCACACAAACAAACCCGCATAAAATTGAAAAAGATTTTCTTTCTCCCCCTTCTCTCTATCCCCACCCTCTTCTTCTTCTTCCTCTCTCTCTCTGCAAAAACCCAGAGAAGCAAAAAACCGACAGTGACAACACTATGAGTTCCCCTGCTGACGACGGTCAAGACGGCTGGGTCAAGCTCGCCATGAACGACGAGGTGGCGGTCGTCGATCTTCTTCTCCGCCTCAAGCACGCCGCGCCGCCTCCGCCGTCGAAGCGCAGTAGTACTCACGGCTTTCCGACTTTGCGGTGGAGCGTAAGGCAGCGCCGTTCCAGGAACGTGCCACGTAACCATCATGCCGACGACGTCGCTGCTGAGGGAAGAAAGAGCAACAAGGGTGAGTCGAGCGGCGCCAGGGCCAGCCCCACCACGCCTCTTTCCTGGAGCGGGGCCACTTCGGTTAGCGGCGGCGGTGGCTGCGTCGACGGTTCAGAAGAATCCAGCAAGCCGCTTAAGCCGACCGATACCGCGAGATCTAAGGTTGCTGTTAGAAGTGAATTAACCATCTTCAAGAGGCCAAGAAAGAAGAAGACGTTAGCTGAATTAAAAGAGGAGGAGAGTCTGCTGTTGAAGGAAAGAAGAAATTTGAAAAATGAATTGGCAGTGCTATGCCTCACTGTTGAGAAGCAAAGGGCCACAAATGAAAGCTTGAAAAAAGTGAAGCTTGAGTTGCAATTGCCGCAGACAAAAATGAAAGCTACGACACTTGTACTGTCTGGTGAAGCCATTTGGCAACAAAATGAGCAAATAAATGCAGTTGGCTACACTACTCCGATAATGACAACAAGTGCTCATTGCAATAACGCTGGCACTTCACAATGCTCCTGTCCTTCAAATGTTTCTTCCAAGGTACAACAAGAGCTTGGGAGCCGAGACACTGCCTTTTCGCTACCTGATCTGAACCTTCCATTTGGAGAGGACTCTAGCTCTGAGGTTTTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

407

Amino Acids

45.3

Weight (kDa)

9.76

Isoelectric Point (pI)

55.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15800 AT1G80610
fragaria_vesca	FvH4_6g29000
malus_domestica	MD09G1223300.v1.1 MD17G1219700.v1.1
prunus_persica	Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1
pyrus_communis	pycom12419g00130 pycom17g22450
rosa_chinensis	RchiOBHm_Chr2g0133521
rosa_laevigata	RLG00000019351
rosa_multiflora	Rmu_co8487101.1_g000001 Rmu_sc0000924.1_g000058
rosa_roxburghii	Rroxscaffold_2G00111000
rosa_rugosa	Rorug02G0312600
rosa_samantha	Rh2AG365500 Rh2BG371100 Rh2CG348700 Rh2DG387900
rosa_wichuraiana	Rw0G005120 Rw2G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	407
AatII	GACGTC	1 cut(s)	585
Acc16I	TGCGCA	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	626
AccBSI	CCGCTC	2 cut(s)	624, 663
AccI	GTMKAC	2 cut(s)	64, 699
AccII	CGCG	3 cut(s)	61, 473, 746
AcoI	YGGCCR	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	859
AcyI	GRCGYC	2 cut(s)	582, 627
AfaI	GTAC	3 cut(s)	502, 987, 1128
AfiI	CCNNNNNNNGG	1 cut(s)	663
AflII	CTTAAG	1 cut(s)	728
AgsI	TTSAA	6 cut(s)	266, 787, 847, 865, 928, 1110
AjnI	CCWGG	3 cut(s)	548, 629, 656
AjuI	GAANNNNNNNTTGG	2 cut(s)	857, 889
AluBI	AGCT	7 cut(s)	415, 815, 924, 940, 974, 1138, 1203
AluI	AGCT	7 cut(s)	415, 815, 924, 940, 974, 1138, 1203
Alw21I	GWGCWC	1 cut(s)	1069
Alw26I	GTCTC	1 cut(s)	1143
AoxI	GGCC	5 cut(s)	50, 633, 666, 791, 909
ApeKI	GCWGC	3 cut(s)	538, 587, 693
ApoI	RAATTY	1 cut(s)	859
AspLEI	GCGC	6 cut(s)	61, 240, 475, 495, 543, 629
AspS9I	GGNCC	3 cut(s)	633, 666, 909
AsuHPI	GGTGA	3 cut(s)	35, 626, 1007
BanI	GGYRCC	1 cut(s)	626
BbsI	GAAGAC	1 cut(s)	812
Bbv12I	GWGCWC	1 cut(s)	1069
BbvCI	CCTCAGC	1 cut(s)	591
BbvI	GCAGC	3 cut(s)	550, 574, 680
BccI	CCATC	2 cut(s)	576, 788
BceAI	ACGGC	4 cut(s)	418, 469, 523, 528
BcgI	CGANNNNNNTGC	2 cut(s)	569, 603
BciT130I	CCWGG	3 cut(s)	550, 631, 658
BcoDI	GTCTC	1 cut(s)	1143
BfaI	CTAG	2 cut(s)	56, 1200
BfoI	RGCGCY	2 cut(s)	544, 630
BfrI	CTTAAG	1 cut(s)	728
BglII	AGATCT	1 cut(s)	749
BmcAI	AGTACT	1 cut(s)	502
Bme1390I	CCNGG	3 cut(s)	550, 631, 658
BmgT120I	GGNCC	3 cut(s)	633, 666, 909
BmiI	GGNNCC	3 cut(s)	628, 667, 1145
BmrFI	CCNGG	3 cut(s)	550, 631, 658
BoxI	GACNNNNGTC	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	812
BpmI	CTGGAG	1 cut(s)	679
Bpu10I	CCTNAGC	1 cut(s)	591
BpuEI	CTTGAG	2 cut(s)	446, 962
BsaAI	YACGTR	1 cut(s)	563
BsaHI	GRCGYC	2 cut(s)	582, 627
BsaJI	CCNNGG	2 cut(s)	630, 1122
Bsc4I	CCNNNNNNNGG	1 cut(s)	663
Bse3DI	GCAATG	1 cut(s)	1069
BseBI	CCWGG	3 cut(s)	550, 631, 658
BseDI	CCNNGG	2 cut(s)	630, 1122
BseLI	CCNNNNNNNGG	1 cut(s)	663
BseMI	GCAATG	1 cut(s)	1069
BseMII	CTCAG	2 cut(s)	582, 1197
BseRI	GAGGAG	2 cut(s)	842, 845
BseXI	GCAGC	3 cut(s)	550, 574, 680
BseYI	CCCAGC	1 cut(s)	405
Bsh1236I	CGCG	3 cut(s)	61, 473, 746
Bsh1285I	CGRYCG	2 cut(s)	441, 738
BshFI	GGCC	5 cut(s)	52, 635, 668, 793, 911
BshNI	GGYRCC	1 cut(s)	626
BsiEI	CGRYCG	2 cut(s)	441, 738
BsiHKAI	GWGCWC	1 cut(s)	1069
BsiSI	CCGG	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	663
BsmAI	GTCTC	1 cut(s)	1143
BsnI	GGCC	5 cut(s)	52, 635, 668, 793, 911
Bsp1286I	GDGCHC	1 cut(s)	1069
Bsp143I	GATC	3 cut(s)	445, 749, 1171
BspANI	GGCC	5 cut(s)	52, 635, 668, 793, 911
BspCNI	CTCAG	2 cut(s)	583, 1198
BspFNI	CGCG	3 cut(s)	61, 473, 746
BspLI	GGNNCC	3 cut(s)	628, 667, 1145
BspT107I	GGYRCC	1 cut(s)	626
BspTI	CTTAAG	1 cut(s)	728
BsrBI	CCGCTC	2 cut(s)	624, 663
BsrDI	GCAATG	1 cut(s)	1069
BssECI	CCNNGG	2 cut(s)	630, 1122
BssMI	GATC	3 cut(s)	445, 749, 1171
BssNI	GRCGYC	2 cut(s)	582, 627
BssT1I	CCWWGG	1 cut(s)	1122
Bst2UI	CCWGG	3 cut(s)	550, 631, 658
Bst4CI	ACNGT	5 cut(s)	362, 395, 704, 895, 990
Bst6I	CTCTTC	1 cut(s)	312
BstACI	GRCGYC	2 cut(s)	582, 627
BstAFI	CTTAAG	1 cut(s)	728
BstBAI	YACGTR	1 cut(s)	563
BstC8I	GCNNGC	5 cut(s)	417, 468, 637, 722, 1084
BstDEI	CTNAG	4 cut(s)	31, 591, 753, 1206
BstFNI	CGCG	3 cut(s)	61, 473, 746
BstH2I	RGCGCY	2 cut(s)	544, 630
BstHHI	GCGC	6 cut(s)	61, 240, 475, 495, 543, 629
BstKTI	GATC	3 cut(s)	448, 752, 1174
BstMAI	GTCTC	1 cut(s)	1143
BstMBI	GATC	3 cut(s)	445, 749, 1171
BstMCI	CGRYCG	2 cut(s)	441, 738
BstMWI	GCNNNNNNNGC	9 cut(s)	58, 472, 481, 490, 690, 693, 730, 946, 955
BstNI	CCWGG	3 cut(s)	550, 631, 658
BstPAI	GACNNNNGTC	1 cut(s)	393
BstSCI	CCNGG	3 cut(s)	548, 629, 656
BstUI	CGCG	3 cut(s)	61, 473, 746
BstV1I	GCAGC	3 cut(s)	550, 574, 680
BstV2I	GAAGAC	1 cut(s)	812
BstX2I	RGATCY	1 cut(s)	749
BstYI	RGATCY	1 cut(s)	749
BsuRI	GGCC	5 cut(s)	52, 635, 668, 793, 911
BtsI	GCAGTG	2 cut(s)	885, 1152
BtsIMutI	CAGTG	4 cut(s)	367, 885, 891, 1152
Cac8I	GCNNGC	5 cut(s)	417, 468, 637, 722, 1084
CfoI	GCGC	6 cut(s)	61, 240, 475, 495, 543, 629
Cfr13I	GGNCC	3 cut(s)	633, 666, 909
CseI	GACGC	2 cut(s)	50, 685
Csp6I	GTAC	3 cut(s)	501, 986, 1127
CviAII	CATG	2 cut(s)	421, 572
CviQI	GTAC	3 cut(s)	501, 986, 1127
DdeI	CTNAG	4 cut(s)	31, 591, 753, 1206
DinI	GGCGCC	1 cut(s)	628
DpnI	GATC	3 cut(s)	447, 751, 1173
DpnII	GATC	3 cut(s)	445, 749, 1171
DrdI	GACNNNNNNGTC	1 cut(s)	407
DseDI	GACNNNNNNGTC	1 cut(s)	407
EaeI	YGGCCR	1 cut(s)	50
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
EciI	GGCGGA	2 cut(s)	446, 471
Eco130I	CCWWGG	1 cut(s)	1122
EcoRII	CCWGG	3 cut(s)	548, 629, 656
EcoT14I	CCWWGG	1 cut(s)	1122
EgeI	GGCGCC	1 cut(s)	628
EheI	GGCGCC	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	1122
FaeI	CATG	2 cut(s)	424, 575
FalI	AAGNNNNNCTT	4 cut(s)	261, 293, 924, 956
FatI	CATG	2 cut(s)	420, 571
FauI	CCCGC	2 cut(s)	261, 656
FblI	GTMKAC	2 cut(s)	64, 699
FspBI	CTAG	2 cut(s)	56, 1200
FspI	TGCGCA	1 cut(s)	239
GlaI	GCGC	6 cut(s)	60, 239, 474, 494, 542, 628
GsaI	CCCAGC	1 cut(s)	409
GsuI	CTGGAG	1 cut(s)	679
HaeII	RGCGCY	2 cut(s)	544, 630
HaeIII	GGCC	5 cut(s)	52, 635, 668, 793, 911
HapII	CCGG	1 cut(s)	49
HgaI	GACGC	2 cut(s)	50, 685
HhaI	GCGC	6 cut(s)	61, 240, 475, 495, 543, 629
Hin1I	GRCGYC	2 cut(s)	582, 627
Hin1II	CATG	2 cut(s)	424, 575
Hin6I	GCGC	6 cut(s)	59, 238, 473, 493, 541, 627
HinP1I	GCGC	6 cut(s)	59, 238, 473, 493, 541, 627
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HindIII	AAGCTT	2 cut(s)	922, 938
HinfI	GANTC	4 cut(s)	617, 713, 835, 1196
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	3 cut(s)	35, 626, 1007
Hpy166II	GTNNAC	2 cut(s)	65, 700
Hpy188I	TCNGA	5 cut(s)	516, 709, 1050, 1176, 1207
Hpy188III	TCNNGA	3 cut(s)	189, 398, 787
Hpy8I	GTNNAC	2 cut(s)	65, 700
Hpy99I	CGWCG	9 cut(s)	395, 431, 446, 490, 581, 584, 587, 701, 704
HpyAV	CCTTC	4 cut(s)	297, 841, 1116, 1190
HpyCH4III	ACNGT	5 cut(s)	362, 395, 704, 895, 990
HpyCH4IV	ACGT	4 cut(s)	555, 562, 582, 809
HpyCH4V	TGCA	4 cut(s)	333, 949, 1031, 1074
HpyF10VI	GCNNNNNNNGC	9 cut(s)	58, 472, 481, 490, 690, 693, 730, 946, 955
HpyF3I	CTNAG	4 cut(s)	31, 591, 753, 1206
HpySE526I	ACGT	4 cut(s)	555, 562, 582, 809
Hsp92I	GRCGYC	2 cut(s)	582, 627
Hsp92II	CATG	2 cut(s)	424, 575
HspAI	GCGC	6 cut(s)	59, 238, 473, 493, 541, 627
KasI	GGCGCC	1 cut(s)	626
Kzo9I	GATC	3 cut(s)	445, 749, 1171
LmnI	GCTCC	4 cut(s)	528, 660, 1103, 1143
Lsp1109I	GCAGC	3 cut(s)	550, 574, 680
MaeI	CTAG	2 cut(s)	56, 1200
MaeII	ACGT	4 cut(s)	555, 562, 582, 809
MaeIII	GTNAC	2 cut(s)	362, 563
MalI	GATC	3 cut(s)	447, 751, 1173
MbiI	CCGCTC	2 cut(s)	624, 663
MboI	GATC	3 cut(s)	445, 749, 1171
MfeI	CAATTG	1 cut(s)	950
MflI	RGATCY	1 cut(s)	749
MhlI	GDGCHC	1 cut(s)	1069
MluCI	AATT	8 cut(s)	26, 113, 261, 773, 818, 859, 872, 950
Mly113I	GGCGCC	1 cut(s)	627
MlyI	GAGTC	3 cut(s)	626, 844, 1190
MmeI	TCCRAC	1 cut(s)	539
MseI	TTAA	4 cut(s)	138, 729, 776, 821
MspCI	CTTAAG	1 cut(s)	728
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	3 cut(s)	550, 631, 658
MunI	CAATTG	1 cut(s)	950
MvaI	CCWGG	3 cut(s)	550, 631, 658
MvnI	CGCG	3 cut(s)	61, 473, 746
MwoI	GCNNNNNNNGC	9 cut(s)	58, 472, 481, 490, 690, 693, 730, 946, 955
NarI	GGCGCC	1 cut(s)	627
NdeII	GATC	3 cut(s)	445, 749, 1171
NlaIII	CATG	2 cut(s)	424, 575
NlaIV	GGNNCC	3 cut(s)	628, 667, 1145
NmeAIII	GCCGAG	1 cut(s)	1172
NmuCI	GTSAC	1 cut(s)	362
NsbI	TGCGCA	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	713
PflFI	GACNNNGTC	1 cut(s)	581
PfoI	TCCNGGA	2 cut(s)	548, 656
PleI	GAGTC	3 cut(s)	625, 843, 1190
PluTI	GGCGCC	1 cut(s)	630
PpsI	GAGTC	3 cut(s)	625, 843, 1190
Ppu21I	YACGTR	1 cut(s)	563
PshAI	GACNNNNGTC	1 cut(s)	393
Psp6I	CCWGG	3 cut(s)	548, 629, 656
PspFI	CCCAGC	1 cut(s)	405
PspGI	CCWGG	3 cut(s)	548, 629, 656
PspN4I	GGNNCC	3 cut(s)	628, 667, 1145
PspPI	GGNCC	3 cut(s)	633, 666, 909
PsuI	RGATCY	1 cut(s)	749
PsyI	GACNNNGTC	1 cut(s)	581
RsaI	GTAC	3 cut(s)	502, 987, 1128
RsaNI	GTAC	3 cut(s)	501, 986, 1127
SalI	GTCGAC	1 cut(s)	698
SaqAI	TTAA	4 cut(s)	138, 729, 776, 821
Sau3AI	GATC	3 cut(s)	445, 749, 1171
Sau96I	GGNCC	3 cut(s)	633, 666, 909
ScaI	AGTACT	1 cut(s)	502
SchI	GAGTC	3 cut(s)	626, 844, 1190
ScrFI	CCNGG	3 cut(s)	550, 631, 658
SduI	GDGCHC	1 cut(s)	1069
SfoI	GGCGCC	1 cut(s)	628
SgrDI	CGTCGACG	1 cut(s)	698
SmlI	CTYRAG	3 cut(s)	461, 728, 941
SmoI	CTYRAG	3 cut(s)	461, 728, 941
Sse9I	AATT	8 cut(s)	26, 113, 261, 773, 818, 859, 872, 950
SspDI	GGCGCC	1 cut(s)	626
SspMI	CTAG	2 cut(s)	56, 1200
StyD4I	CCNGG	3 cut(s)	548, 629, 656
StyI	CCWWGG	1 cut(s)	1122
TaaI	ACNGT	5 cut(s)	362, 395, 704, 895, 990
TaiI	ACGT	4 cut(s)	558, 565, 585, 812
TaqI	TCGA	4 cut(s)	444, 488, 620, 699
TaqII	GACCGA	1 cut(s)	752
TasI	AATT	8 cut(s)	26, 113, 261, 773, 818, 859, 872, 950
TatI	WGTACW	2 cut(s)	500, 985
TauI	GCSGC	7 cut(s)	473, 478, 627, 684, 687, 727, 958
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	4 cut(s)	138, 729, 776, 821
Tru9I	TTAA	4 cut(s)	138, 729, 776, 821
TscAI	CASTG	4 cut(s)	367, 885, 898, 1159
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	3 cut(s)	538, 587, 693
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	5 cut(s)	217, 437, 885, 933, 983
TspRI	CASTG	4 cut(s)	367, 885, 898, 1159
Tth111I	GACNNNGTC	1 cut(s)	581
Vha464I	CTTAAG	1 cut(s)	728
XapI	RAATTY	1 cut(s)	859
XmiI	GTMKAC	2 cut(s)	64, 699
XspI	CTAG	2 cut(s)	56, 1200
ZraI	GACGTC	1 cut(s)	583
ZrmI	AGTACT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.